Rh5DG456200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
72663034 .. 72663339
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG456200.1

Sequence Viewer

Length: 306 bp
ATGGCCCAACAAAAAGTTACTGTTATCAATTTCCCATACATGGTCGACGCCACTGTTTACTTCGTCTTGCTTGTATCGACCGCTAATCTCACCTTCCTTCACTGCATTTACATATTTTTTTTTTTGTTTTGGCTGCTTCAAATAAAGAGCTCAAATCAGAGCTCTACTGGATTAAAGAGCTTCATTGCATGCAAGCCACTTTGCCACCTTCAATTTCAGATATCTCCAAATTCAGAATCTGCCAAAGTAACAATTTCCTTTGCTCCCTCATCATTCAGATTTCGGAATTCCGGCGAAGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.46

Weight (kDa)

9.22

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012599)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AciI CCGC 1 cut(s) 81
AcsI RAATTY 2 cut(s) 229, 286
AcyI GRCGYC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 2 cut(s) 140, 212
AluBI AGCT 3 cut(s) 150, 162, 180
AluI AGCT 3 cut(s) 150, 162, 180
Alw21I GWGCWC 2 cut(s) 152, 164
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 2 cut(s) 229, 286
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 82
BanII GRGCYC 2 cut(s) 152, 164
Bbv12I GWGCWC 2 cut(s) 152, 164
BbvI GCAGC 1 cut(s) 120
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 4
BsaHI GRCGYC 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 81
BsiHKAI GWGCWC 2 cut(s) 152, 164
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 40
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 152, 164
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 22, 55
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 190, 194
BstMCI CGRYCG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 51, 100
Cac8I GCNNGC 2 cut(s) 190, 194
CaiI CAGNNNCTG 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 56
CviAII CATG 2 cut(s) 40, 189
CviJI RGCY 6 cut(s) 5, 133, 150, 162, 180, 196
CviKI_1 RGCY 6 cut(s) 5, 133, 150, 162, 180, 196
Ecl136II GAGCTC 2 cut(s) 150, 162
Eco24I GRGCYC 2 cut(s) 152, 164
Eco32I GATATC 1 cut(s) 222
Eco53kI GAGCTC 2 cut(s) 150, 162
EcoICRI GAGCTC 2 cut(s) 150, 162
EcoRI GAATTC 1 cut(s) 286
EcoRV GATATC 1 cut(s) 222
EcoT38I GRGCYC 2 cut(s) 152, 164
FaeI CATG 2 cut(s) 43, 192
FaiI YATR 4 cut(s) 37, 41, 113, 190
FatI CATG 2 cut(s) 39, 188
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 134
FriOI GRGCYC 2 cut(s) 152, 164
Fsp4HI GCNGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 291
HgaI GACGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 43, 192
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 46, 58
Hpy188I TCNGA 5 cut(s) 159, 219, 235, 278, 285
Hpy8I GTNNAC 2 cut(s) 46, 58
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 4 cut(s) 103, 107, 218, 290
HpyCH4III ACNGT 2 cut(s) 22, 55
HpyCH4V TGCA 3 cut(s) 105, 188, 192
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 43, 192
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 1 cut(s) 153
Lsp1109I GCAGC 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 16, 247
MhlI GDGCHC 2 cut(s) 152, 164
MluCI AATT 5 cut(s) 28, 212, 229, 252, 286
MnlI CCTC 1 cut(s) 277
MseI TTAA 1 cut(s) 173
MspI CCGG 1 cut(s) 291
NlaIII CATG 2 cut(s) 43, 192
NspI RCATGY 1 cut(s) 192
PaeI GCATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 135
Psp124BI GAGCTC 2 cut(s) 152, 164
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 239
SacI GAGCTC 2 cut(s) 152, 164
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 2 cut(s) 152, 164
SetI ASST 6 cut(s) 95, 152, 164, 182, 210, 301
SgeI CNNG 6 cut(s) 52, 79, 83, 180, 201, 205
SphI GCATGC 1 cut(s) 192
Sse9I AATT 5 cut(s) 28, 212, 229, 252, 286
SsiI CCGC 1 cut(s) 81
SstI GAGCTC 2 cut(s) 152, 164
TaaI ACNGT 2 cut(s) 22, 55
TaqI TCGA 2 cut(s) 45, 77
TasI AATT 5 cut(s) 28, 212, 229, 252, 286
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 2 cut(s) 58, 107
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 172
TspRI CASTG 2 cut(s) 58, 107
XapI RAATTY 2 cut(s) 229, 286
XceI RCATGY 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.