Zinc finger RNA-binding
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g36400 FvH4_3g36400 FvH4_3g36400 |
| malus_domestica | MD00G1013500.v1.1 MD03G1090800.v1.1 |
| prunus_persica | Prupe.6G075200_v2.0.a1 |
| pyrus_communis | pycom03g07270 pycom11g08730 |
| rosa_chinensis | RchiOBHm_Chr5g0065291 |
| rosa_laevigata | RLG00000035778 |
| rosa_multiflora | Rmu_co8470125.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00015900 |
| rosa_rugosa | Rorug05G0371000 |
| rosa_samantha | Rh5AG428800 Rh5BG444100 Rh5CG466300 Rh5DG456200 Rh5DG456300 |
| rosa_wichuraiana | Rw5G040250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 545 |
| AciI | CCGC | 2 cut(s) | 148, 253 |
| AcsI | RAATTY | 2 cut(s) | 112, 133 |
| AcuI | CTGAAG | 2 cut(s) | 102, 408 |
| AfaI | GTAC | 2 cut(s) | 282, 460 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 163 |
| AflII | CTTAAG | 1 cut(s) | 221 |
| AgsI | TTSAA | 3 cut(s) | 203, 334, 425 |
| AluBI | AGCT | 6 cut(s) | 145, 206, 244, 557, 570, 580 |
| AluI | AGCT | 6 cut(s) | 145, 206, 244, 557, 570, 580 |
| Alw21I | GWGCWC | 1 cut(s) | 80 |
| Alw26I | GTCTC | 2 cut(s) | 54, 75 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 145 |
| AoxI | GGCC | 1 cut(s) | 53 |
| ApeKI | GCWGC | 5 cut(s) | 145, 250, 434, 533, 536 |
| ApoI | RAATTY | 2 cut(s) | 112, 133 |
| AspS9I | GGNCC | 1 cut(s) | 54 |
| BbsI | GAAGAC | 1 cut(s) | 396 |
| Bbv12I | GWGCWC | 1 cut(s) | 80 |
| BbvI | GCAGC | 5 cut(s) | 132, 262, 446, 520, 523 |
| BccI | CCATC | 1 cut(s) | 271 |
| BcoDI | GTCTC | 2 cut(s) | 54, 75 |
| BfmI | CTRYAG | 1 cut(s) | 571 |
| BfrI | CTTAAG | 1 cut(s) | 221 |
| BglII | AGATCT | 1 cut(s) | 217 |
| BisI | GCNGC | 5 cut(s) | 146, 251, 435, 534, 537 |
| BlsI | GCNGC | 5 cut(s) | 147, 252, 436, 535, 538 |
| BmgT120I | GGNCC | 1 cut(s) | 54 |
| BmrI | ACTGGG | 1 cut(s) | 13 |
| BmsI | GCATC | 1 cut(s) | 520 |
| BmuI | ACTGGG | 1 cut(s) | 13 |
| BpiI | GAAGAC | 1 cut(s) | 396 |
| BpuEI | CTTGAG | 2 cut(s) | 179, 266 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 163 |
| Bse1I | ACTGG | 2 cut(s) | 19, 355 |
| BseGI | GGATG | 1 cut(s) | 282 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 163 |
| BseMII | CTCAG | 1 cut(s) | 572 |
| BseNI | ACTGG | 2 cut(s) | 19, 355 |
| BseXI | GCAGC | 5 cut(s) | 132, 262, 446, 520, 523 |
| BseYI | CCCAGC | 1 cut(s) | 557 |
| BsgI | GTGCAG | 1 cut(s) | 453 |
| BshFI | GGCC | 1 cut(s) | 55 |
| BsiHKAI | GWGCWC | 1 cut(s) | 80 |
| BslFI | GGGAC | 2 cut(s) | 243, 574 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 163 |
| BsmAI | GTCTC | 2 cut(s) | 54, 75 |
| BsmFI | GGGAC | 2 cut(s) | 243, 574 |
| BsnI | GGCC | 1 cut(s) | 55 |
| Bsp1286I | GDGCHC | 1 cut(s) | 80 |
| Bsp143I | GATC | 1 cut(s) | 217 |
| BspACI | CCGC | 2 cut(s) | 148, 253 |
| BspANI | GGCC | 1 cut(s) | 55 |
| BspCNI | CTCAG | 1 cut(s) | 573 |
| BspTI | CTTAAG | 1 cut(s) | 221 |
| BsrI | ACTGG | 2 cut(s) | 19, 355 |
| BssMI | GATC | 1 cut(s) | 217 |
| Bst4CI | ACNGT | 1 cut(s) | 346 |
| BstAFI | CTTAAG | 1 cut(s) | 221 |
| BstC8I | GCNNGC | 1 cut(s) | 578 |
| BstDEI | CTNAG | 3 cut(s) | 58, 405, 581 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 161 |
| BstF5I | GGATG | 1 cut(s) | 282 |
| BstKTI | GATC | 1 cut(s) | 220 |
| BstMAI | GTCTC | 2 cut(s) | 54, 75 |
| BstMBI | GATC | 1 cut(s) | 217 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 104, 250, 259 |
| BstSFI | CTRYAG | 1 cut(s) | 571 |
| BstV1I | GCAGC | 5 cut(s) | 132, 262, 446, 520, 523 |
| BstV2I | GAAGAC | 1 cut(s) | 396 |
| BstX2I | RGATCY | 1 cut(s) | 217 |
| BstYI | RGATCY | 1 cut(s) | 217 |
| BsuRI | GGCC | 1 cut(s) | 55 |
| BtsCI | GGATG | 1 cut(s) | 282 |
| Cac8I | GCNNGC | 1 cut(s) | 578 |
| CaiI | CAGNNNCTG | 1 cut(s) | 145 |
| Cfr13I | GGNCC | 1 cut(s) | 54 |
| Csp6I | GTAC | 2 cut(s) | 281, 459 |
| CviJI | RGCY | 8 cut(s) | 55, 145, 206, 244, 557, 570, 576, 580 |
| CviKI_1 | RGCY | 8 cut(s) | 55, 145, 206, 244, 557, 570, 576, 580 |
| CviQI | GTAC | 2 cut(s) | 281, 459 |
| DdeI | CTNAG | 3 cut(s) | 58, 405, 581 |
| DpnI | GATC | 1 cut(s) | 219 |
| DpnII | GATC | 1 cut(s) | 217 |
| DraI | TTTAAA | 1 cut(s) | 111 |
| Eco57I | CTGAAG | 2 cut(s) | 102, 408 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 161 |
| FaiI | YATR | 8 cut(s) | 234, 294, 444, 464, 466, 501, 525, 545 |
| FaqI | GGGAC | 2 cut(s) | 243, 574 |
| FauI | CCCGC | 1 cut(s) | 246 |
| Fnu4HI | GCNGC | 5 cut(s) | 146, 251, 435, 534, 537 |
| FokI | GGATG | 1 cut(s) | 289 |
| Fsp4HI | GCNGC | 5 cut(s) | 146, 251, 435, 534, 537 |
| GluI | GCNGC | 5 cut(s) | 146, 251, 435, 534, 537 |
| GsaI | CCCAGC | 1 cut(s) | 561 |
| HaeIII | GGCC | 1 cut(s) | 55 |
| Hpy188I | TCNGA | 2 cut(s) | 26, 82 |
| Hpy188III | TCNNGA | 1 cut(s) | 140 |
| HpyAV | CCTTC | 2 cut(s) | 157, 419 |
| HpyCH4III | ACNGT | 1 cut(s) | 346 |
| HpyCH4IV | ACGT | 3 cut(s) | 9, 93, 471 |
| HpyCH4V | TGCA | 7 cut(s) | 119, 127, 262, 268, 400, 434, 539 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 104, 250, 259 |
| HpyF3I | CTNAG | 3 cut(s) | 58, 405, 581 |
| HpySE526I | ACGT | 3 cut(s) | 9, 93, 471 |
| Kzo9I | GATC | 1 cut(s) | 217 |
| LmnI | GCTCC | 2 cut(s) | 142, 554 |
| LpnPI | CCDG | 9 cut(s) | 32, 125, 164, 326, 336, 399, 498, 543, 590 |
| Lsp1109I | GCAGC | 5 cut(s) | 132, 262, 446, 520, 523 |
| LweI | GCATC | 1 cut(s) | 520 |
| MaeII | ACGT | 3 cut(s) | 9, 93, 471 |
| MaeIII | GTNAC | 3 cut(s) | 10, 346, 467 |
| MalI | GATC | 1 cut(s) | 219 |
| MboI | GATC | 1 cut(s) | 217 |
| MboII | GAAGA | 3 cut(s) | 95, 379, 401 |
| MflI | RGATCY | 1 cut(s) | 217 |
| MhlI | GDGCHC | 1 cut(s) | 80 |
| MluCI | AATT | 5 cut(s) | 112, 122, 133, 329, 592 |
| MnlI | CCTC | 1 cut(s) | 408 |
| MseI | TTAA | 3 cut(s) | 110, 222, 449 |
| MslI | CAYNNNNRTG | 1 cut(s) | 528 |
| MspA1I | CMGCKG | 2 cut(s) | 253, 580 |
| MspCI | CTTAAG | 1 cut(s) | 221 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 104, 250, 259 |
| NdeII | GATC | 1 cut(s) | 217 |
| NmeAIII | GCCGAG | 1 cut(s) | 31 |
| NmuCI | GTSAC | 1 cut(s) | 10 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 233 |
| PkrI | GCNGC | 5 cut(s) | 147, 252, 436, 535, 538 |
| PsiI | TTATAA | 1 cut(s) | 545 |
| PspFI | CCCAGC | 1 cut(s) | 557 |
| PspPI | GGNCC | 1 cut(s) | 54 |
| PstNI | CAGNNNCTG | 1 cut(s) | 145 |
| PsuI | RGATCY | 1 cut(s) | 217 |
| PvuII | CAGCTG | 1 cut(s) | 580 |
| RsaI | GTAC | 2 cut(s) | 282, 460 |
| RsaNI | GTAC | 2 cut(s) | 281, 459 |
| RseI | CAYNNNNRTG | 1 cut(s) | 528 |
| SaqAI | TTAA | 3 cut(s) | 110, 222, 449 |
| SatI | GCNGC | 5 cut(s) | 146, 251, 435, 534, 537 |
| Sau3AI | GATC | 1 cut(s) | 217 |
| Sau96I | GGNCC | 1 cut(s) | 54 |
| SduI | GDGCHC | 1 cut(s) | 80 |
| SfaNI | GCATC | 1 cut(s) | 520 |
| SfcI | CTRYAG | 1 cut(s) | 571 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 528 |
| SmlI | CTYRAG | 3 cut(s) | 158, 221, 245 |
| SmoI | CTYRAG | 3 cut(s) | 158, 221, 245 |
| Sse9I | AATT | 5 cut(s) | 112, 122, 133, 329, 592 |
| SsiI | CCGC | 2 cut(s) | 148, 253 |
| TaaI | ACNGT | 1 cut(s) | 346 |
| TaiI | ACGT | 3 cut(s) | 12, 96, 474 |
| TasI | AATT | 5 cut(s) | 112, 122, 133, 329, 592 |
| TatI | WGTACW | 1 cut(s) | 458 |
| Tru1I | TTAA | 3 cut(s) | 110, 222, 449 |
| Tru9I | TTAA | 3 cut(s) | 110, 222, 449 |
| TseFI | GTSAC | 1 cut(s) | 10 |
| TseI | GCWGC | 5 cut(s) | 145, 250, 434, 533, 536 |
| Tsp45I | GTSAC | 1 cut(s) | 10 |
| TspDTI | ATGAA | 1 cut(s) | 332 |
| TspGWI | ACGGA | 1 cut(s) | 427 |
| Vha464I | CTTAAG | 1 cut(s) | 221 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 161 |
| XapI | RAATTY | 2 cut(s) | 112, 133 |