FvH4_3g36400

Zinc finger RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012599
Physical Location & Seq
Forward (+)
31203864 .. 31207199
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36400.t3

Sequence Viewer

Length: 642 bp
ATGTGGATGTTCAAAACTTCAAATCTTTCCCAAAACCTGTTGCGACCGAAGATGGGGTTCATTTGCCATGTCAACGAACAAAGATCAAGCAACCGGTTGGGATTTGGCCATGTCCACCTGCGAATATTTATGATTTTGCAGGGTATCTCAGTACCTTTAACTTGGAGACAGTACTTCCCTACGACAAATCAGAATCCCACCTTGTTGAGTAACAATACTACTCCTCGATGGAGTGAGACTAACAAACCTCTACCTCTGCCTCCTAGAGATAGCACAACAAAACTATTTTGTGACATATGCAAGATTTTTTGTGACACTAAGATGGTACTTGATAAGCATAAAATGGGAAAGAAGCACCAGATGAACCTGGGGAAATTGAAAGGCAAAACTATTACTGGACAAACGAGTAAGAAGAAGGCAGATTCTGCACCTGAAGACGATTTGCAGACTAAGAAACGGAGGGTTATTGAAGGTGGTGCGGCACCCCATAGTTTAAGGACATGTTCCATATGTAACGTGGTCAGTATTAGTGCGACAGATTTCTATAAACATCTTGCCGGACAGCGACATAGAGAAGCTGCTGCATCGATGAGTAATGCAGCTGGGTCGAGTAGCTACGGCCAGCTGAGAATAAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

214

Amino Acids

24.02

Weight (kDa)

10.17

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012599)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36400 FvH4_3g36400 FvH4_3g36400
malus_domestica MD00G1013500.v1.1 MD03G1090800.v1.1
prunus_persica Prupe.6G075200_v2.0.a1
pyrus_communis pycom03g07270 pycom11g08730
rosa_chinensis RchiOBHm_Chr5g0065291
rosa_laevigata RLG00000035778
rosa_multiflora Rmu_co8470125.1_g000001
rosa_roxburghii Rroxscaffold_1G00015900
rosa_rugosa Rorug05G0371000
rosa_samantha Rh5AG428800 Rh5BG444100 Rh5CG466300 Rh5DG456200 Rh5DG456300
rosa_wichuraiana Rw5G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 126
Acc36I ACCTGC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 481
AciI CCGC 1 cut(s) 479
AcoI YGGCCR 2 cut(s) 106, 619
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 3 cut(s) 153, 173, 327
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 500
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 4 cut(s) 13, 21, 379, 470
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 4 cut(s) 578, 602, 615, 625
AluI AGCT 4 cut(s) 578, 602, 615, 625
Alw26I GTCTC 2 cut(s) 160, 230
AlwNI CAGNNNCTG 1 cut(s) 425
AoxI GGCC 2 cut(s) 106, 619
ApeKI GCWGC 3 cut(s) 578, 581, 599
AsiGI ACCGGT 1 cut(s) 93
BalI TGGCCA 1 cut(s) 108
BanI GGYRCC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 565, 568, 611
BccI CCATC 3 cut(s) 46, 222, 316
BceAI ACGGC 1 cut(s) 634
BcgI CGANNNNNNTGC 2 cut(s) 588, 622
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 2 cut(s) 160, 230
BfaI CTAG 2 cut(s) 264, 640
BfuAI ACCTGC 1 cut(s) 126
BisI GCNGC 4 cut(s) 480, 579, 582, 600
BlsI GCNGC 4 cut(s) 481, 580, 583, 601
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 368
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 441
Bsa29I ATCGAT 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 368
BseCI ATCGAT 1 cut(s) 587
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 2 cut(s) 162, 617
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 3 cut(s) 565, 568, 611
BseYI CCCAGC 1 cut(s) 602
BsgI GTGCAG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 2 cut(s) 108, 621
BshNI GGYRCC 1 cut(s) 481
BshTI ACCGGT 1 cut(s) 93
BshVI ATCGAT 1 cut(s) 587
BsiEI CGRYCG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 94, 558
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 160, 230
BsnI GGCC 2 cut(s) 108, 621
Bsp143I GATC 1 cut(s) 83
BspACI CCGC 1 cut(s) 479
BspANI GGCC 2 cut(s) 108, 621
BspCNI CTCAG 2 cut(s) 161, 618
BspDI ATCGAT 1 cut(s) 587
BspLI GGNNCC 1 cut(s) 483
BspMI ACCTGC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 481
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 623
BstDEI CTNAG 4 cut(s) 148, 318, 450, 626
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 1 cut(s) 86
BstMAI GTCTC 2 cut(s) 160, 230
BstMBI GATC 1 cut(s) 83
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 366
BstV1I GCAGC 3 cut(s) 565, 568, 611
BstV2I GAAGAC 1 cut(s) 441
Bsu15I ATCGAT 1 cut(s) 587
BsuRI GGCC 2 cut(s) 108, 621
BsuTUI ATCGAT 1 cut(s) 587
BtsCI GGATG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 623
CaiI CAGNNNCTG 1 cut(s) 425
Cfr10I RCCGGY 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 587
Csp6I GTAC 3 cut(s) 152, 172, 326
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 3 cut(s) 68, 110, 501
CviJI RGCY 6 cut(s) 108, 578, 602, 615, 621, 625
CviKI_1 RGCY 6 cut(s) 108, 578, 602, 615, 621, 625
CviQI GTAC 3 cut(s) 152, 172, 326
DdeI CTNAG 4 cut(s) 148, 318, 450, 626
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
EaeI YGGCCR 2 cut(s) 106, 619
Eco57I CTGAAG 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 366
FaeI CATG 3 cut(s) 71, 113, 504
FatI CATG 3 cut(s) 67, 109, 500
FauNDI CATATG 2 cut(s) 296, 509
Fnu4HI GCNGC 4 cut(s) 480, 579, 582, 600
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 4 cut(s) 480, 579, 582, 600
FspBI CTAG 2 cut(s) 264, 640
GluI GCNGC 4 cut(s) 480, 579, 582, 600
GsaI CCCAGC 1 cut(s) 606
HaeIII GGCC 2 cut(s) 108, 621
HapII CCGG 2 cut(s) 94, 558
Hin1II CATG 3 cut(s) 71, 113, 504
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 2 cut(s) 193, 422
HpaII CCGG 2 cut(s) 94, 558
Hpy166II GTNNAC 2 cut(s) 73, 115
Hpy188I TCNGA 1 cut(s) 192
Hpy8I GTNNAC 2 cut(s) 73, 115
HpyAV CCTTC 2 cut(s) 409, 464
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 6 cut(s) 139, 300, 428, 445, 584, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 4 cut(s) 148, 318, 450, 626
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 3 cut(s) 71, 113, 504
Kzo9I GATC 1 cut(s) 83
Lsp1109I GCAGC 3 cut(s) 565, 568, 611
LweI GCATC 1 cut(s) 593
MaeI CTAG 2 cut(s) 264, 640
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 4 cut(s) 209, 290, 311, 512
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 3 cut(s) 61, 424, 446
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 1 cut(s) 374
MluNI TGGCCA 1 cut(s) 108
MnlI CCTC 5 cut(s) 234, 258, 264, 270, 453
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 2 cut(s) 158, 494
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 602, 625
MspI CCGG 2 cut(s) 94, 558
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 425
NdeI CATATG 2 cut(s) 296, 509
NdeII GATC 1 cut(s) 83
NlaIII CATG 3 cut(s) 71, 113, 504
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 2 cut(s) 290, 311
NspI RCATGY 1 cut(s) 504
PaqCI CACCTGC 1 cut(s) 126
PciI ACATGT 1 cut(s) 500
PfeI GAWTC 2 cut(s) 193, 422
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 4 cut(s) 481, 580, 583, 601
PscI ACATGT 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 483
PstNI CAGNNNCTG 1 cut(s) 425
PvuII CAGCTG 2 cut(s) 602, 625
RsaI GTAC 3 cut(s) 153, 173, 327
RsaNI GTAC 3 cut(s) 152, 172, 326
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 2 cut(s) 158, 494
SatI GCNGC 4 cut(s) 480, 579, 582, 600
Sau3AI GATC 1 cut(s) 83
ScaI AGTACT 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 368
SfaNI GCATC 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 1 cut(s) 374
SsiI CCGC 1 cut(s) 479
SspI AATATT 1 cut(s) 126
SspMI CTAG 2 cut(s) 264, 640
StyD4I CCNGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 519
TaqI TCGA 3 cut(s) 226, 587, 608
TaqII GACCGA 1 cut(s) 61
TasI AATT 1 cut(s) 374
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 2 cut(s) 193, 422
Tru1I TTAA 2 cut(s) 158, 494
Tru9I TTAA 2 cut(s) 158, 494
TseFI GTSAC 2 cut(s) 290, 311
TseI GCWGC 3 cut(s) 578, 581, 599
Tsp45I GTSAC 2 cut(s) 290, 311
TspDTI ATGAA 2 cut(s) 49, 377
TspGWI ACGGA 1 cut(s) 472
XceI RCATGY 1 cut(s) 504
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XspI CTAG 2 cut(s) 264, 640
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.