Rw5G040250

Zinc finger RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0012599
Physical Location & Seq
Forward (+)
71038285 .. 71041789
3505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G040250.1

Sequence Viewer

Length: 360 bp
ATGTCTCGGCCCTTAGTTGAGATGTCTCGGTGCTCTGAAGAAATGGACGTTGCGATTGCAAAATTGCAACAAAATTTTCAGGAGCTGCGGAACAACCTTGAGAAGGCATTTTTAGAGCAGGGTAGAGCGTTATTGAGATTTGAAGCTCAATGGAAAGATCTTAAGACGGGACACACGAGAGAGCTTGAGCAGCGTGGTCTGCAACTGCAACAAAGGGGAATCTTAGCACCTTTAACTGGGACACAGCACTTCCTCCCGCAAATCAGAATCCCACCTTGTGGAGTAACAGTACTACTCCTCGATGGAGTGACACCAATACCCCTCTTCCTCCTAGAGATAGCACAACAAACTTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

119

Amino Acids

13.62

Weight (kDa)

6.73

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012599)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36400 FvH4_3g36400 FvH4_3g36400
malus_domestica MD00G1013500.v1.1 MD03G1090800.v1.1
prunus_persica Prupe.6G075200_v2.0.a1
pyrus_communis pycom03g07270 pycom11g08730
rosa_chinensis RchiOBHm_Chr5g0065291
rosa_laevigata RLG00000035778
rosa_multiflora Rmu_co8470125.1_g000001
rosa_roxburghii Rroxscaffold_1G00015900
rosa_rugosa Rorug05G0371000
rosa_samantha Rh5AG428800 Rh5BG444100 Rh5CG466300 Rh5DG456200 Rh5DG456300
rosa_wichuraiana Rw5G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 278
AciI CCGC 2 cut(s) 88, 257
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 278
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 3 cut(s) 103, 236, 278
AflII CTTAAG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 3 cut(s) 85, 146, 184
AluI AGCT 3 cut(s) 85, 146, 184
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 2 cut(s) 9, 30
AlwNI CAGNNNCTG 1 cut(s) 85
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 85, 190
ApoI RAATTY 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 9
BauI CACGAG 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 2 cut(s) 72, 202
BccI CCATC 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 9, 30
BfaI CTAG 1 cut(s) 332
BfrI CTTAAG 1 cut(s) 161
BglII AGATCT 1 cut(s) 157
BisI GCNGC 2 cut(s) 86, 191
BlsI GCNGC 2 cut(s) 87, 192
BmcAI AGTACT 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 9
BmrI ACTGGG 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 119, 206
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 236, 278
Bse1I ACTGG 1 cut(s) 241
BseLI CCNNNNNNNGG 3 cut(s) 103, 236, 278
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 2 cut(s) 72, 202
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 35
BslFI GGGAC 2 cut(s) 183, 253
BslI CCNNNNNNNGG 3 cut(s) 103, 236, 278
BsmAI GTCTC 2 cut(s) 9, 30
BsmFI GGGAC 2 cut(s) 183, 253
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 2 cut(s) 88, 257
BspANI GGCC 1 cut(s) 10
BspTI CTTAAG 1 cut(s) 161
BsrI ACTGG 1 cut(s) 241
BssMI GATC 1 cut(s) 157
BssSI CACGAG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 329
BstAFI CTTAAG 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 13, 223
BstENI CCTNNNNNAGG 1 cut(s) 101
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 9, 30
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 190, 199
BstV1I GCAGC 2 cut(s) 72, 202
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 290
CviJI RGCY 4 cut(s) 10, 85, 146, 184
CviKI_1 RGCY 4 cut(s) 10, 85, 146, 184
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 2 cut(s) 13, 223
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DraIII CACNNNGTG 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 101
FaqI GGGAC 2 cut(s) 183, 253
FauI CCCGC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 86, 191
Fsp4HI GCNGC 2 cut(s) 86, 191
FspBI CTAG 1 cut(s) 332
GluI GCNGC 2 cut(s) 86, 191
HaeIII GGCC 1 cut(s) 10
HinfI GANTC 2 cut(s) 219, 267
Hpy188I TCNGA 2 cut(s) 37, 266
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 4 cut(s) 59, 67, 202, 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 199
HpyF3I CTNAG 2 cut(s) 13, 223
HpySE526I ACGT 1 cut(s) 48
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 3 cut(s) 65, 104, 222
Lsp1109I GCAGC 2 cut(s) 72, 202
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 2 cut(s) 283, 307
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 50, 316
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 2 cut(s) 62, 73
MnlI CCTC 4 cut(s) 263, 308, 332, 338
MseI TTAA 2 cut(s) 162, 233
MspCI CTTAAG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 190, 199
NdeII GATC 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PfeI GAWTC 2 cut(s) 219, 267
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 2 cut(s) 87, 192
PspPI GGNCC 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 162, 233
SatI GCNGC 2 cut(s) 86, 191
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 9
ScaI AGTACT 1 cut(s) 291
SduI GDGCHC 1 cut(s) 35
SetI ASST 7 cut(s) 51, 87, 99, 148, 186, 232, 277
SmlI CTYRAG 3 cut(s) 98, 161, 185
SmoI CTYRAG 3 cut(s) 98, 161, 185
Sse9I AATT 2 cut(s) 62, 73
SsiI CCGC 2 cut(s) 88, 257
SspMI CTAG 1 cut(s) 332
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 300
TasI AATT 2 cut(s) 62, 73
TatI WGTACW 1 cut(s) 289
TfiI GAWTC 2 cut(s) 219, 267
Tru1I TTAA 2 cut(s) 162, 233
Tru9I TTAA 2 cut(s) 162, 233
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 85, 190
Tsp45I GTSAC 1 cut(s) 307
Van91I CCANNNNNTGG 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 161
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 1 cut(s) 73
XspI CTAG 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.