Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003547.1

Orthogroup ID

OG0006397

Physical Location & Seq

Genomic Coordinates Forward (+)

33143 .. 35544

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003547.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgcttgaaacacagaaccggagcaatcccctaagtcggtccaagctaattggccgttgcatagtctcctgtatcttcgtctttctcactcacttggctctctctgtgatccctcgcttcttctccgctttctcctttgtaacccaactcgctctctcggctctgctgcttctgctgctcgtgggttttggcggatggtgcagaagaacgcttcttagagcaaaagcttcggctccggctttggtcttcttcaatattctcttcatttgggggttttacttctctgttatccgaccagctgtgccgcaactaaacgatgccgttttcaactgtggagtcgtgttcctcgttattgatactgatagtaataatggtgttgtcaatggcagtatcataacaagtgaccctggcattgttacaaatgggtctgcctctccagaacagcctatggagagctcactttctcaagttgataaggagttggagcccttagcaagtggtttaggccatgagttgactcatgattccgggttgttaatgagggtaagatactgcaaaacctgcaaggcatacataaagggtcttgaccatcattgtcctgcttttgggaattgtataggccaaaataatcatcgccttttcttaattcttctgtttggatttatcggtactgaagcttcttatctagtgtgctcatctctctttgcggccaaatccaggatcttggatagaccctcggagcttactctttctgaaagtttagctgttagcacaattctgttcaccattctccaactgctatggcaggtggtctttttgatatggcacatatattgtttatgcgtgaacatcagaactgatgagtggataaaatggaagaagtatccagagttccaacttgttattccacctgaaccaggacaaagcttcagaaatattaggttctggaatccatatgacaaaggcattgtacagaatgtgaaggagtttctagccatccagcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006497 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0012505 GO:0016409 GO:0016740 GO:0016746 GO:0016747 GO:0018345 GO:0019538 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

335

Amino Acids

37.61

Weight (kDa)

8.63

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35813 FvH4_3g35813 FvH4_3g35813
malus_domestica	MD03G1096200.v1.1
prunus_persica	Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1
pyrus_communis	pycom03g07870
rosa_chinensis	RchiOBHm_Chr5g0064071
rosa_laevigata	RLG00000035699 RLG00000035701
rosa_multiflora	Rmu_sc0003547.1_g000007 Rmu_sc0005006.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016800
rosa_rugosa	Rorug05G0362000 Rorug05G0362100
rosa_samantha	Rh5AG420600 Rh5BG436200 Rh5CG459000 Rh5DG449400 Rh5DG449600
rosa_wichuraiana	Rw5G039510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	796
Acc36I	ACCTGC	2 cut(s)	569, 796
AciI	CCGC	4 cut(s)	126, 192, 305, 707
AclWI	GGATC	2 cut(s)	103, 728
AcoI	YGGCCR	2 cut(s)	52, 708
AcuI	CTGAAG	2 cut(s)	693, 913
AfaI	GTAC	2 cut(s)	670, 972
AfiI	CCNNNNNNNGG	4 cut(s)	36, 605, 717, 917
AgsI	TTSAA	3 cut(s)	8, 253, 328
AjnI	CCWGG	3 cut(s)	406, 716, 916
AjuI	GAANNNNNNNTTGG	2 cut(s)	888, 920
AluBI	AGCT	8 cut(s)	46, 227, 299, 456, 677, 742, 764, 927
AluI	AGCT	8 cut(s)	46, 227, 299, 456, 677, 742, 764, 927
Alw21I	GWGCWC	2 cut(s)	458, 695
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	103, 728
AoxI	GGCC	4 cut(s)	52, 505, 619, 708
ApeKI	GCWGC	2 cut(s)	166, 175
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	1 cut(s)	775
AvaII	GGWCC	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	458, 489
BarI	GAAGNNNNNNTAC	2 cut(s)	661, 693
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	238
Bbv12I	GWGCWC	2 cut(s)	458, 695
BbvI	GCAGC	2 cut(s)	153, 162
BccI	CCATC	3 cut(s)	189, 597, 1004
BceAI	ACGGC	2 cut(s)	39, 305
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	3 cut(s)	408, 718, 918
BciVI	GTATCC	1 cut(s)	894
BcnI	CCSGG	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	686, 992
BfuAI	ACCTGC	2 cut(s)	569, 796
BfuI	GTATCC	1 cut(s)	894
BisI	GCNGC	4 cut(s)	167, 176, 305, 708
BlsI	GCNGC	4 cut(s)	168, 177, 306, 709
Bme1390I	CCNGG	4 cut(s)	408, 529, 718, 918
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	234, 486
BmrFI	CCNGG	4 cut(s)	408, 529, 718, 918
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	490
BpuEI	CTTGAG	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	529
BsaJI	CCNNGG	2 cut(s)	406, 735
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 605, 717, 917
BseBI	CCWGG	3 cut(s)	408, 718, 918
BseDI	CCNNGG	2 cut(s)	406, 735
BseGI	GGATG	2 cut(s)	200, 996
BseLI	CCNNNNNNNGG	4 cut(s)	36, 605, 717, 917
BseXI	GCAGC	2 cut(s)	153, 162
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	4 cut(s)	54, 507, 621, 710
BsiHKAI	GWGCWC	2 cut(s)	458, 695
BsiSI	CCGG	3 cut(s)	19, 236, 528
BslI	CCNNNNNNNGG	4 cut(s)	36, 605, 717, 917
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	4 cut(s)	54, 507, 621, 710
Bsp1286I	GDGCHC	3 cut(s)	458, 489, 695
Bsp1407I	TGTACA	1 cut(s)	970
Bsp143I	GATC	2 cut(s)	108, 720
BspACI	CCGC	4 cut(s)	126, 192, 305, 707
BspANI	GGCC	4 cut(s)	54, 507, 621, 710
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	234, 486
BspMI	ACCTGC	2 cut(s)	569, 796
BspPI	GGATC	2 cut(s)	103, 728
BsrGI	TGTACA	1 cut(s)	970
BssECI	CCNNGG	2 cut(s)	406, 735
BssMI	GATC	2 cut(s)	108, 720
BssSI	CACGAG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	3 cut(s)	408, 718, 918
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	561
BstAUI	TGTACA	1 cut(s)	970
BstDEI	CTNAG	3 cut(s)	32, 215, 490
BstENI	CCTNNNNNAGG	1 cut(s)	915
BstF5I	GGATG	2 cut(s)	200, 996
BstKTI	GATC	2 cut(s)	111, 723
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	108, 720
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 172, 175, 198, 561
BstNI	CCWGG	3 cut(s)	408, 718, 918
BstSCI	CCNGG	4 cut(s)	406, 527, 716, 916
BstV1I	GCAGC	2 cut(s)	153, 162
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	720
BstXI	CCANNNNNNTGG	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	720
BsuI	GTATCC	1 cut(s)	894
BsuRI	GGCC	4 cut(s)	54, 507, 621, 710
BtgZI	GCGATG	1 cut(s)	617
BtsCI	GGATG	2 cut(s)	200, 996
BveI	ACCTGC	2 cut(s)	569, 796
CciI	TCATGA	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	669, 971
CviAII	CATG	2 cut(s)	509, 521
CviQI	GTAC	2 cut(s)	669, 971
DdeI	CTNAG	3 cut(s)	32, 215, 490
DpnI	GATC	2 cut(s)	110, 722
DpnII	GATC	2 cut(s)	108, 720
EaeI	YGGCCR	2 cut(s)	52, 708
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	456
Eco24I	GRGCYC	2 cut(s)	458, 489
Eco47I	GGWCC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	693, 913
EcoICRI	GAGCTC	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	915
EcoRII	CCWGG	3 cut(s)	406, 716, 916
EcoT38I	GRGCYC	2 cut(s)	458, 489
FaeI	CATG	2 cut(s)	512, 524
FatI	CATG	2 cut(s)	508, 520
FauNDI	CATATG	1 cut(s)	955
Fnu4HI	GCNGC	4 cut(s)	167, 176, 305, 708
FokI	GGATG	2 cut(s)	207, 983
FriOI	GRGCYC	2 cut(s)	458, 489
Fsp4HI	GCNGC	4 cut(s)	167, 176, 305, 708
FspBI	CTAG	2 cut(s)	686, 992
GluI	GCNGC	4 cut(s)	167, 176, 305, 708
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	4 cut(s)	54, 507, 621, 710
HapII	CCGG	3 cut(s)	19, 236, 528
Hin1II	CATG	2 cut(s)	512, 524
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HindIII	AAGCTT	3 cut(s)	225, 675, 925
HinfI	GANTC	4 cut(s)	336, 517, 524, 949
HpaII	CCGG	3 cut(s)	19, 236, 528
HphI	GGTGA	1 cut(s)	775
Hpy166II	GTNNAC	3 cut(s)	516, 783, 847
Hpy188I	TCNGA	5 cut(s)	293, 739, 754, 854, 932
Hpy188III	TCNNGA	5 cut(s)	437, 521, 584, 887, 946
Hpy8I	GTNNAC	3 cut(s)	516, 783, 847
HpyAV	CCTTC	1 cut(s)	976
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	4 cut(s)	60, 201, 555, 564
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 172, 175, 198, 561
HpyF3I	CTNAG	3 cut(s)	32, 215, 490
Hsp92II	CATG	2 cut(s)	512, 524
Kzo9I	GATC	2 cut(s)	108, 720
LmnI	GCTCC	4 cut(s)	21, 238, 484, 739
Lsp1109I	GCAGC	2 cut(s)	153, 162
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	686, 992
MaeIII	GTNAC	3 cut(s)	139, 401, 415
MalI	GATC	2 cut(s)	110, 722
MboI	GATC	2 cut(s)	108, 720
MboII	GAAGA	8 cut(s)	67, 112, 216, 238, 241, 253, 641, 889
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	3 cut(s)	458, 489, 695
MluCI	AATT	4 cut(s)	48, 610, 645, 774
MlyI	GAGTC	2 cut(s)	345, 511
MmeI	TCCRAC	4 cut(s)	316, 462, 817, 919
MnlI	CCTC	5 cut(s)	123, 356, 442, 534, 745
MseI	TTAA	3 cut(s)	536, 644, 1006
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	3 cut(s)	19, 236, 528
MspR9I	CCNGG	4 cut(s)	408, 529, 718, 918
MvaI	CCWGG	3 cut(s)	408, 718, 918
MwoI	GCNNNNNNNGC	5 cut(s)	158, 172, 175, 198, 561
NciI	CCSGG	1 cut(s)	529
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	2 cut(s)	108, 720
NlaIII	CATG	2 cut(s)	512, 524
NlaIV	GGNNCC	2 cut(s)	234, 486
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	401
PagI	TCATGA	1 cut(s)	520
PaqCI	CACCTGC	1 cut(s)	796
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	524, 949
PfoI	TCCNGGA	1 cut(s)	716
PkrI	GCNGC	4 cut(s)	168, 177, 306, 709
PleI	GAGTC	2 cut(s)	344, 511
PpsI	GAGTC	2 cut(s)	344, 511
Psp124BI	GAGCTC	1 cut(s)	458
Psp6I	CCWGG	3 cut(s)	406, 716, 916
PspGI	CCWGG	3 cut(s)	406, 716, 916
PspN4I	GGNNCC	2 cut(s)	234, 486
PspPI	GGNCC	1 cut(s)	39
PsrI	GAACNNNNNNTAC	2 cut(s)	875, 907
PsuI	RGATCY	1 cut(s)	720
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	2 cut(s)	670, 972
RsaNI	GTAC	2 cut(s)	669, 971
SacI	GAGCTC	1 cut(s)	458
SaqAI	TTAA	3 cut(s)	536, 644, 1006
SatI	GCNGC	4 cut(s)	167, 176, 305, 708
Sau3AI	GATC	2 cut(s)	108, 720
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	345, 511
ScrFI	CCNGG	4 cut(s)	408, 529, 718, 918
SduI	GDGCHC	3 cut(s)	458, 489, 695
SfaNI	GCATC	1 cut(s)	307
SinI	GGWCC	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
Sse9I	AATT	4 cut(s)	48, 610, 645, 774
SsiI	CCGC	4 cut(s)	126, 192, 305, 707
SspI	AATATT	2 cut(s)	256, 937
SspMI	CTAG	2 cut(s)	686, 992
SstI	GAGCTC	1 cut(s)	458
StyD4I	CCNGG	4 cut(s)	406, 527, 716, 916
TaaI	ACNGT	1 cut(s)	332
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	4 cut(s)	48, 610, 645, 774
TatI	WGTACW	1 cut(s)	970
TauI	GCSGC	2 cut(s)	307, 710
TfiI	GAWTC	2 cut(s)	524, 949
Tru1I	TTAA	3 cut(s)	536, 644, 1006
Tru9I	TTAA	3 cut(s)	536, 644, 1006
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	166, 175
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	39
XagI	CCTNNNNNAGG	1 cut(s)	915
XspI	CTAG	2 cut(s)	686, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.