pycom11g08730

Zinc finger RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012599
Physical Location & Seq
Reverse (-)
6836468 .. 6836767
300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08730.1

Sequence Viewer

Length: 300 bp
ATGAATTTGGATAAGTTGAAAGGCAAAAAGATTCCTGGAGAAAACAGTAAGAAGAGAGCAGCTGATCAACCTCCAGAGGATTTAGAAACTAAGAAAAGGAAGGTTCTTGAAAGTGGGGCAGCACCCGACGCTTTAAGGACTTGCGCGTTATGTAATGTGGTGTGTCTGAGCGAGATGGATTTCAACAATCATCGTGCCGGACAAAGGCACGTTGAAGCTGTTGCCGCGGCGAGGAGACATGGTGCTGGAACAAGTGGAACAAATGGCCATTGGCAGTCGCAGTGGAGATATCACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

100

Amino Acids

10.9

Weight (kDa)

9.55

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012599)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36400 FvH4_3g36400 FvH4_3g36400
malus_domestica MD00G1013500.v1.1 MD03G1090800.v1.1
prunus_persica Prupe.6G075200_v2.0.a1
pyrus_communis pycom03g07270 pycom11g08730
rosa_chinensis RchiOBHm_Chr5g0065291
rosa_laevigata RLG00000035778
rosa_multiflora Rmu_co8470125.1_g000001
rosa_roxburghii Rroxscaffold_1G00015900
rosa_rugosa Rorug05G0371000
rosa_samantha Rh5AG428800 Rh5BG444100 Rh5CG466300 Rh5DG456200 Rh5DG456300
rosa_wichuraiana Rw5G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 146, 227
AciI CCGC 2 cut(s) 225, 227
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 4
AfiI CCNNNNNNNGG 2 cut(s) 204, 231
AgsI TTSAA 4 cut(s) 19, 110, 184, 215
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 62, 218
AluI AGCT 2 cut(s) 62, 218
Alw26I GTCTC 1 cut(s) 229
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 59, 119
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 1 cut(s) 146
BalI TGGCCA 1 cut(s) 267
BbvI GCAGC 2 cut(s) 71, 131
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 36
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 229
BisI GCNGC 4 cut(s) 60, 120, 225, 228
BlsI GCNGC 4 cut(s) 61, 121, 226, 229
Bme1390I CCNGG 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 36
BpmI CTGGAG 2 cut(s) 57, 57
BsaJI CCNNGG 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 231
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 204, 231
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 71, 131
Bsh1236I CGCG 2 cut(s) 146, 227
BshFI GGCC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 204, 231
BsmAI GTCTC 1 cut(s) 229
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 2 cut(s) 225, 227
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 159
BspFNI CGCG 2 cut(s) 146, 227
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 47, 296
Bst6I CTCTTC 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 90, 167
BstDSI CCRYGG 1 cut(s) 225
BstFNI CGCG 2 cut(s) 146, 227
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 128, 224
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstUI CGCG 2 cut(s) 146, 227
BstV1I GCAGC 2 cut(s) 71, 131
BsuRI GGCC 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 287
CfoI GCGC 1 cut(s) 146
Cfr42I CCGCGG 1 cut(s) 228
CseI GACGC 1 cut(s) 137
CviAII CATG 1 cut(s) 239
CviJI RGCY 3 cut(s) 62, 218, 267
CviKI_1 RGCY 3 cut(s) 62, 218, 267
DdeI CTNAG 2 cut(s) 90, 167
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 34
EcoRV GATATC 1 cut(s) 290
FaeI CATG 1 cut(s) 242
FaiI YATR 2 cut(s) 151, 240
FatI CATG 1 cut(s) 238
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 4 cut(s) 60, 120, 225, 228
Fsp4HI GCNGC 4 cut(s) 60, 120, 225, 228
GlaI GCGC 1 cut(s) 145
GluI GCNGC 4 cut(s) 60, 120, 225, 228
GsuI CTGGAG 2 cut(s) 57, 57
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 198
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 242
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 1 cut(s) 31
HpaII CCGG 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 74, 107
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 47, 296
HpyCH4IV ACGT 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 224
HpyF3I CTNAG 2 cut(s) 90, 167
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 1 cut(s) 242
HspAI GCGC 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 64
KspI CCGCGG 1 cut(s) 228
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 21, 48, 87, 211, 231
Lsp1109I GCAGC 2 cut(s) 71, 131
MaeII ACGT 1 cut(s) 210
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 1 cut(s) 4
MluNI TGGCCA 1 cut(s) 267
MnlI CCTC 3 cut(s) 70, 81, 225
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 2 cut(s) 62, 227
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
MvnI CGCG 2 cut(s) 146, 227
MwoI GCNNNNNNNGC 2 cut(s) 128, 224
NdeII GATC 1 cut(s) 64
NlaIII CATG 1 cut(s) 242
PfeI GAWTC 1 cut(s) 31
PfoI TCCNGGA 1 cut(s) 34
PkrI GCNGC 4 cut(s) 61, 121, 226, 229
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 62
SacII CCGCGG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 4 cut(s) 60, 120, 225, 228
Sau3AI GATC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 36
SetI ASST 5 cut(s) 64, 73, 105, 213, 220
Sfr303I CCGCGG 1 cut(s) 228
SgrBI CCGCGG 1 cut(s) 228
Sse9I AATT 1 cut(s) 4
SsiI CCGC 2 cut(s) 225, 227
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 2 cut(s) 47, 296
TaiI ACGT 1 cut(s) 213
TasI AATT 1 cut(s) 4
TauI GCSGC 2 cut(s) 227, 230
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 287
TseI GCWGC 2 cut(s) 59, 119
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 287
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.