RchiOBHm_Chr5g0065291

Zinc finger RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012599
Physical Location & Seq
Forward (+)
71158860 .. 71162484
3625 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34118

Sequence Viewer

Length: 711 bp
ATGTCTCGGCCCTTAGTTGAGATGTCTCGGTGCTCTGAAGAAATGGACGTTGCGATTGCAAAGTTGCAACAAAATTTTCAGGAGCTGCGGAACAACCTTGAGAAGGCATTTTTAGAGCAGGGTCGAGCGTTATTGAGATTTGAAGCTCAATGGAAAGATCTTAAGACGGGACACACGAGAGAGCTTGAGCAGCGTGGTCTGCAACTGCAACAAAGGGGAATCTTAGTACCTTTAACTGGGACACAGCACTTCCCTCCTGCAAATCAGAATCCCACCTTGTGGAGTAACAGTACTACTCCTCGATGGAGTGACACCAATACCCCTCTTCCTCCTAGAGATAGCACAACAAAACTTTTTTGTGACATATGCAAAATTTTTTGCGACACTAAGATGGTACTTGATAAGCATAAAATGGGAAAGAAGCACCAGATGAACCTGGGGAAATTGAAAGGCAAAACTGTTACTGGACAAACGAGTAAGAAGAAGGCAGTTTATCCAACTGAAGACGATTTGCAGACTAAGAAACGGAGGGTTATTGAAGGTGGTGCAGCACCCCATACTTTAAGGACTTGTACTATATGTAACGTGGTCAGTATTAGTGCGACAGATTTCTATAAACATCTTGCTGGACAGCGACATAGAGATGCTGCTGCATTGATAAGTAATGGAGCTGGGACGAGTAGCTACAGCCAGCTGAGAATAAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

236

Amino Acids

26.68

Weight (kDa)

9.79

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012599)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36400 FvH4_3g36400 FvH4_3g36400
malus_domestica MD00G1013500.v1.1 MD03G1090800.v1.1
prunus_persica Prupe.6G075200_v2.0.a1
pyrus_communis pycom03g07270 pycom11g08730
rosa_chinensis RchiOBHm_Chr5g0065291
rosa_laevigata RLG00000035778
rosa_multiflora Rmu_co8470125.1_g000001
rosa_roxburghii Rroxscaffold_1G00015900
rosa_rugosa Rorug05G0371000
rosa_samantha Rh5AG428800 Rh5BG444100 Rh5CG466300 Rh5DG456200 Rh5DG456300
rosa_wichuraiana Rw5G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 279
AciI CCGC 1 cut(s) 88
AcsI RAATTY 2 cut(s) 73, 372
AcuI CTGAAG 2 cut(s) 57, 522
AdeI CACNNNGTG 1 cut(s) 279
AfaI GTAC 4 cut(s) 228, 292, 396, 574
AfiI CCNNNNNNNGG 3 cut(s) 103, 236, 279
AflII CTTAAG 1 cut(s) 161
AgsI TTSAA 3 cut(s) 143, 448, 539
AjnI CCWGG 1 cut(s) 435
AluBI AGCT 6 cut(s) 85, 146, 184, 671, 684, 694
AluI AGCT 6 cut(s) 85, 146, 184, 671, 684, 694
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 2 cut(s) 9, 30
AlwNI CAGNNNCTG 1 cut(s) 85
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 5 cut(s) 85, 190, 548, 647, 650
ApoI RAATTY 2 cut(s) 73, 372
AspS9I GGNCC 1 cut(s) 9
BauI CACGAG 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 5 cut(s) 72, 202, 560, 634, 637
BccI CCATC 2 cut(s) 297, 385
BciT130I CCWGG 1 cut(s) 437
BcoDI GTCTC 2 cut(s) 9, 30
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 685
BfrI CTTAAG 1 cut(s) 161
BglII AGATCT 1 cut(s) 157
BisI GCNGC 5 cut(s) 86, 191, 549, 648, 651
BlsI GCNGC 5 cut(s) 87, 192, 550, 649, 652
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 437
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 634
BmuI ACTGGG 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 119, 206
BsaJI CCNNGG 1 cut(s) 436
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 236, 279
Bse1I ACTGG 2 cut(s) 241, 469
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 436
BseLI CCNNNNNNNGG 3 cut(s) 103, 236, 279
BseMII CTCAG 1 cut(s) 686
BseNI ACTGG 2 cut(s) 241, 469
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 5 cut(s) 72, 202, 560, 634, 637
BseYI CCCAGC 1 cut(s) 671
BsgI GTGCAG 1 cut(s) 567
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 35
BslFI GGGAC 3 cut(s) 183, 253, 688
BslI CCNNNNNNNGG 3 cut(s) 103, 236, 279
BsmAI GTCTC 2 cut(s) 9, 30
BsmFI GGGAC 3 cut(s) 183, 253, 688
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 88
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 687
BspTI CTTAAG 1 cut(s) 161
BsrI ACTGG 2 cut(s) 241, 469
BssECI CCNNGG 1 cut(s) 436
BssMI GATC 1 cut(s) 157
BssSI CACGAG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 2 cut(s) 290, 460
Bst6I CTCTTC 1 cut(s) 330
BstAFI CTTAAG 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 692
BstDEI CTNAG 5 cut(s) 13, 223, 387, 519, 695
BstENI CCTNNNNNAGG 1 cut(s) 101
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 9, 30
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 190, 199
BstNI CCWGG 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 435
BstSFI CTRYAG 1 cut(s) 685
BstV1I GCAGC 5 cut(s) 72, 202, 560, 634, 637
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 692
CaiI CAGNNNCTG 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 4 cut(s) 227, 291, 395, 573
CviJI RGCY 8 cut(s) 10, 85, 146, 184, 671, 684, 690, 694
CviKI_1 RGCY 8 cut(s) 10, 85, 146, 184, 671, 684, 690, 694
CviQI GTAC 4 cut(s) 227, 291, 395, 573
DdeI CTNAG 5 cut(s) 13, 223, 387, 519, 695
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DraIII CACNNNGTG 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco57I CTGAAG 2 cut(s) 57, 522
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 435
FaiI YATR 8 cut(s) 365, 367, 408, 558, 578, 580, 615, 639
FaqI GGGAC 3 cut(s) 183, 253, 688
FauNDI CATATG 1 cut(s) 365
Fnu4HI GCNGC 5 cut(s) 86, 191, 549, 648, 651
Fsp4HI GCNGC 5 cut(s) 86, 191, 549, 648, 651
FspBI CTAG 1 cut(s) 333
GluI GCNGC 5 cut(s) 86, 191, 549, 648, 651
GsaI CCCAGC 1 cut(s) 675
HaeIII GGCC 1 cut(s) 10
HinfI GANTC 2 cut(s) 219, 268
Hpy188I TCNGA 2 cut(s) 37, 267
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 97, 478, 533
HpyCH4III ACNGT 2 cut(s) 290, 460
HpyCH4IV ACGT 2 cut(s) 48, 585
HpyCH4V TGCA 9 cut(s) 59, 67, 202, 208, 260, 369, 514, 548, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 199
HpyF3I CTNAG 5 cut(s) 13, 223, 387, 519, 695
HpySE526I ACGT 2 cut(s) 48, 585
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 2 cut(s) 82, 668
Lsp1109I GCAGC 5 cut(s) 72, 202, 560, 634, 637
LweI GCATC 1 cut(s) 634
MaeI CTAG 1 cut(s) 333
MaeII ACGT 2 cut(s) 48, 585
MaeIII GTNAC 5 cut(s) 284, 308, 359, 460, 581
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 4 cut(s) 50, 317, 493, 515
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 4 cut(s) 73, 372, 443, 706
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 5 cut(s) 264, 309, 333, 339, 522
MseI TTAA 3 cut(s) 162, 233, 563
MslI CAYNNNNRTG 2 cut(s) 389, 642
MspA1I CMGCKG 1 cut(s) 694
MspCI CTTAAG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 437
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 2 cut(s) 190, 199
NdeI CATATG 1 cut(s) 365
NdeII GATC 1 cut(s) 157
NmuCI GTSAC 2 cut(s) 308, 359
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PfeI GAWTC 2 cut(s) 219, 268
PflMI CCANNNNNTGG 1 cut(s) 279
PkrI GCNGC 5 cut(s) 87, 192, 550, 649, 652
Psp6I CCWGG 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 1 cut(s) 435
PspPI GGNCC 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 694
RsaI GTAC 4 cut(s) 228, 292, 396, 574
RsaNI GTAC 4 cut(s) 227, 291, 395, 573
RseI CAYNNNNRTG 2 cut(s) 389, 642
SaqAI TTAA 3 cut(s) 162, 233, 563
SatI GCNGC 5 cut(s) 86, 191, 549, 648, 651
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 9
ScaI AGTACT 1 cut(s) 292
ScrFI CCNGG 1 cut(s) 437
SduI GDGCHC 1 cut(s) 35
SfaNI GCATC 1 cut(s) 634
SfcI CTRYAG 1 cut(s) 685
SmiMI CAYNNNNRTG 2 cut(s) 389, 642
SmlI CTYRAG 3 cut(s) 98, 161, 185
SmoI CTYRAG 3 cut(s) 98, 161, 185
Sse9I AATT 4 cut(s) 73, 372, 443, 706
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 435
TaaI ACNGT 2 cut(s) 290, 460
TaiI ACGT 2 cut(s) 51, 588
TaqI TCGA 2 cut(s) 124, 301
TasI AATT 4 cut(s) 73, 372, 443, 706
TatI WGTACW 2 cut(s) 290, 572
TfiI GAWTC 2 cut(s) 219, 268
Tru1I TTAA 3 cut(s) 162, 233, 563
Tru9I TTAA 3 cut(s) 162, 233, 563
TseFI GTSAC 2 cut(s) 308, 359
TseI GCWGC 5 cut(s) 85, 190, 548, 647, 650
Tsp45I GTSAC 2 cut(s) 308, 359
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 279
Vha464I CTTAAG 1 cut(s) 161
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 2 cut(s) 73, 372
XspI CTAG 1 cut(s) 333
ZrmI AGTACT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.