Rroxscaffold_1G00016800

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006397
Physical Location & Seq
Reverse (-)
20864655 .. 20867659
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016800.1

Sequence Viewer

Length: 1002 bp
ATGAAAATCCCAAAAGCGATGCTTGAAACACAGAACCAGAGCAATCCCCTAAGTCGGTCCAACCTAATTGGCCGTTGCATAGTCTCCTGTATCTTCGTCTTTGTCACTCACTTGGCTCTCTCAGTGATCCCTCGCTTCTTCTCCGCCTTCTCCTTTCTAACCCAACTCGCTCTCTCGGCTCTGCTGCTCCTGCTGCTCGTGGGTTTTGGCGGATGGTGTAGAAGAACGCTTCTTAGAGCAAAAGCTTCGGCTCCGGCTTTGGTCTTCTTCAATATTCTCTTCATTTGGGGGTTTTACTTCTCTGTTATCCGACCAGCTGTGCCGCAACTAAACGATGCCGTTTTCAACTGTGGAGTTGTCTTCCTGTTTATTGGTCTCTATAGTATCATAACAAGTGACCCTGGCATTGTTACAAATGGGTCTGCCTCTCCAGACCAGCATATGGAGAGCTCACTTTCTCAAGTTGATAAGGAGTTGGAGCCCTTAACAAGGGGTTTAGGCCATGAGTCAACTCAAGATTCAAGTTTGTTAATGAGGGTAAGATATTGCAAAACCTGCAAGGCATACATAAAGGGTCTTGACCATCATTGTCCTGCTTTTGGGAATTGTATAGGCCAAAATAATCATCCCCTTTTCTTAATTCTTCTGTTTGGATTTATCGGTACTGAAGCTTCTTATCTAGTGTGCTCATCACTCTTTGCGGCCAAATCCAGGATCTTGGATAGACCCTCAGAGCTTACTCTTTCTGAAAGTTTAGCTGTTAGCACAATTCTGTTCACCATTCTCCAACTGCTATGGCAGGTGGTGTTTTTGATATGGCACATATATTGTTTATGCGTGAACATCAGAACTGATGAGTGGATAAAATGGAAGAAGTATCCAGAGTTCCAACTTGTTATTCCACCCGAACCAGGACAAAGCTTCAGAAATATTAGGTTCTGGAATCCATATGACAAAGGCATTGTACAGAATGTGAAGGAGTTTCTAGCCATCCAGCACTAA

Protein Analysis

333

Amino Acids

37.61

Weight (kDa)

8.86

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 177 - 291 2.3e-20 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 790
Acc36I ACCTGC 2 cut(s) 563, 790
AccB7I CCANNNNNTGG 1 cut(s) 442
AciI CCGC 4 cut(s) 144, 210, 323, 701
AclWI GGATC 2 cut(s) 121, 722
AcoI YGGCCR 2 cut(s) 70, 702
AcuI CTGAAG 2 cut(s) 687, 907
AfaI GTAC 2 cut(s) 664, 966
AfiI CCNNNNNNNGG 6 cut(s) 54, 442, 489, 599, 711, 911
AgsI TTSAA 4 cut(s) 26, 271, 346, 522
AjnI CCWGG 3 cut(s) 400, 710, 910
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AluBI AGCT 7 cut(s) 245, 317, 450, 671, 736, 758, 921
AluI AGCT 7 cut(s) 245, 317, 450, 671, 736, 758, 921
Alw21I GWGCWC 2 cut(s) 452, 689
Alw26I GTCTC 2 cut(s) 88, 380
AlwI GGATC 2 cut(s) 121, 722
AoxI GGCC 4 cut(s) 70, 499, 613, 702
ApeKI GCWGC 2 cut(s) 184, 193
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 769
AvaII GGWCC 1 cut(s) 57
BanII GRGCYC 2 cut(s) 452, 483
BarI GAAGNNNNNNTAC 2 cut(s) 655, 687
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 256, 352
Bbv12I GWGCWC 2 cut(s) 452, 689
BbvI GCAGC 2 cut(s) 171, 180
BccI CCATC 3 cut(s) 207, 591, 998
BceAI ACGGC 2 cut(s) 57, 323
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 3 cut(s) 402, 712, 912
BciVI GTATCC 1 cut(s) 888
BcoDI GTCTC 2 cut(s) 88, 380
BfaI CTAG 2 cut(s) 680, 986
BfmI CTRYAG 1 cut(s) 379
BfuAI ACCTGC 2 cut(s) 563, 790
BfuI GTATCC 1 cut(s) 888
BisI GCNGC 4 cut(s) 185, 194, 323, 702
BlsI GCNGC 4 cut(s) 186, 195, 324, 703
Bme1390I CCNGG 3 cut(s) 402, 712, 912
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 252, 480
BmrFI CCNGG 3 cut(s) 402, 712, 912
BmsI GCATC 2 cut(s) 9, 325
BpiI GAAGAC 2 cut(s) 256, 352
BpmI CTGGAG 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 444, 498
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 400
Bsc4I CCNNNNNNNGG 6 cut(s) 54, 442, 489, 599, 711, 911
BseBI CCWGG 3 cut(s) 402, 712, 912
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 3 cut(s) 218, 625, 990
BseLI CCNNNNNNNGG 6 cut(s) 54, 442, 489, 599, 711, 911
BseMII CTCAG 2 cut(s) 135, 744
BseXI GCAGC 2 cut(s) 171, 180
BshFI GGCC 4 cut(s) 72, 501, 615, 704
BsiHKAI GWGCWC 2 cut(s) 452, 689
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 6 cut(s) 54, 442, 489, 599, 711, 911
BsmAI GTCTC 2 cut(s) 88, 380
BsnI GGCC 4 cut(s) 72, 501, 615, 704
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 452, 483, 689
Bsp1407I TGTACA 1 cut(s) 964
Bsp143I GATC 2 cut(s) 126, 714
BspACI CCGC 4 cut(s) 144, 210, 323, 701
BspANI GGCC 4 cut(s) 72, 501, 615, 704
BspCNI CTCAG 2 cut(s) 134, 743
BspLI GGNNCC 2 cut(s) 252, 480
BspMI ACCTGC 2 cut(s) 563, 790
BspPI GGATC 2 cut(s) 121, 722
BspTNI GGTCTC 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 964
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 2 cut(s) 126, 714
BssSI CACGAG 1 cut(s) 197
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 3 cut(s) 402, 712, 912
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 555
BstAUI TGTACA 1 cut(s) 964
BstDEI CTNAG 4 cut(s) 50, 121, 233, 730
BstENI CCTNNNNNAGG 1 cut(s) 487
BstF5I GGATG 3 cut(s) 218, 625, 990
BstKTI GATC 2 cut(s) 129, 717
BstMAI GTCTC 2 cut(s) 88, 380
BstMBI GATC 2 cut(s) 126, 714
BstMWI GCNNNNNNNGC 4 cut(s) 176, 190, 193, 555
BstNI CCWGG 3 cut(s) 402, 712, 912
BstSCI CCNGG 3 cut(s) 400, 710, 910
BstSFI CTRYAG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 171, 180
BstV2I GAAGAC 2 cut(s) 256, 352
BstX2I RGATCY 1 cut(s) 714
BstXI CCANNNNNNTGG 1 cut(s) 718
BstYI RGATCY 1 cut(s) 714
BsuI GTATCC 1 cut(s) 888
BsuRI GGCC 4 cut(s) 72, 501, 615, 704
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 3 cut(s) 218, 625, 990
BtsIMutI CAGTG 1 cut(s) 129
BveI ACCTGC 2 cut(s) 563, 790
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 663, 965
CviAII CATG 1 cut(s) 503
CviQI GTAC 2 cut(s) 663, 965
DdeI CTNAG 4 cut(s) 50, 121, 233, 730
DpnI GATC 2 cut(s) 128, 716
DpnII GATC 2 cut(s) 126, 714
EaeI YGGCCR 2 cut(s) 70, 702
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 2 cut(s) 133, 225
Ecl136II GAGCTC 1 cut(s) 450
Eco24I GRGCYC 2 cut(s) 452, 483
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 450
Eco57I CTGAAG 2 cut(s) 687, 907
EcoICRI GAGCTC 1 cut(s) 450
EcoNI CCTNNNNNAGG 1 cut(s) 487
EcoRII CCWGG 3 cut(s) 400, 710, 910
EcoT38I GRGCYC 2 cut(s) 452, 483
FaeI CATG 1 cut(s) 506
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 1 cut(s) 502
FauNDI CATATG 2 cut(s) 441, 949
Fnu4HI GCNGC 4 cut(s) 185, 194, 323, 702
FokI GGATG 3 cut(s) 225, 612, 977
FriOI GRGCYC 2 cut(s) 452, 483
Fsp4HI GCNGC 4 cut(s) 185, 194, 323, 702
FspBI CTAG 2 cut(s) 680, 986
GluI GCNGC 4 cut(s) 185, 194, 323, 702
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 4 cut(s) 72, 501, 615, 704
HapII CCGG 1 cut(s) 254
Hin1II CATG 1 cut(s) 506
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 3 cut(s) 243, 669, 919
HinfI GANTC 3 cut(s) 506, 518, 943
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 769
Hpy166II GTNNAC 3 cut(s) 510, 777, 841
Hpy188I TCNGA 5 cut(s) 311, 733, 748, 848, 926
Hpy188III TCNNGA 5 cut(s) 431, 515, 578, 881, 940
Hpy8I GTNNAC 3 cut(s) 510, 777, 841
HpyAV CCTTC 2 cut(s) 157, 970
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4V TGCA 3 cut(s) 78, 549, 558
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 190, 193, 555
HpyF3I CTNAG 4 cut(s) 50, 121, 233, 730
Hsp92II CATG 1 cut(s) 506
Kzo9I GATC 2 cut(s) 126, 714
LmnI GCTCC 3 cut(s) 192, 256, 478
Lsp1109I GCAGC 2 cut(s) 171, 180
LweI GCATC 2 cut(s) 9, 325
MaeI CTAG 2 cut(s) 680, 986
MaeIII GTNAC 3 cut(s) 103, 395, 409
MalI GATC 2 cut(s) 128, 716
MboI GATC 2 cut(s) 126, 714
MboII GAAGA 9 cut(s) 85, 130, 234, 256, 259, 271, 352, 635, 883
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 3 cut(s) 452, 483, 689
MluCI AATT 4 cut(s) 66, 604, 639, 768
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 5 cut(s) 84, 334, 456, 811, 913
MnlI CCTC 4 cut(s) 141, 436, 528, 739
MseI TTAA 3 cut(s) 485, 530, 638
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 3 cut(s) 402, 712, 912
MvaI CCWGG 3 cut(s) 402, 712, 912
MwoI GCNNNNNNNGC 4 cut(s) 176, 190, 193, 555
NdeI CATATG 2 cut(s) 441, 949
NdeII GATC 2 cut(s) 126, 714
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 2 cut(s) 252, 480
NmeAIII GCCGAG 1 cut(s) 155
NmuCI GTSAC 2 cut(s) 103, 395
PaqCI CACCTGC 1 cut(s) 790
PfeI GAWTC 2 cut(s) 518, 943
PflMI CCANNNNNTGG 1 cut(s) 442
PfoI TCCNGGA 1 cut(s) 710
PkrI GCNGC 4 cut(s) 186, 195, 324, 703
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
Psp124BI GAGCTC 1 cut(s) 452
Psp6I CCWGG 3 cut(s) 400, 710, 910
PspGI CCWGG 3 cut(s) 400, 710, 910
PspN4I GGNNCC 2 cut(s) 252, 480
PspPI GGNCC 1 cut(s) 57
PsrI GAACNNNNNNTAC 2 cut(s) 869, 901
PsuI RGATCY 1 cut(s) 714
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 2 cut(s) 664, 966
RsaNI GTAC 2 cut(s) 663, 965
SacI GAGCTC 1 cut(s) 452
SaqAI TTAA 3 cut(s) 485, 530, 638
SatI GCNGC 4 cut(s) 185, 194, 323, 702
Sau3AI GATC 2 cut(s) 126, 714
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 3 cut(s) 402, 712, 912
SduI GDGCHC 3 cut(s) 452, 483, 689
SfaNI GCATC 2 cut(s) 9, 325
SfcI CTRYAG 1 cut(s) 379
SinI GGWCC 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 459, 513
SmoI CTYRAG 2 cut(s) 459, 513
Sse9I AATT 4 cut(s) 66, 604, 639, 768
SsiI CCGC 4 cut(s) 144, 210, 323, 701
SspI AATATT 2 cut(s) 274, 931
SspMI CTAG 2 cut(s) 680, 986
SstI GAGCTC 1 cut(s) 452
StyD4I CCNGG 3 cut(s) 400, 710, 910
TaaI ACNGT 1 cut(s) 350
TaqII GACCGA 1 cut(s) 45
TasI AATT 4 cut(s) 66, 604, 639, 768
TatI WGTACW 1 cut(s) 964
TauI GCSGC 2 cut(s) 325, 704
TfiI GAWTC 2 cut(s) 518, 943
Tru1I TTAA 3 cut(s) 485, 530, 638
Tru9I TTAA 3 cut(s) 485, 530, 638
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 2 cut(s) 103, 395
TseI GCWGC 2 cut(s) 184, 193
Tsp45I GTSAC 2 cut(s) 103, 395
TspDTI ATGAA 2 cut(s) 17, 271
TspRI CASTG 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 487
XspI CTAG 2 cut(s) 680, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.