Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006397

Physical Location & Seq

Genomic Coordinates Reverse (-)

47904712 .. 47905613

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0362100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAACTTTGGGTTTCTTGGTAATCTCCTTTGGTTTAGAGCCCACCAATCAAACAGTCATCTCAAACCAACTAGTAGTGTCTTTGTTGAACAACCTGAGCGAGCCCACCAATCAAACAGTCATCTCAAATCAACTAGTAGTGTCTTTGTTGAACAACCTGAGCACAAGGCTGGTTTTGATCTCAAGTTGTTGGTTTCCTTTTTCCCATGGGTGGCGGTTGATTCTAAACATAAGAGTCGAACCCCATCCACTATCAATCGCCAGTTGCGAAGGCGTGCGCAACCTCACGCCAAGGTTGCTCCTAATAACTTTTTGCGCTTCAGGCCCTATGTTTCGAGGGTTCCATGGCACACTGGTGCAAGAGGTTTTCTTTCTCAGCTGTTTCCCAGATATGGGCATTATTGTGGGCCTAATTTTTCTAGTGGCAAGGATGGTGGATCTCTTGTTTGGGACAAGCGGCCGATTGATTGGTTGGATTTCTGCTGCTACTGCCATGACATTGGATATGACACTCATGATCAGGCTGAGCTGCTCAAGGCTGATTTAGCATTTCTTGAGTGCCTTGAGAAGCCTAATATGAGTACTAAAGGAGATGCTGGTGTCGCGCTCCTTTATAAGACAATGTGCACCACAGGTCTCAGGAATTTCCTTATACCATATAGAACTCACCTTGTGAAGCTGACATCAGGACAACCTTTGATTCAATTTGGATGGCTAAGCAATGTTAGATGGAGAGGTTGGAGTTTTCAGAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006497 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0012505 GO:0016409 GO:0016740 GO:0016746 GO:0016747 GO:0018345 GO:0019538 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

252

Amino Acids

28.96

Weight (kDa)

9.74

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35813 FvH4_3g35813 FvH4_3g35813
malus_domestica	MD03G1096200.v1.1
prunus_persica	Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1
pyrus_communis	pycom03g07870
rosa_chinensis	RchiOBHm_Chr5g0064071
rosa_laevigata	RLG00000035699 RLG00000035701
rosa_multiflora	Rmu_sc0003547.1_g000007 Rmu_sc0005006.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016800
rosa_rugosa	Rorug05G0362000 Rorug05G0362100
rosa_samantha	Rh5AG420600 Rh5BG436200 Rh5CG459000 Rh5DG449400 Rh5DG449600
rosa_wichuraiana	Rw5G039510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
Acc16I	TGCGCA	1 cut(s)	279
AccII	CGCG	1 cut(s)	605
AciI	CCGC	2 cut(s)	215, 457
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	1 cut(s)	304
AdeI	CACNNNGTG	1 cut(s)	673
AfaI	GTAC	1 cut(s)	583
AfiI	CCNNNNNNNGG	3 cut(s)	211, 392, 393
AgsI	TTSAA	3 cut(s)	89, 152, 704
AhlI	ACTAGT	2 cut(s)	71, 134
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	3 cut(s)	379, 529, 679
AluI	AGCT	3 cut(s)	379, 529, 679
Alw21I	GWGCWC	2 cut(s)	165, 629
Alw26I	GTCTC	1 cut(s)	641
Alw44I	GTGCAC	1 cut(s)	625
AlwI	GGATC	1 cut(s)	445
AoxI	GGCC	3 cut(s)	323, 407, 458
ApaLI	GTGCAC	1 cut(s)	625
ApeKI	GCWGC	2 cut(s)	483, 529
ApoI	RAATTY	1 cut(s)	643
AspLEI	GCGC	3 cut(s)	280, 318, 607
AspS9I	GGNCC	2 cut(s)	324, 407
AsuHPI	GGTGA	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	629
BanII	GRGCYC	2 cut(s)	43, 106
Bbv12I	GWGCWC	2 cut(s)	165, 629
BbvI	GCAGC	2 cut(s)	470, 516
BccI	CCATC	4 cut(s)	253, 425, 705, 723
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	641
BcuI	ACTAGT	2 cut(s)	71, 134
BfaI	CTAG	3 cut(s)	72, 135, 420
BisI	GCNGC	3 cut(s)	458, 484, 530
BlpI	GCTNAGC	2 cut(s)	525, 716
BlsI	GCNGC	3 cut(s)	459, 485, 531
BmcAI	AGTACT	1 cut(s)	583
BmgT120I	GGNCC	2 cut(s)	324, 407
BmiI	GGNNCC	1 cut(s)	342
BmsI	GCATC	1 cut(s)	583
Bpu10I	CCTNAGC	2 cut(s)	96, 159
Bpu1102I	GCTNAGC	2 cut(s)	525, 716
BpuEI	CTTGAG	4 cut(s)	167, 518, 575, 584
BsaI	GGTCTC	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	206, 291, 344
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 392, 393
Bse1I	ACTGG	2 cut(s)	262, 358
Bse3DI	GCAATG	1 cut(s)	727
BseDI	CCNNGG	3 cut(s)	206, 291, 344
BseGI	GGATG	3 cut(s)	245, 436, 716
BseLI	CCNNNNNNNGG	3 cut(s)	211, 392, 393
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	5 cut(s)	87, 150, 389, 516, 652
BseNI	ACTGG	2 cut(s)	262, 358
BseSI	GKGCMC	1 cut(s)	629
BseX3I	CGGCCG	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	470, 516
Bsh1236I	CGCG	1 cut(s)	605
Bsh1285I	CGRYCG	1 cut(s)	461
BshFI	GGCC	3 cut(s)	325, 409, 460
BsiEI	CGRYCG	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	165, 629
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	3 cut(s)	211, 392, 393
BsmAI	GTCTC	1 cut(s)	641
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	3 cut(s)	325, 409, 460
Bso31I	GGTCTC	1 cut(s)	641
Bsp1286I	GDGCHC	4 cut(s)	43, 106, 165, 629
Bsp143I	GATC	3 cut(s)	178, 437, 517
Bsp1720I	GCTNAGC	2 cut(s)	525, 716
Bsp19I	CCATGG	2 cut(s)	206, 344
BspACI	CCGC	2 cut(s)	215, 457
BspANI	GGCC	3 cut(s)	325, 409, 460
BspCNI	CTCAG	5 cut(s)	88, 151, 388, 517, 651
BspFNI	CGCG	1 cut(s)	605
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	641
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	262, 358
BssECI	CCNNGG	3 cut(s)	206, 291, 344
BssMI	GATC	3 cut(s)	178, 437, 517
BssT1I	CCWWGG	3 cut(s)	206, 291, 344
Bst4CI	ACNGT	2 cut(s)	56, 119
BstC8I	GCNNGC	2 cut(s)	102, 276
BstDEI	CTNAG	6 cut(s)	96, 159, 375, 525, 638, 716
BstDSI	CCRYGG	2 cut(s)	206, 344
BstF5I	GGATG	3 cut(s)	245, 436, 716
BstFNI	CGCG	1 cut(s)	605
BstHHI	GCGC	3 cut(s)	280, 318, 607
BstKTI	GATC	3 cut(s)	181, 440, 520
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	3 cut(s)	178, 437, 517
BstMCI	CGRYCG	1 cut(s)	461
BstMWI	GCNNNNNNNGC	5 cut(s)	296, 322, 489, 545, 602
BstSLI	GKGCMC	1 cut(s)	629
BstUI	CGCG	1 cut(s)	605
BstV1I	GCAGC	2 cut(s)	470, 516
BstX2I	RGATCY	1 cut(s)	437
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	437
BstZI	CGGCCG	1 cut(s)	458
BsuRI	GGCC	3 cut(s)	325, 409, 460
BtgI	CCRYGG	2 cut(s)	206, 344
BtsCI	GGATG	3 cut(s)	245, 436, 716
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	102, 276
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	3 cut(s)	280, 318, 607
Cfr13I	GGNCC	2 cut(s)	324, 407
Csp6I	GTAC	1 cut(s)	582
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	4 cut(s)	207, 345, 494, 515
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	6 cut(s)	96, 159, 375, 525, 638, 716
DpnI	GATC	3 cut(s)	180, 439, 519
DpnII	GATC	3 cut(s)	178, 437, 517
DraIII	CACNNNGTG	1 cut(s)	673
EaeI	YGGCCR	1 cut(s)	458
EagI	CGGCCG	1 cut(s)	458
EclXI	CGGCCG	1 cut(s)	458
Eco130I	CCWWGG	3 cut(s)	206, 291, 344
Eco24I	GRGCYC	2 cut(s)	43, 106
Eco31I	GGTCTC	1 cut(s)	641
Eco52I	CGGCCG	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	324
EcoT14I	CCWWGG	3 cut(s)	206, 291, 344
EcoT38I	GRGCYC	2 cut(s)	43, 106
ErhI	CCWWGG	3 cut(s)	206, 291, 344
FaeI	CATG	4 cut(s)	210, 348, 497, 518
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	4 cut(s)	206, 344, 493, 514
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	3 cut(s)	458, 484, 530
FokI	GGATG	3 cut(s)	232, 443, 723
FriOI	GRGCYC	2 cut(s)	43, 106
Fsp4HI	GCNGC	3 cut(s)	458, 484, 530
FspBI	CTAG	3 cut(s)	72, 135, 420
FspI	TGCGCA	1 cut(s)	279
GlaI	GCGC	3 cut(s)	279, 317, 606
GluI	GCNGC	3 cut(s)	458, 484, 530
HaeIII	GGCC	3 cut(s)	325, 409, 460
HhaI	GCGC	3 cut(s)	280, 318, 607
Hin1II	CATG	4 cut(s)	210, 348, 497, 518
Hin6I	GCGC	3 cut(s)	278, 316, 605
HinP1I	GCGC	3 cut(s)	278, 316, 605
HinfI	GANTC	3 cut(s)	221, 235, 700
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	1 cut(s)	627
Hpy188I	TCNGA	1 cut(s)	750
Hpy188III	TCNNGA	4 cut(s)	515, 554, 640, 687
Hpy8I	GTNNAC	1 cut(s)	627
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	2 cut(s)	56, 119
HpyCH4V	TGCA	2 cut(s)	359, 627
HpyF10VI	GCNNNNNNNGC	5 cut(s)	296, 322, 489, 545, 602
HpyF3I	CTNAG	6 cut(s)	96, 159, 375, 525, 638, 716
Hsp92II	CATG	4 cut(s)	210, 348, 497, 518
HspAI	GCGC	3 cut(s)	278, 316, 605
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	3 cut(s)	178, 437, 517
LmnI	GCTCC	2 cut(s)	304, 612
Lsp1109I	GCAGC	2 cut(s)	470, 516
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	3 cut(s)	72, 135, 420
MalI	GATC	3 cut(s)	180, 439, 519
MboI	GATC	3 cut(s)	178, 437, 517
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	4 cut(s)	43, 106, 165, 629
MluCI	AATT	3 cut(s)	412, 643, 704
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	2 cut(s)	453, 719
MnlI	CCTC	4 cut(s)	294, 330, 356, 728
MslI	CAYNNNNRTG	2 cut(s)	354, 402
MspA1I	CMGCKG	1 cut(s)	379
MvnI	CGCG	1 cut(s)	605
MwoI	GCNNNNNNNGC	5 cut(s)	296, 322, 489, 545, 602
NcoI	CCATGG	2 cut(s)	206, 344
NdeII	GATC	3 cut(s)	178, 437, 517
NlaIII	CATG	4 cut(s)	210, 348, 497, 518
NlaIV	GGNNCC	1 cut(s)	342
NsbI	TGCGCA	1 cut(s)	279
OliI	CACNNNNGTG	1 cut(s)	354
PagI	TCATGA	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	221, 700
PkrI	GCNGC	3 cut(s)	459, 485, 531
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PsiI	TTATAA	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	324, 407
PsuI	RGATCY	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
RseI	CAYNNNNRTG	2 cut(s)	354, 402
SatI	GCNGC	3 cut(s)	458, 484, 530
Sau3AI	GATC	3 cut(s)	178, 437, 517
Sau96I	GGNCC	2 cut(s)	324, 407
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	1 cut(s)	244
SduI	GDGCHC	4 cut(s)	43, 106, 165, 629
SfaNI	GCATC	1 cut(s)	583
SmiMI	CAYNNNNRTG	2 cut(s)	354, 402
SmlI	CTYRAG	4 cut(s)	182, 533, 554, 563
SmoI	CTYRAG	4 cut(s)	182, 533, 554, 563
SpeI	ACTAGT	2 cut(s)	71, 134
Sse9I	AATT	3 cut(s)	412, 643, 704
SsiI	CCGC	2 cut(s)	215, 457
SspMI	CTAG	3 cut(s)	72, 135, 420
StyI	CCWWGG	3 cut(s)	206, 291, 344
TaaI	ACNGT	2 cut(s)	56, 119
TaqI	TCGA	2 cut(s)	238, 335
TasI	AATT	3 cut(s)	412, 643, 704
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	1 cut(s)	460
TfiI	GAWTC	2 cut(s)	221, 700
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	2 cut(s)	483, 529
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	625
XapI	RAATTY	1 cut(s)	643
XspI	CTAG	3 cut(s)	72, 135, 420
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.