Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006397

Physical Location & Seq

Genomic Coordinates Reverse (-)

47902041 .. 47903710

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0362000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTTCTTCATGAAAGTTGTAGGGGACGTTAAACCGAGCGCGTACATATGTGGTACTTTTCATTTTCTTCTTCTCTCTCTCCTTTCTCCCGCATTTTTTCTCTCTCCTCGGCACTCTCTGCAACTCCGGCCACCTCACGATTCCGGCCACCTGGGGACGAACGAGTGGCACCGTTGGACTCCTCTATTCCTACCCAACCTCCCCACGGCGGTAACTCACGGCGGCTTGGCCGGAAAACGAAGCATCGGGTCCTTGAAGTTTCACTGTAGCAAATTGGTCAACGCCGGTTTCTCCCGATTCCGGCCACCTCCGGCGACGAACCATAATCATTTGGAAGCGCCTTGCGATGTAGATGATGCTCCCCAAATATTTTGCAGCGATTTGAAGCGTGGAGGAAGAATTGAAGGGCAATGTTGCGAGCTACGGCTAGATGAAGGGACTCGTTTGCGTGGTCGCCAACTAGTACTTTTCGGATATGATTTCGGTTTTGGAATATTGCTTGGATTTTCCATCATGATTTTTGGAACCGTGTGGGACACGCTGTCGATTTATACGACGTTTTACGAGAATTTCCGGGTACGGTTGGGAATCGTACCCGCGTTTTTCTTTATTCGTGGGACATGGGGAAGCCTTAAGGATTTATTGGATTTTATTGGTTTTTACCCGCCATACCTGGGTCGTCATATTTATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006497 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0012505 GO:0016409 GO:0016740 GO:0016746 GO:0016747 GO:0018345 GO:0019538 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

231

Amino Acids

26.15

Weight (kDa)

9.03

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35813 FvH4_3g35813 FvH4_3g35813
malus_domestica	MD03G1096200.v1.1
prunus_persica	Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1
pyrus_communis	pycom03g07870
rosa_chinensis	RchiOBHm_Chr5g0064071
rosa_laevigata	RLG00000035699 RLG00000035701
rosa_multiflora	Rmu_sc0003547.1_g000007 Rmu_sc0005006.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016800
rosa_rugosa	Rorug05G0362000 Rorug05G0362100
rosa_samantha	Rh5AG420600 Rh5BG436200 Rh5CG459000 Rh5DG449400 Rh5DG449600
rosa_wichuraiana	Rw5G039510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AccII	CGCG	2 cut(s)	41, 599
AciI	CCGC	5 cut(s)	90, 209, 222, 597, 665
AcoI	YGGCCR	4 cut(s)	128, 145, 228, 302
AcsI	RAATTY	1 cut(s)	568
AfaI	GTAC	5 cut(s)	44, 55, 465, 579, 594
AfiI	CCNNNNNNNGG	4 cut(s)	205, 208, 300, 674
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	3 cut(s)	256, 385, 404
AhdI	GACNNNNNGTC	1 cut(s)	541
AhlI	ACTAGT	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	150, 672
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
AoxI	GGCC	4 cut(s)	128, 145, 228, 302
ApeKI	GCWGC	1 cut(s)	375
ApoI	RAATTY	1 cut(s)	568
AspLEI	GCGC	2 cut(s)	41, 340
AspS9I	GGNCC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	387
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	3 cut(s)	222, 235, 440
BciT130I	CCWGG	2 cut(s)	152, 674
BcnI	CCSGG	1 cut(s)	575
BcuI	ACTAGT	1 cut(s)	460
BfaI	CTAG	3 cut(s)	428, 461, 694
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	1 cut(s)	341
BfrI	CTTAAG	1 cut(s)	632
BisI	GCNGC	2 cut(s)	223, 376
BlsI	GCNGC	2 cut(s)	224, 377
BmcAI	AGTACT	1 cut(s)	465
Bme1390I	CCNGG	3 cut(s)	152, 575, 674
Bme18I	GGWCC	1 cut(s)	249
BmeRI	GACNNNNNGTC	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	3 cut(s)	170, 250, 526
BmrFI	CCNGG	3 cut(s)	152, 575, 674
BmsI	GCATC	2 cut(s)	252, 346
BpuMI	CCSGG	1 cut(s)	575
BsaJI	CCNNGG	4 cut(s)	107, 151, 204, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 208, 300, 674
Bse118I	RCCGGY	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	416
BseBI	CCWGG	2 cut(s)	152, 674
BseDI	CCNNGG	4 cut(s)	107, 151, 204, 673
BseLI	CCNNNNNNNGG	4 cut(s)	205, 208, 300, 674
BseMI	GCAATG	1 cut(s)	416
BseRI	GAGGAG	2 cut(s)	96, 171
BseXI	GCAGC	1 cut(s)	387
Bsh1236I	CGCG	2 cut(s)	41, 599
BshFI	GGCC	4 cut(s)	130, 147, 230, 304
BshNI	GGYRCC	1 cut(s)	168
BsiSI	CCGG	7 cut(s)	127, 144, 231, 285, 301, 311, 574
BslFI	GGGAC	5 cut(s)	38, 169, 451, 548, 631
BslI	CCNNNNNNNGG	4 cut(s)	205, 208, 300, 674
BsmFI	GGGAC	5 cut(s)	38, 169, 451, 548, 631
BsnI	GGCC	4 cut(s)	130, 147, 230, 304
BspACI	CCGC	5 cut(s)	90, 209, 222, 597, 665
BspANI	GGCC	4 cut(s)	130, 147, 230, 304
BspFNI	CGCG	2 cut(s)	41, 599
BspHI	TCATGA	2 cut(s)	9, 513
BspLI	GGNNCC	3 cut(s)	170, 250, 526
BspT107I	GGYRCC	1 cut(s)	168
BspTI	CTTAAG	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	4 cut(s)	107, 151, 204, 673
Bst2UI	CCWGG	2 cut(s)	152, 674
Bst4CI	ACNGT	4 cut(s)	173, 266, 529, 582
BstAFI	CTTAAG	1 cut(s)	632
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	419
BstDSI	CCRYGG	1 cut(s)	204
BstFNI	CGCG	2 cut(s)	41, 599
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	2 cut(s)	41, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 127
BstNI	CCWGG	2 cut(s)	152, 674
BstSCI	CCNGG	3 cut(s)	150, 573, 672
BstSFI	CTRYAG	1 cut(s)	265
BstUI	CGCG	2 cut(s)	41, 599
BstV1I	GCAGC	1 cut(s)	387
BsuRI	GGCC	4 cut(s)	130, 147, 230, 304
BtgI	CCRYGG	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	419
CciI	TCATGA	2 cut(s)	9, 513
CfoI	GCGC	2 cut(s)	41, 340
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	5 cut(s)	43, 54, 464, 578, 593
CviAII	CATG	3 cut(s)	10, 514, 621
CviJI	RGCY	8 cut(s)	130, 147, 225, 230, 304, 421, 427, 630
CviKI_1	RGCY	8 cut(s)	130, 147, 225, 230, 304, 421, 427, 630
CviQI	GTAC	5 cut(s)	43, 54, 464, 578, 593
DriI	GACNNNNNGTC	1 cut(s)	541
EaeI	YGGCCR	4 cut(s)	128, 145, 228, 302
Eam1105I	GACNNNNNGTC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	150, 672
FaeI	CATG	3 cut(s)	13, 517, 624
FaqI	GGGAC	5 cut(s)	38, 169, 451, 548, 631
FatI	CATG	3 cut(s)	9, 513, 620
FauI	CCCGC	3 cut(s)	97, 604, 672
FauNDI	CATATG	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	223, 376
Fsp4HI	GCNGC	2 cut(s)	223, 376
FspBI	CTAG	3 cut(s)	428, 461, 694
GlaI	GCGC	2 cut(s)	40, 339
GluI	GCNGC	2 cut(s)	223, 376
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	4 cut(s)	130, 147, 230, 304
HapII	CCGG	7 cut(s)	127, 144, 231, 285, 301, 311, 574
HhaI	GCGC	2 cut(s)	41, 340
Hin1II	CATG	3 cut(s)	13, 517, 624
Hin6I	GCGC	2 cut(s)	39, 338
HinP1I	GCGC	2 cut(s)	39, 338
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	5 cut(s)	140, 178, 297, 439, 588
HpaII	CCGG	7 cut(s)	127, 144, 231, 285, 301, 311, 574
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	473
Hpy188III	TCNNGA	4 cut(s)	10, 137, 294, 514
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	2 cut(s)	319, 559
HpyAV	CCTTC	2 cut(s)	398, 428
HpyCH4III	ACNGT	4 cut(s)	173, 266, 529, 582
HpyCH4IV	ACGT	2 cut(s)	27, 557
HpyCH4V	TGCA	2 cut(s)	121, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 127
HpySE526I	ACGT	2 cut(s)	27, 557
Hsp92II	CATG	3 cut(s)	13, 517, 624
HspAI	GCGC	2 cut(s)	39, 338
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	1 cut(s)	387
LweI	GCATC	2 cut(s)	252, 346
MaeI	CTAG	3 cut(s)	428, 461, 694
MaeII	ACGT	2 cut(s)	27, 557
MaeIII	GTNAC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	59, 62, 408
MluCI	AATT	3 cut(s)	272, 399, 568
MlyI	GAGTC	2 cut(s)	172, 433
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	6 cut(s)	117, 144, 192, 209, 318, 386
MseI	TTAA	2 cut(s)	30, 633
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	7 cut(s)	127, 144, 231, 285, 301, 311, 574
MspR9I	CCNGG	3 cut(s)	152, 575, 674
MvaI	CCWGG	2 cut(s)	152, 674
MvnI	CGCG	2 cut(s)	41, 599
MwoI	GCNNNNNNNGC	2 cut(s)	118, 127
NciI	CCSGG	1 cut(s)	575
NdeI	CATATG	1 cut(s)	47
NlaIII	CATG	3 cut(s)	13, 517, 624
NlaIV	GGNNCC	3 cut(s)	170, 250, 526
NmeAIII	GCCGAG	1 cut(s)	88
PagI	TCATGA	2 cut(s)	9, 513
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PfeI	GAWTC	3 cut(s)	140, 297, 588
PkrI	GCNGC	2 cut(s)	224, 377
PleI	GAGTC	2 cut(s)	172, 433
PpsI	GAGTC	2 cut(s)	172, 433
PpuMI	RGGWCCY	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	150, 672
PspGI	CCWGG	2 cut(s)	150, 672
PspN4I	GGNNCC	3 cut(s)	170, 250, 526
PspPI	GGNCC	1 cut(s)	249
PspPPI	RGGWCCY	1 cut(s)	249
RsaI	GTAC	5 cut(s)	44, 55, 465, 579, 594
RsaNI	GTAC	5 cut(s)	43, 54, 464, 578, 593
SaqAI	TTAA	2 cut(s)	30, 633
SatI	GCNGC	2 cut(s)	223, 376
Sau96I	GGNCC	1 cut(s)	249
ScaI	AGTACT	1 cut(s)	465
SchI	GAGTC	2 cut(s)	172, 433
ScrFI	CCNGG	3 cut(s)	152, 575, 674
SetI	ASST	8 cut(s)	30, 136, 153, 201, 310, 423, 560, 675
SfaNI	GCATC	2 cut(s)	252, 346
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
SpeI	ACTAGT	1 cut(s)	460
Sse9I	AATT	3 cut(s)	272, 399, 568
SsiI	CCGC	5 cut(s)	90, 209, 222, 597, 665
SspI	AATATT	2 cut(s)	369, 495
SspMI	CTAG	3 cut(s)	428, 461, 694
StyD4I	CCNGG	3 cut(s)	150, 573, 672
TaaI	ACNGT	4 cut(s)	173, 266, 529, 582
TaiI	ACGT	2 cut(s)	30, 560
TaqI	TCGA	1 cut(s)	545
TasI	AATT	3 cut(s)	272, 399, 568
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	140, 297, 588
Tru1I	TTAA	2 cut(s)	30, 633
Tru9I	TTAA	2 cut(s)	30, 633
TscAI	CASTG	1 cut(s)	269
TseI	GCWGC	1 cut(s)	375
TspDTI	ATGAA	3 cut(s)	26, 50, 447
TspRI	CASTG	1 cut(s)	269
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	568
XspI	CTAG	3 cut(s)	428, 461, 694
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.