MD03G1090800.v1.1

Zinc finger RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0012599
Physical Location & Seq
Reverse (-)
7517666 .. 7521697
4032 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1090800.v1.1.491

Sequence Viewer

Length: 663 bp
ATGCAATTGGAATTGAGGTACCACCTTGAGAAGTCGTTCTTAGAGCAGGGCAGGGCCCTGTTGAAATTTGAAGCTCAGTGGAAAGATCTTAAGAAAGATCACAGCAGAGAAAATGAGCAGCGGCAGGTTCACCTGCAACAAATGGGTTTCTCAATACCATCAAATGGGACAGAGCACTATGCTTCTGCAAATCCGAATGCTGCCTCGTGGAGTAACACTAGTGCTCGGCCGGCTGGAAATGCTACTCCTCGTCCTTCTGGAAACGGTACTCCGAAACTGCATTGTGAGATATGCAATATTTATTGCGACACCAAGGATGTACTCAACAAGCATAAACAGGGAAAAAAGCACAAGATGAATTTGGATAAGTTGAAGGGCAAAAAGATCCCTGGAGAAAACAGTAAGAGGAGAGCAGCTGATCAACCTCCGGAGGATTTAGAAACTAAGAGAAGGAAGGTTCTTGAAAGCGGGGCAGCACCAGACGCTTTAAGGACTTGCGCTTTATGTAATGTGGTCTGTCTTACTGAGACGGATTTCAATAATCATCGCTCCGGACAACGGCATGTTGAGGCCGCTACTGCGGCGAGGAGGCATGGTGCTGGTACAAGTGGAGCAAGCAGCCACTGGCAGTCGCAGTGGAGATATCAGGATTGGAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

221

Amino Acids

24.81

Weight (kDa)

9.49

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 93 - 117 1e-05 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012599)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36400 FvH4_3g36400 FvH4_3g36400
malus_domestica MD00G1013500.v1.1 MD03G1090800.v1.1
prunus_persica Prupe.6G075200_v2.0.a1
pyrus_communis pycom03g07270 pycom11g08730
rosa_chinensis RchiOBHm_Chr5g0065291
rosa_laevigata RLG00000035778
rosa_multiflora Rmu_co8470125.1_g000001
rosa_roxburghii Rroxscaffold_1G00015900
rosa_rugosa Rorug05G0371000
rosa_samantha Rh5AG428800 Rh5BG444100 Rh5CG466300 Rh5DG456200 Rh5DG456300
rosa_wichuraiana Rw5G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 141
Acc36I ACCTGC 2 cut(s) 115, 141
Acc65I GGTACC 1 cut(s) 18
AccB1I GGYRCC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 164
AccIII TCCGGA 2 cut(s) 427, 551
AciI CCGC 4 cut(s) 121, 468, 573, 581
AclWI GGATC 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 3 cut(s) 65, 358, 655
AfaI GTAC 4 cut(s) 20, 268, 321, 604
AfiI CCNNNNNNNGG 2 cut(s) 164, 558
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 5 cut(s) 64, 71, 373, 464, 538
AhlI ACTAGT 1 cut(s) 218
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 2 cut(s) 74, 416
AluI AGCT 2 cut(s) 74, 416
Alw21I GWGCWC 2 cut(s) 177, 226
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 1 cut(s) 379
AlwNI CAGNNNCTG 1 cut(s) 624
Aor13HI TCCGGA 2 cut(s) 427, 551
AoxI GGCC 3 cut(s) 54, 227, 570
ApaI GGGCCC 1 cut(s) 58
ApeKI GCWGC 5 cut(s) 118, 200, 413, 473, 618
ApoI RAATTY 3 cut(s) 65, 358, 655
Asp700I GAANNNNTTC 1 cut(s) 35
Asp718I GGTACC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 2 cut(s) 54, 55
AsuHPI GGTGA 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 18
BanII GRGCYC 1 cut(s) 58
BauI CACGAG 1 cut(s) 205
Bbv12I GWGCWC 2 cut(s) 177, 226
BbvI GCAGC 5 cut(s) 130, 187, 425, 485, 630
BccI CCATC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 575
BciT130I CCWGG 1 cut(s) 390
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 521
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 89
BfuAI ACCTGC 2 cut(s) 115, 141
BglII AGATCT 1 cut(s) 85
BisI GCNGC 8 cut(s) 119, 122, 201, 414, 474, 573, 582, 619
BlsI GCNGC 8 cut(s) 120, 123, 202, 415, 475, 574, 583, 620
Bme1390I CCNGG 1 cut(s) 390
BmgT120I GGNCC 2 cut(s) 54, 55
BmiI GGNNCC 2 cut(s) 20, 56
BmrFI CCNGG 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 312, 388
BsaWI WCCGGW 2 cut(s) 427, 551
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 558
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 629
BseAI TCCGGA 2 cut(s) 427, 551
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 312, 388
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 164, 558
BseMII CTCAG 2 cut(s) 89, 516
BseNI ACTGG 1 cut(s) 629
BseRI GAGGAG 3 cut(s) 237, 421, 601
BseSI GKGCMC 1 cut(s) 58
BseX3I CGGCCG 1 cut(s) 227
BseXI GCAGC 5 cut(s) 130, 187, 425, 485, 630
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 3 cut(s) 56, 229, 572
BshNI GGYRCC 1 cut(s) 18
BsiEI CGRYCG 1 cut(s) 230
BsiHKAI GWGCWC 2 cut(s) 177, 226
BsiSI CCGG 3 cut(s) 230, 428, 552
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 164, 558
BsmAI GTCTC 1 cut(s) 521
BsmBI CGTCTC 1 cut(s) 521
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 3 cut(s) 56, 229, 572
Bsp120I GGGCCC 1 cut(s) 54
Bsp1286I GDGCHC 3 cut(s) 58, 177, 226
Bsp13I TCCGGA 2 cut(s) 427, 551
Bsp143I GATC 4 cut(s) 85, 97, 384, 418
BspACI CCGC 4 cut(s) 121, 468, 573, 581
BspANI GGCC 3 cut(s) 56, 229, 572
BspCNI CTCAG 2 cut(s) 88, 517
BspEI TCCGGA 2 cut(s) 427, 551
BspLI GGNNCC 2 cut(s) 20, 56
BspMI ACCTGC 2 cut(s) 115, 141
BspPI GGATC 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 18
BspTI CTTAAG 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 1 cut(s) 629
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 312, 388
BssMI GATC 4 cut(s) 85, 97, 384, 418
BssSI CACGAG 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 2 cut(s) 266, 401
BstAFI CTTAAG 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 231, 616
BstDEI CTNAG 4 cut(s) 40, 75, 444, 525
BstF5I GGATG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 4 cut(s) 88, 100, 387, 421
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 4 cut(s) 85, 97, 384, 418
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 5 cut(s) 230, 239, 482, 578, 581
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 388
BstSLI GKGCMC 1 cut(s) 58
BstV1I GCAGC 5 cut(s) 130, 187, 425, 485, 630
BstX2I RGATCY 2 cut(s) 85, 384
BstYI RGATCY 2 cut(s) 85, 384
BstZI CGGCCG 1 cut(s) 227
BsuRI GGCC 3 cut(s) 56, 229, 572
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 641
BtsIMutI CAGTG 3 cut(s) 83, 622, 641
BveI ACCTGC 2 cut(s) 115, 141
Cac8I GCNNGC 2 cut(s) 231, 616
CaiI CAGNNNCTG 1 cut(s) 624
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 54, 55
CseI GACGC 1 cut(s) 491
Csp6I GTAC 4 cut(s) 19, 267, 320, 603
CviAII CATG 2 cut(s) 563, 593
CviJI RGCY 7 cut(s) 56, 74, 229, 233, 416, 572, 621
CviKI_1 RGCY 7 cut(s) 56, 74, 229, 233, 416, 572, 621
CviQI GTAC 4 cut(s) 19, 267, 320, 603
DdeI CTNAG 4 cut(s) 40, 75, 444, 525
DpnI GATC 4 cut(s) 87, 99, 386, 420
DpnII GATC 4 cut(s) 85, 97, 384, 418
EaeI YGGCCR 1 cut(s) 227
EagI CGGCCG 1 cut(s) 227
EclXI CGGCCG 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 644
Eco52I CGGCCG 1 cut(s) 227
EcoO109I RGGNCCY 2 cut(s) 54, 55
EcoRI GAATTC 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 388
EcoRV GATATC 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 521
FaeI CATG 2 cut(s) 566, 596
FaiI YATR 7 cut(s) 180, 292, 333, 505, 564, 594, 661
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 1 cut(s) 181
FatI CATG 2 cut(s) 562, 592
FauI CCCGC 1 cut(s) 461
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 8 cut(s) 119, 122, 201, 414, 474, 573, 582, 619
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 8 cut(s) 119, 122, 201, 414, 474, 573, 582, 619
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 499
GluI GCNGC 8 cut(s) 119, 122, 201, 414, 474, 573, 582, 619
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 3 cut(s) 56, 229, 572
HapII CCGG 3 cut(s) 230, 428, 552
HgaI GACGC 1 cut(s) 491
HhaI GCGC 1 cut(s) 500
Hin1II CATG 2 cut(s) 566, 596
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HpaII CCGG 3 cut(s) 230, 428, 552
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 195, 273
Hpy188III TCNNGA 5 cut(s) 258, 428, 461, 552, 647
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 4 cut(s) 264, 367, 444, 448
HpyCH4III ACNGT 2 cut(s) 266, 401
HpyCH4V TGCA 5 cut(s) 4, 136, 188, 280, 294
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 239, 482, 578, 581
HpyF3I CTNAG 4 cut(s) 40, 75, 444, 525
Hsp92II CATG 2 cut(s) 566, 596
HspAI GCGC 1 cut(s) 498
Kpn2I TCCGGA 2 cut(s) 427, 551
KpnI GGTACC 1 cut(s) 22
KroI GCCGGC 1 cut(s) 229
KroNI GCCGGC 1 cut(s) 231
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 4 cut(s) 85, 97, 384, 418
LmnI GCTCC 2 cut(s) 554, 611
Lsp1109I GCAGC 5 cut(s) 130, 187, 425, 485, 630
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 212
MalI GATC 4 cut(s) 87, 99, 386, 420
MboI GATC 4 cut(s) 85, 97, 384, 418
MfeI CAATTG 1 cut(s) 5
MflI RGATCY 2 cut(s) 85, 384
MhlI GDGCHC 3 cut(s) 58, 177, 226
MluCI AATT 5 cut(s) 5, 11, 65, 358, 655
MnlI CCTC 9 cut(s) 9, 214, 258, 399, 424, 435, 562, 579, 582
MroI TCCGGA 2 cut(s) 427, 551
MroNI GCCGGC 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 2 cut(s) 90, 488
MspA1I CMGCKG 2 cut(s) 121, 416
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 3 cut(s) 230, 428, 552
MspR9I CCNGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 5 cut(s) 230, 239, 482, 578, 581
NaeI GCCGGC 1 cut(s) 231
NdeII GATC 4 cut(s) 85, 97, 384, 418
NgoMIV GCCGGC 1 cut(s) 229
NlaIII CATG 2 cut(s) 566, 596
NlaIV GGNNCC 2 cut(s) 20, 56
NmeAIII GCCGAG 1 cut(s) 205
NspI RCATGY 1 cut(s) 566
PaqCI CACCTGC 1 cut(s) 141
PctI GAATGC 1 cut(s) 202
PdiI GCCGGC 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 8 cut(s) 120, 123, 202, 415, 475, 574, 583, 620
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 2 cut(s) 20, 56
PspOMI GGGCCC 1 cut(s) 54
PspPI GGNCC 2 cut(s) 54, 55
PstNI CAGNNNCTG 1 cut(s) 624
PsuI RGATCY 2 cut(s) 85, 384
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 4 cut(s) 20, 268, 321, 604
RsaNI GTAC 4 cut(s) 19, 267, 320, 603
SaqAI TTAA 2 cut(s) 90, 488
SatI GCNGC 8 cut(s) 119, 122, 201, 414, 474, 573, 582, 619
Sau3AI GATC 4 cut(s) 85, 97, 384, 418
Sau96I GGNCC 2 cut(s) 54, 55
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 3 cut(s) 58, 177, 226
SetI ASST 8 cut(s) 20, 27, 76, 129, 135, 418, 427, 459
SmlI CTYRAG 2 cut(s) 26, 89
SmoI CTYRAG 2 cut(s) 26, 89
SpeI ACTAGT 1 cut(s) 218
Sse9I AATT 5 cut(s) 5, 11, 65, 358, 655
SsiI CCGC 4 cut(s) 121, 468, 573, 581
SspI AATATT 1 cut(s) 298
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 266, 401
TasI AATT 5 cut(s) 5, 11, 65, 358, 655
TatI WGTACW 1 cut(s) 319
TauI GCSGC 3 cut(s) 124, 575, 584
Tru1I TTAA 2 cut(s) 90, 488
Tru9I TTAA 2 cut(s) 90, 488
TscAI CASTG 3 cut(s) 83, 629, 641
TseI GCWGC 5 cut(s) 118, 200, 413, 473, 618
TspDTI ATGAA 2 cut(s) 371, 648
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 3 cut(s) 83, 629, 641
Van91I CCANNNNNTGG 1 cut(s) 164
Vha464I CTTAAG 1 cut(s) 89
XapI RAATTY 3 cut(s) 65, 358, 655
XceI RCATGY 1 cut(s) 566
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.