Rh5DG456300

Zinc finger RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012599
Physical Location & Seq
Forward (+)
72663429 .. 72666447
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG456300.1

Sequence Viewer

Length: 777 bp
ATGTTGAATTTTGATCATGGGTTCTTTTTATTTATTTTTTATTTATTTGTGTATTGCAGATTTGAGATGTCTCGGCCCTTAGTTGAGATGTCTCGGTGCTCTGAAGAAATGGACGTTGCGATTGCAAAATTGCAACAAAATTTTCAGGAGCTGCGGAACAACCTTGAGAAGGCATTTTTAGAGCAGGGTAGAGCGTTATTGAGATTTGAAGCTCAATGGAAAGATCTTAAGACGGGATACACGAGAGAGCTTGAGCAGCGTGGTCTGCAACTGCAACAAAGGGGAATCTTAGCACCTTTAACTGGGACACAGCACTTCCCTCCCGCAAATCAGAATCCCACCTTGTGGAGTAACAGTACTACTCCTCGATGGAGTGACACCAATACCCCTCTTCCTCCTAGAGATAGCACAACGAAACTTTTTTGTGACATATGCAAAATTTTTTGCGACACTAAGATGGTACTTGATAAGCATAAAATGGGAAAGAAGCACCAGATGAACCTGGGGAAATTGAAAGGCAAAACTGTTACTGGACAAACGAGTAAGAAGAAGGCAGTTTATCCAACTGAAGACGATTTGCAGACTAAGAAACGGAGGGTTATTGAAGGTGGTGCAGCACCCCATACTTTAAGGACTTGTACTATATGTAACGTGGTCAGTATTAGTGCGACAGATTTCTATAAACATCTTGCTGGACAGCGACATAGAGATGCTGCTGCATTGATAAGTAATGGAGCTGGGACGAGTAGCTACAGCCAGCTGAGAATAAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

258

Amino Acids

29.52

Weight (kDa)

9.6

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012599)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36400 FvH4_3g36400 FvH4_3g36400
malus_domestica MD00G1013500.v1.1 MD03G1090800.v1.1
prunus_persica Prupe.6G075200_v2.0.a1
pyrus_communis pycom03g07270 pycom11g08730
rosa_chinensis RchiOBHm_Chr5g0065291
rosa_laevigata RLG00000035778
rosa_multiflora Rmu_co8470125.1_g000001
rosa_roxburghii Rroxscaffold_1G00015900
rosa_rugosa Rorug05G0371000
rosa_samantha Rh5AG428800 Rh5BG444100 Rh5CG466300 Rh5DG456200 Rh5DG456300
rosa_wichuraiana Rw5G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 345
AciI CCGC 2 cut(s) 154, 324
AcsI RAATTY 3 cut(s) 7, 139, 438
AcuI CTGAAG 2 cut(s) 123, 588
AdeI CACNNNGTG 1 cut(s) 345
AfaI GTAC 3 cut(s) 358, 462, 640
AfiI CCNNNNNNNGG 3 cut(s) 169, 302, 345
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 4 cut(s) 7, 209, 514, 605
AjnI CCWGG 1 cut(s) 501
AluBI AGCT 6 cut(s) 151, 212, 250, 737, 750, 760
AluI AGCT 6 cut(s) 151, 212, 250, 737, 750, 760
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 75, 96
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 5 cut(s) 151, 256, 614, 713, 716
ApoI RAATTY 3 cut(s) 7, 139, 438
AspS9I GGNCC 1 cut(s) 75
BauI CACGAG 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 576
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 5 cut(s) 138, 268, 626, 700, 703
BccI CCATC 2 cut(s) 363, 451
BciT130I CCWGG 1 cut(s) 503
BciVI GTATCC 1 cut(s) 230
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 75, 96
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 751
BfrI CTTAAG 1 cut(s) 227
BfuI GTATCC 1 cut(s) 230
BglII AGATCT 1 cut(s) 223
BisI GCNGC 5 cut(s) 152, 257, 615, 714, 717
BlsI GCNGC 5 cut(s) 153, 258, 616, 715, 718
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 503
BmrI ACTGGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 700
BmuI ACTGGG 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 576
BpuEI CTTGAG 2 cut(s) 185, 272
BsaJI CCNNGG 1 cut(s) 502
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 302, 345
Bse1I ACTGG 2 cut(s) 307, 535
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 502
BseLI CCNNNNNNNGG 3 cut(s) 169, 302, 345
BseMII CTCAG 1 cut(s) 752
BseNI ACTGG 2 cut(s) 307, 535
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 5 cut(s) 138, 268, 626, 700, 703
BseYI CCCAGC 1 cut(s) 737
BsgI GTGCAG 1 cut(s) 633
BshFI GGCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 101
BslFI GGGAC 2 cut(s) 319, 754
BslI CCNNNNNNNGG 3 cut(s) 169, 302, 345
BsmAI GTCTC 2 cut(s) 75, 96
BsmFI GGGAC 2 cut(s) 319, 754
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 13, 223
BspACI CCGC 2 cut(s) 154, 324
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 753
BspTI CTTAAG 1 cut(s) 227
BsrI ACTGG 2 cut(s) 307, 535
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 2 cut(s) 13, 223
BssSI CACGAG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 2 cut(s) 356, 526
Bst6I CTCTTC 1 cut(s) 396
BstAFI CTTAAG 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 758
BstDEI CTNAG 5 cut(s) 79, 289, 453, 585, 761
BstENI CCTNNNNNAGG 1 cut(s) 167
BstKTI GATC 2 cut(s) 16, 226
BstMAI GTCTC 2 cut(s) 75, 96
BstMBI GATC 2 cut(s) 13, 223
BstMWI GCNNNNNNNGC 2 cut(s) 256, 265
BstNI CCWGG 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 501
BstSFI CTRYAG 1 cut(s) 751
BstV1I GCAGC 5 cut(s) 138, 268, 626, 700, 703
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuI GTATCC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 758
CaiI CAGNNNCTG 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 75
Csp6I GTAC 3 cut(s) 357, 461, 639
CviAII CATG 1 cut(s) 17
CviJI RGCY 8 cut(s) 76, 151, 212, 250, 737, 750, 756, 760
CviKI_1 RGCY 8 cut(s) 76, 151, 212, 250, 737, 750, 756, 760
CviQI GTAC 3 cut(s) 357, 461, 639
DdeI CTNAG 5 cut(s) 79, 289, 453, 585, 761
DpnI GATC 2 cut(s) 15, 225
DpnII GATC 2 cut(s) 13, 223
DraIII CACNNNGTG 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco57I CTGAAG 2 cut(s) 123, 588
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 501
FaeI CATG 1 cut(s) 20
FaiI YATR 9 cut(s) 18, 431, 433, 474, 624, 644, 646, 681, 705
FaqI GGGAC 2 cut(s) 319, 754
FatI CATG 1 cut(s) 16
FauI CCCGC 1 cut(s) 331
FauNDI CATATG 1 cut(s) 431
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 5 cut(s) 152, 257, 615, 714, 717
Fsp4HI GCNGC 5 cut(s) 152, 257, 615, 714, 717
FspBI CTAG 1 cut(s) 399
GluI GCNGC 5 cut(s) 152, 257, 615, 714, 717
GsaI CCCAGC 1 cut(s) 741
HaeIII GGCC 1 cut(s) 76
Hin1II CATG 1 cut(s) 20
HinfI GANTC 2 cut(s) 285, 334
Hpy188I TCNGA 2 cut(s) 103, 333
Hpy188III TCNNGA 1 cut(s) 146
HpyAV CCTTC 3 cut(s) 163, 544, 599
HpyCH4III ACNGT 2 cut(s) 356, 526
HpyCH4IV ACGT 2 cut(s) 114, 651
HpyCH4V TGCA 9 cut(s) 57, 125, 133, 268, 274, 435, 580, 614, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 265
HpyF3I CTNAG 5 cut(s) 79, 289, 453, 585, 761
HpySE526I ACGT 2 cut(s) 114, 651
Hsp92II CATG 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 2 cut(s) 13, 223
LmnI GCTCC 2 cut(s) 148, 734
Lsp1109I GCAGC 5 cut(s) 138, 268, 626, 700, 703
LweI GCATC 1 cut(s) 700
MaeI CTAG 1 cut(s) 399
MaeII ACGT 2 cut(s) 114, 651
MaeIII GTNAC 5 cut(s) 350, 374, 425, 526, 647
MalI GATC 2 cut(s) 15, 225
MboI GATC 2 cut(s) 13, 223
MboII GAAGA 4 cut(s) 116, 383, 559, 581
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 6 cut(s) 7, 128, 139, 438, 509, 772
MmeI TCCRAC 1 cut(s) 587
MnlI CCTC 5 cut(s) 330, 375, 399, 405, 588
MseI TTAA 3 cut(s) 228, 299, 629
MslI CAYNNNNRTG 2 cut(s) 455, 708
MspA1I CMGCKG 1 cut(s) 760
MspCI CTTAAG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 2 cut(s) 256, 265
NdeI CATATG 1 cut(s) 431
NdeII GATC 2 cut(s) 13, 223
NlaIII CATG 1 cut(s) 20
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 2 cut(s) 374, 425
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PfeI GAWTC 2 cut(s) 285, 334
PflMI CCANNNNNTGG 1 cut(s) 345
PkrI GCNGC 5 cut(s) 153, 258, 616, 715, 718
Psp6I CCWGG 1 cut(s) 501
PspFI CCCAGC 1 cut(s) 737
PspGI CCWGG 1 cut(s) 501
PspPI GGNCC 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 760
RsaI GTAC 3 cut(s) 358, 462, 640
RsaNI GTAC 3 cut(s) 357, 461, 639
RseI CAYNNNNRTG 2 cut(s) 455, 708
SaqAI TTAA 3 cut(s) 228, 299, 629
SatI GCNGC 5 cut(s) 152, 257, 615, 714, 717
Sau3AI GATC 2 cut(s) 13, 223
Sau96I GGNCC 1 cut(s) 75
ScaI AGTACT 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 503
SduI GDGCHC 1 cut(s) 101
SfaNI GCATC 1 cut(s) 700
SfcI CTRYAG 1 cut(s) 751
SmiMI CAYNNNNRTG 2 cut(s) 455, 708
SmlI CTYRAG 3 cut(s) 164, 227, 251
SmoI CTYRAG 3 cut(s) 164, 227, 251
Sse9I AATT 6 cut(s) 7, 128, 139, 438, 509, 772
SsiI CCGC 2 cut(s) 154, 324
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 501
TaaI ACNGT 2 cut(s) 356, 526
TaiI ACGT 2 cut(s) 117, 654
TaqI TCGA 1 cut(s) 367
TasI AATT 6 cut(s) 7, 128, 139, 438, 509, 772
TatI WGTACW 2 cut(s) 356, 638
TfiI GAWTC 2 cut(s) 285, 334
Tru1I TTAA 3 cut(s) 228, 299, 629
Tru9I TTAA 3 cut(s) 228, 299, 629
TseFI GTSAC 2 cut(s) 374, 425
TseI GCWGC 5 cut(s) 151, 256, 614, 713, 716
Tsp45I GTSAC 2 cut(s) 374, 425
TspDTI ATGAA 1 cut(s) 512
TspGWI ACGGA 1 cut(s) 607
Van91I CCANNNNNTGG 1 cut(s) 345
Vha464I CTTAAG 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 3 cut(s) 7, 139, 438
XspI CTAG 1 cut(s) 399
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.