Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006397

Physical Location & Seq

Genomic Coordinates Forward (+)

71720991 .. 71723208

Gene Structure 2218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG449600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTGCAGAAGAACGCTTCTCAGAGCAAAAGCTTCTGCTCCGACTTTCTTTTTCTTCAATATTATCTTCATATGGGGGTTTTACTTCTCTGTAATCGGACCACTGTGCCGCAACTTGACGATGCCGTTTTCAACTGTGGAGTTGTGTTCTTGTTTATTGGTCTCTATAGTATCATAACAAGTGACCCTGGCATTGCATGCATAAAGGGTCTTAACCATCATCGTCCTGCTTTGGGAAATTGTATAGGCCAAAATAATCATCCCCTTTTCCTAATTGTTCTGTTTGGATTTATCAGTACCAAAGCTTCTTATCTAGTGTGCTCATCACTCTATAAATTAAAAGAAGTGTCCAGAGTTCCAACGTGTTACTCCACCGCAACCAGGACAATACTTCACAATTGTTACGTTCAGGAATCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006497 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0012505 GO:0016409 GO:0016740 GO:0016746 GO:0016747 GO:0018345 GO:0019538 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

140

Amino Acids

15.62

Weight (kDa)

8.65

Isoelectric Point (pI)

30.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	67 - 114	2.2e-07	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35813 FvH4_3g35813 FvH4_3g35813
malus_domestica	MD03G1096200.v1.1
prunus_persica	Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1
pyrus_communis	pycom03g07870
rosa_chinensis	RchiOBHm_Chr5g0064071
rosa_laevigata	RLG00000035699 RLG00000035701
rosa_multiflora	Rmu_sc0003547.1_g000007 Rmu_sc0005006.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016800
rosa_rugosa	Rorug05G0362000 Rorug05G0362100
rosa_samantha	Rh5AG420600 Rh5BG436200 Rh5CG459000 Rh5DG449400 Rh5DG449600
rosa_wichuraiana	Rw5G039510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 375
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	233, 381
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	59, 133
AjnI	CCWGG	2 cut(s)	187, 380
AluBI	AGCT	2 cut(s)	33, 305
AluI	AGCT	2 cut(s)	33, 305
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	289, 321
Bbv12I	GWGCWC	1 cut(s)	323
BccI	CCATC	1 cut(s)	225
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	2 cut(s)	189, 382
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	2 cut(s)	189, 382
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	189, 382
BmsI	GCATC	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 381
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	189, 382
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	233, 381
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	35
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	233, 381
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	323
BspACI	CCGC	2 cut(s)	110, 375
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	189, 382
Bst4CI	ACNGT	2 cut(s)	106, 137
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	2 cut(s)	189, 382
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	187, 380
BstSFI	CTRYAG	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	3 cut(s)	33, 249, 305
CviKI_1	RGCY	3 cut(s)	33, 249, 305
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	187, 380
EcoT22I	ATGCAT	1 cut(s)	203
FaeI	CATG	1 cut(s)	201
FatI	CATG	1 cut(s)	197
FauNDI	CATATG	2 cut(s)	72, 419
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	201
HindIII	AAGCTT	2 cut(s)	31, 303
HinfI	GANTC	1 cut(s)	413
Hpy188I	TCNGA	3 cut(s)	24, 43, 99
Hpy188III	TCNNGA	2 cut(s)	351, 410
HpyCH4III	ACNGT	2 cut(s)	106, 137
HpyCH4IV	ACGT	2 cut(s)	362, 405
HpyCH4V	TGCA	3 cut(s)	7, 197, 201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	2 cut(s)	362, 405
Hsp92II	CATG	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	7 cut(s)	174, 201, 240, 364, 367, 394, 395
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	2 cut(s)	362, 405
MaeIII	GTNAC	3 cut(s)	182, 365, 401
MboII	GAAGA	3 cut(s)	22, 47, 59
MfeI	CAATTG	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	4 cut(s)	238, 273, 335, 397
MmeI	TCCRAC	2 cut(s)	66, 383
Mph1103I	ATGCAT	1 cut(s)	203
MseI	TTAA	2 cut(s)	213, 338
MspR9I	CCNGG	2 cut(s)	189, 382
MunI	CAATTG	1 cut(s)	397
MvaI	CCWGG	2 cut(s)	189, 382
MwoI	GCNNNNNNNGC	1 cut(s)	198
NdeI	CATATG	2 cut(s)	72, 419
NlaIII	CATG	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	203
NspI	RCATGY	1 cut(s)	201
PaeI	GCATGC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	187, 380
PspGI	CCWGG	2 cut(s)	187, 380
PspPI	GGNCC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	213, 338
SatI	GCNGC	1 cut(s)	110
Sau96I	GGNCC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	189, 382
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	4 cut(s)	35, 307, 365, 408
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	99
SphI	GCATGC	1 cut(s)	201
Sse9I	AATT	4 cut(s)	238, 273, 335, 397
SsiI	CCGC	2 cut(s)	110, 375
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	187, 380
TaaI	ACNGT	2 cut(s)	106, 137
TaiI	ACGT	2 cut(s)	365, 408
TasI	AATT	4 cut(s)	238, 273, 335, 397
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	213, 338
Tru9I	TTAA	2 cut(s)	213, 338
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	99
XceI	RCATGY	1 cut(s)	201
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.