Rorug05G0371000

Zinc finger RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012599
Physical Location & Seq
Forward (+)
49946288 .. 49950552
4265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0371000.1

Sequence Viewer

Length: 696 bp
ATGGGTACACAAACTGGAAATCTGAGTCAAACCAGTAGCTCAAGCCCTTCTATTAGTTCTGCCATGCATATAGAGTCTACTGCAGCTTTAGGGCAGTCCCCTTTAGGACCACCCACTCAAACACTCCCACCTTCAGCTTTAGGTTCAGGTTCTGGTGTTGAATCTGAACCTGGCAGTGACAACATACAACCCCCTGCTGTAATTGGGCAGAAAAGAAAAGAACCTGCTAACAAAAGTCCTCTTTGGGCACATTTTACTAGATGTAAACTCCCGAACTCAGACCAAATAGATACATGTTGGTGCACTTGTAACTATTGTAATGAGAAAGTCTTGTGTGATACAAGCTATGAAACGATTAACTCAATACAAGGGGACTTGAAGAAAATATTGTTGAACATGTATGATGAATATAAGGGCAGCGAAGGCAGCAACCAAACTGAACAAAGCATGGTAGAATATTTTGGATTGGATGGGGATGACTTGGAGAACCTTGATGAAGTGAGCAGGCAAATAGCAAGGGAGAGGATGGCTGAGCAATCCCAATGCATAAGAAATGAAGTTGATCAATATTTATCGGATAGACGCCCCATAAATCTCTCTCCCTCTGACGCCGCCTCATCTAGCCTTTCATCACGATTTTGGGTTGGAAATCGAAGCCTCGCTCAAGCAAGGCTGCTTGGCGATTTGATTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

231

Amino Acids

25.19

Weight (kDa)

4.69

Isoelectric Point (pI)

64.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012599)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36400 FvH4_3g36400 FvH4_3g36400
malus_domestica MD00G1013500.v1.1 MD03G1090800.v1.1
prunus_persica Prupe.6G075200_v2.0.a1
pyrus_communis pycom03g07270 pycom11g08730
rosa_chinensis RchiOBHm_Chr5g0065291
rosa_laevigata RLG00000035778
rosa_multiflora Rmu_co8470125.1_g000001
rosa_roxburghii Rroxscaffold_1G00015900
rosa_rugosa Rorug05G0371000
rosa_samantha Rh5AG428800 Rh5BG444100 Rh5CG466300 Rh5DG456200 Rh5DG456300
rosa_wichuraiana Rw5G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 232
AccI GTMKAC 1 cut(s) 77
AciI CCGC 1 cut(s) 612
AcuI CTGAAG 1 cut(s) 117
AcyI GRCGYC 2 cut(s) 583, 609
AfaI GTAC 1 cut(s) 7
AflIII ACRYGT 2 cut(s) 293, 396
AgsI TTSAA 3 cut(s) 161, 379, 394
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 4 cut(s) 39, 86, 137, 345
AluI AGCT 4 cut(s) 39, 86, 137, 345
Alw21I GWGCWC 1 cut(s) 305
Alw44I GTGCAC 1 cut(s) 301
AlwNI CAGNNNCTG 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 301
ApeKI GCWGC 4 cut(s) 83, 417, 426, 673
AspS9I GGNCC 1 cut(s) 107
AvaII GGWCC 1 cut(s) 107
BaeGI GKGCMC 2 cut(s) 250, 305
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 4 cut(s) 95, 429, 438, 660
BccI CCATC 2 cut(s) 464, 520
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 1 cut(s) 562
BfaI CTAG 2 cut(s) 258, 621
BfmI CTRYAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 5 cut(s) 84, 418, 427, 612, 674
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 5 cut(s) 85, 419, 428, 613, 675
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 171
Bpu1102I GCTNAGC 1 cut(s) 531
BpuEI CTTGAG 2 cut(s) 25, 648
BsaHI GRCGYC 2 cut(s) 583, 609
Bse1I ACTGG 2 cut(s) 19, 33
BseBI CCWGG 1 cut(s) 171
BseGI GGATG 3 cut(s) 475, 481, 531
BseMII CTCAG 3 cut(s) 14, 291, 522
BseNI ACTGG 2 cut(s) 19, 33
BseSI GKGCMC 2 cut(s) 250, 305
BseXI GCAGC 4 cut(s) 95, 429, 438, 660
BsiHKAI GWGCWC 1 cut(s) 305
BslFI GGGAC 2 cut(s) 82, 386
BsmFI GGGAC 2 cut(s) 82, 386
Bsp1286I GDGCHC 2 cut(s) 250, 305
Bsp143I GATC 1 cut(s) 562
Bsp1720I GCTNAGC 1 cut(s) 531
BspACI CCGC 1 cut(s) 612
BspCNI CTCAG 3 cut(s) 15, 290, 523
BspMAI CTGCAG 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 232
BsrI ACTGG 2 cut(s) 19, 33
BssMI GATC 1 cut(s) 562
BssNI GRCGYC 2 cut(s) 583, 609
Bst2UI CCWGG 1 cut(s) 171
BstACI GRCGYC 2 cut(s) 583, 609
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 3 cut(s) 23, 277, 531
BstF5I GGATG 3 cut(s) 475, 481, 531
BstKTI GATC 1 cut(s) 565
BstMBI GATC 1 cut(s) 562
BstMWI GCNNNNNNNGC 2 cut(s) 423, 426
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 2 cut(s) 297, 400
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 2 cut(s) 250, 305
BstV1I GCAGC 4 cut(s) 95, 429, 438, 660
BtsCI GGATG 3 cut(s) 475, 481, 531
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 181
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 506
CaiI CAGNNNCTG 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 2 cut(s) 591, 617
Csp6I GTAC 1 cut(s) 6
CviAII CATG 4 cut(s) 64, 294, 397, 448
CviJI RGCY 9 cut(s) 39, 45, 86, 137, 345, 530, 624, 657, 673
CviKI_1 RGCY 9 cut(s) 39, 45, 86, 137, 345, 530, 624, 657, 673
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 3 cut(s) 23, 277, 531
DpnI GATC 1 cut(s) 564
DpnII GATC 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 169
EcoT22I ATGCAT 2 cut(s) 69, 548
FaeI CATG 4 cut(s) 67, 297, 400, 451
FaqI GGGAC 2 cut(s) 82, 386
FatI CATG 4 cut(s) 63, 293, 396, 447
FbaI TGATCA 1 cut(s) 562
FblI GTMKAC 1 cut(s) 77
Fnu4HI GCNGC 5 cut(s) 84, 418, 427, 612, 674
FokI GGATG 3 cut(s) 482, 488, 538
Fsp4HI GCNGC 5 cut(s) 84, 418, 427, 612, 674
FspBI CTAG 2 cut(s) 258, 621
GluI GCNGC 5 cut(s) 84, 418, 427, 612, 674
HgaI GACGC 2 cut(s) 591, 617
Hin1I GRCGYC 2 cut(s) 583, 609
Hin1II CATG 4 cut(s) 67, 297, 400, 451
HinfI GANTC 4 cut(s) 25, 74, 161, 688
Hpy166II GTNNAC 4 cut(s) 8, 78, 266, 303
Hpy188I TCNGA 5 cut(s) 24, 166, 280, 577, 607
Hpy188III TCNNGA 2 cut(s) 271, 633
Hpy8I GTNNAC 4 cut(s) 8, 78, 266, 303
HpyAV CCTTC 3 cut(s) 57, 141, 416
HpyCH4V TGCA 4 cut(s) 67, 83, 303, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 423, 426
HpyF3I CTNAG 3 cut(s) 23, 277, 531
Hsp92I GRCGYC 2 cut(s) 583, 609
Hsp92II CATG 4 cut(s) 67, 297, 400, 451
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 1 cut(s) 562
LpnPI CCDG 8 cut(s) 46, 132, 138, 156, 183, 207, 237, 490
Lsp1109I GCAGC 4 cut(s) 95, 429, 438, 660
MaeI CTAG 2 cut(s) 258, 621
MaeIII GTNAC 2 cut(s) 176, 308
MalI GATC 1 cut(s) 564
MboI GATC 1 cut(s) 562
MboII GAAGA 1 cut(s) 391
MhlI GDGCHC 2 cut(s) 250, 305
MluCI AATT 1 cut(s) 201
MlyI GAGTC 2 cut(s) 34, 83
MmeI TCCRAC 1 cut(s) 625
MnlI CCTC 5 cut(s) 249, 516, 613, 625, 668
Mph1103I ATGCAT 2 cut(s) 69, 548
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 423, 426
NdeII GATC 1 cut(s) 562
NlaIII CATG 4 cut(s) 67, 297, 400, 451
NmuCI GTSAC 1 cut(s) 176
NsiI ATGCAT 2 cut(s) 69, 548
NspI RCATGY 2 cut(s) 297, 400
PciI ACATGT 2 cut(s) 293, 396
PfeI GAWTC 2 cut(s) 161, 688
PkrI GCNGC 5 cut(s) 85, 419, 428, 613, 675
PleI GAGTC 2 cut(s) 33, 82
PpsI GAGTC 2 cut(s) 33, 82
PscI ACATGT 2 cut(s) 293, 396
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 298
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 5 cut(s) 84, 418, 427, 612, 674
Sau3AI GATC 1 cut(s) 562
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 2 cut(s) 34, 83
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 2 cut(s) 250, 305
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 298
SmlI CTYRAG 2 cut(s) 40, 663
SmoI CTYRAG 2 cut(s) 40, 663
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 612
SspI AATATT 3 cut(s) 387, 458, 569
SspMI CTAG 2 cut(s) 258, 621
StyD4I CCNGG 1 cut(s) 169
TaqI TCGA 1 cut(s) 652
TasI AATT 1 cut(s) 201
TauI GCSGC 1 cut(s) 614
TfiI GAWTC 2 cut(s) 161, 688
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 4 cut(s) 83, 417, 426, 673
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 5 cut(s) 363, 420, 510, 570, 618
TspRI CASTG 1 cut(s) 181
VneI GTGCAC 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 107
XceI RCATGY 2 cut(s) 297, 400
XmiI GTMKAC 1 cut(s) 77
XspI CTAG 2 cut(s) 258, 621
Zsp2I ATGCAT 2 cut(s) 69, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.