Rh5AG428800

Zinc finger RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012599
Physical Location & Seq
Forward (+)
73786632 .. 73790279
3648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG428800.1

Sequence Viewer

Length: 1071 bp
ATGGTCGACGCCATTGTTTGCTTCGTCTTGCTTGTATCGACCGCTAATCTCACCTTCCTTCACTGCATTTACATTTTTTATTTTTTTTTGGCTGCTTCAAATAAAGAGCTCAAATCAGAGCTCTACTGGATTAAAGAGCTTCATTGCATGCAAGCCACTTTGCCACCTTCAATTTCAGATATCTCCAAATTCAGAATCTGCCAAGTAACAATTTCCTTTGCTCCCTCCTCATTCAGATTTCGGAATTCCGGCGAAGATTTTGAGTTGGGGATTTCGGAGTTTCAGCTCCGGAATGCGAAACGTGACTTCGCAGTTCAGAAAATCAAATGGGTATTAGCAATTCTGGAAGTGTATACATGTAAACGACGCGATTGTAATTTGAGATGTCTCGGCCCTTACTTGAGATGTCTCGGTGCTCTGAAGAAATGGACGTTGCGATTGGAGCTGCGGAACAACCTTGAGAAGGCATTTTTAGAGCAGGGTAGAGCGTTATTGAGATTTGAAGCTCAATGGAAAGATCTTAAGACGGGACACACGAGAGAGCTTGAGCAGCGTGGTCTGCAACTGCAACAAAGGGGAATCTTAGTACCTTTAACTGGGACACAGCACTTCCCTCCTGCAAATCAGAATCCCACCTTGTGGAGTAACAGTACTACTCCTCGATGGAGTGACACCAATACCCCTCTTCCTCCTAGAGATAGCACAACGAAACTTTTTTGTGACATATGCAAAATTTTTTGCGACACTAAGATGGTACTTGATAAGCATAAAATGGGAAAGAAGCACCAGATGAACCTGGGGAAATTGAAAGGCAAAAATGTTACTGGACAAACGAGTAAGAAGAAGGCAGTTTATCCAACTGAAGACGATTTGCAGACTAAGAAACGGAGGGTTATTGAAGGTGGTGCAGCACCCCATACTTTAAGGACTTGTACTATATGTAACGTGGTCAGTATTAGTGCGACGGATTTCTATAAACATCTTGCTGGACAGCGACATAGAGATGCTGCTGCATTGATAAGTAATGGAGCTGGGACGAGTAGCTACAGCCAGCTGAGAATAAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

356

Amino Acids

40.67

Weight (kDa)

9.69

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012599)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36400 FvH4_3g36400 FvH4_3g36400
malus_domestica MD00G1013500.v1.1 MD03G1090800.v1.1
prunus_persica Prupe.6G075200_v2.0.a1
pyrus_communis pycom03g07270 pycom11g08730
rosa_chinensis RchiOBHm_Chr5g0065291
rosa_laevigata RLG00000035778
rosa_multiflora Rmu_co8470125.1_g000001
rosa_roxburghii Rroxscaffold_1G00015900
rosa_rugosa Rorug05G0371000
rosa_samantha Rh5AG428800 Rh5BG444100 Rh5CG466300 Rh5DG456200 Rh5DG456300
rosa_wichuraiana Rw5G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 639
AccI GTMKAC 2 cut(s) 6, 353
AccII CGCG 1 cut(s) 369
AccIII TCCGGA 1 cut(s) 288
AciI CCGC 2 cut(s) 42, 448
AcsI RAATTY 3 cut(s) 188, 244, 732
AcuI CTGAAG 2 cut(s) 440, 882
AcyI GRCGYC 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 639
AfaI GTAC 4 cut(s) 588, 652, 756, 934
AfiI CCNNNNNNNGG 3 cut(s) 463, 596, 639
AflII CTTAAG 1 cut(s) 521
AflIII ACRYGT 1 cut(s) 356
AgsI TTSAA 5 cut(s) 99, 171, 503, 808, 899
AjnI CCWGG 1 cut(s) 795
Alw21I GWGCWC 3 cut(s) 111, 123, 418
Alw26I GTCTC 2 cut(s) 392, 413
AlwNI CAGNNNCTG 1 cut(s) 198
Aor13HI TCCGGA 1 cut(s) 288
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 6 cut(s) 92, 445, 550, 908, 1007, 1010
ApoI RAATTY 3 cut(s) 188, 244, 732
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 43
BanII GRGCYC 2 cut(s) 111, 123
BauI CACGAG 1 cut(s) 535
BbsI GAAGAC 1 cut(s) 870
Bbv12I GWGCWC 3 cut(s) 111, 123, 418
BbvI GCAGC 6 cut(s) 79, 432, 562, 920, 994, 997
BccI CCATC 2 cut(s) 657, 745
BciT130I CCWGG 1 cut(s) 797
BcoDI GTCTC 2 cut(s) 392, 413
BfaI CTAG 1 cut(s) 693
BfmI CTRYAG 1 cut(s) 1045
BfrI CTTAAG 1 cut(s) 521
BglII AGATCT 1 cut(s) 517
BisI GCNGC 6 cut(s) 93, 446, 551, 909, 1008, 1011
BlsI GCNGC 6 cut(s) 94, 447, 552, 910, 1009, 1012
BmcAI AGTACT 1 cut(s) 652
Bme1390I CCNGG 1 cut(s) 797
BmgT120I GGNCC 1 cut(s) 392
BmrFI CCNGG 1 cut(s) 797
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 1 cut(s) 994
BmuI ACTGGG 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 870
BpuEI CTTGAG 3 cut(s) 421, 479, 566
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 796
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 3 cut(s) 463, 596, 639
Bse1I ACTGG 3 cut(s) 131, 601, 829
Bse3DI GCAATG 1 cut(s) 142
BseAI TCCGGA 1 cut(s) 288
BseBI CCWGG 1 cut(s) 797
BseDI CCNNGG 1 cut(s) 796
BseLI CCNNNNNNNGG 3 cut(s) 463, 596, 639
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 1046
BseNI ACTGG 3 cut(s) 131, 601, 829
BseRI GAGGAG 2 cut(s) 217, 648
BseXI GCAGC 6 cut(s) 79, 432, 562, 920, 994, 997
BseYI CCCAGC 1 cut(s) 1031
BsgI GTGCAG 1 cut(s) 927
Bsh1236I CGCG 1 cut(s) 369
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 393
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 3 cut(s) 111, 123, 418
BsiSI CCGG 2 cut(s) 249, 289
BslFI GGGAC 3 cut(s) 543, 613, 1048
BslI CCNNNNNNNGG 3 cut(s) 463, 596, 639
BsmAI GTCTC 2 cut(s) 392, 413
BsmFI GGGAC 3 cut(s) 543, 613, 1048
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 1 cut(s) 393
Bsp1286I GDGCHC 3 cut(s) 111, 123, 418
Bsp13I TCCGGA 1 cut(s) 288
Bsp143I GATC 1 cut(s) 517
BspACI CCGC 2 cut(s) 42, 448
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 1 cut(s) 1047
BspEI TCCGGA 1 cut(s) 288
BspFNI CGCG 1 cut(s) 369
BspTI CTTAAG 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 142
BsrI ACTGG 3 cut(s) 131, 601, 829
BssECI CCNNGG 1 cut(s) 796
BssMI GATC 1 cut(s) 517
BssNAI GTATAC 1 cut(s) 354
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 535
Bst1107I GTATAC 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 535
Bst2UI CCWGG 1 cut(s) 797
Bst4CI ACNGT 1 cut(s) 650
Bst6I CTCTTC 1 cut(s) 690
BstACI GRCGYC 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 521
BstC8I GCNNGC 3 cut(s) 149, 153, 1052
BstDEI CTNAG 4 cut(s) 583, 747, 879, 1055
BstENI CCTNNNNNAGG 1 cut(s) 461
BstFNI CGCG 1 cut(s) 369
BstKTI GATC 1 cut(s) 520
BstMAI GTCTC 2 cut(s) 392, 413
BstMBI GATC 1 cut(s) 517
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 3 cut(s) 442, 550, 559
BstNI CCWGG 1 cut(s) 797
BstNSI RCATGY 2 cut(s) 151, 360
BstSCI CCNGG 1 cut(s) 795
BstSFI CTRYAG 1 cut(s) 1045
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 6 cut(s) 79, 432, 562, 920, 994, 997
BstV2I GAAGAC 1 cut(s) 870
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BstZ17I GTATAC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 393
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 3 cut(s) 149, 153, 1052
CaiI CAGNNNCTG 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 392
CseI GACGC 2 cut(s) 17, 375
Csp6I GTAC 4 cut(s) 587, 651, 755, 933
CviAII CATG 2 cut(s) 148, 357
CviQI GTAC 4 cut(s) 587, 651, 755, 933
DdeI CTNAG 4 cut(s) 583, 747, 879, 1055
DpnI GATC 1 cut(s) 519
DpnII GATC 1 cut(s) 517
DraIII CACNNNGTG 1 cut(s) 639
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
Ecl136II GAGCTC 2 cut(s) 109, 121
Eco24I GRGCYC 2 cut(s) 111, 123
Eco32I GATATC 1 cut(s) 181
Eco53kI GAGCTC 2 cut(s) 109, 121
Eco57I CTGAAG 2 cut(s) 440, 882
EcoICRI GAGCTC 2 cut(s) 109, 121
EcoNI CCTNNNNNAGG 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 795
EcoRV GATATC 1 cut(s) 181
EcoT38I GRGCYC 2 cut(s) 111, 123
FaeI CATG 2 cut(s) 151, 360
FaqI GGGAC 3 cut(s) 543, 613, 1048
FatI CATG 2 cut(s) 147, 356
FauNDI CATATG 1 cut(s) 725
FblI GTMKAC 2 cut(s) 6, 353
Fnu4HI GCNGC 6 cut(s) 93, 446, 551, 909, 1008, 1011
FriOI GRGCYC 2 cut(s) 111, 123
Fsp4HI GCNGC 6 cut(s) 93, 446, 551, 909, 1008, 1011
FspBI CTAG 1 cut(s) 693
GluI GCNGC 6 cut(s) 93, 446, 551, 909, 1008, 1011
GsaI CCCAGC 1 cut(s) 1035
HaeIII GGCC 1 cut(s) 393
HapII CCGG 2 cut(s) 249, 289
HgaI GACGC 2 cut(s) 17, 375
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 151, 360
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 3 cut(s) 195, 579, 628
HpaII CCGG 2 cut(s) 249, 289
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 3 cut(s) 7, 354, 362
Hpy188I TCNGA 9 cut(s) 118, 178, 194, 236, 243, 277, 318, 420, 627
Hpy188III TCNNGA 2 cut(s) 289, 344
Hpy8I GTNNAC 3 cut(s) 7, 354, 362
Hpy99I CGWCG 3 cut(s) 11, 369, 967
HpyAV CCTTC 6 cut(s) 64, 68, 177, 457, 838, 893
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4IV ACGT 3 cut(s) 301, 431, 945
HpyF10VI GCNNNNNNNGC 3 cut(s) 442, 550, 559
HpyF3I CTNAG 4 cut(s) 583, 747, 879, 1055
HpySE526I ACGT 3 cut(s) 301, 431, 945
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 151, 360
Kpn2I TCCGGA 1 cut(s) 288
Kzo9I GATC 1 cut(s) 517
LmnI GCTCC 4 cut(s) 226, 291, 442, 1028
Lsp1109I GCAGC 6 cut(s) 79, 432, 562, 920, 994, 997
LweI GCATC 1 cut(s) 994
MaeI CTAG 1 cut(s) 693
MaeII ACGT 3 cut(s) 301, 431, 945
MaeIII GTNAC 7 cut(s) 205, 302, 644, 668, 719, 820, 941
MalI GATC 1 cut(s) 519
MboI GATC 1 cut(s) 517
MboII GAAGA 5 cut(s) 266, 433, 677, 853, 875
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 3 cut(s) 111, 123, 418
MluCI AATT 9 cut(s) 171, 188, 210, 244, 339, 376, 732, 803, 1066
MmeI TCCRAC 1 cut(s) 881
MnlI CCTC 7 cut(s) 235, 238, 624, 669, 693, 699, 882
MroI TCCGGA 1 cut(s) 288
MseI TTAA 4 cut(s) 132, 522, 593, 923
MslI CAYNNNNRTG 2 cut(s) 749, 1002
MspA1I CMGCKG 1 cut(s) 1054
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 2 cut(s) 249, 289
MspR9I CCNGG 1 cut(s) 797
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 797
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 442, 550, 559
NdeI CATATG 1 cut(s) 725
NdeII GATC 1 cut(s) 517
NlaIII CATG 2 cut(s) 151, 360
NmeAIII GCCGAG 1 cut(s) 369
NmuCI GTSAC 3 cut(s) 302, 668, 719
NspI RCATGY 2 cut(s) 151, 360
PaeI GCATGC 1 cut(s) 151
PciI ACATGT 1 cut(s) 356
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 3 cut(s) 195, 579, 628
PflMI CCANNNNNTGG 1 cut(s) 639
PkrI GCNGC 6 cut(s) 94, 447, 552, 910, 1009, 1012
PscI ACATGT 1 cut(s) 356
Psp124BI GAGCTC 2 cut(s) 111, 123
Psp6I CCWGG 1 cut(s) 795
PspFI CCCAGC 1 cut(s) 1031
PspGI CCWGG 1 cut(s) 795
PspPI GGNCC 1 cut(s) 392
PstNI CAGNNNCTG 1 cut(s) 198
PsuI RGATCY 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 1054
RsaI GTAC 4 cut(s) 588, 652, 756, 934
RsaNI GTAC 4 cut(s) 587, 651, 755, 933
RseI CAYNNNNRTG 2 cut(s) 749, 1002
SacI GAGCTC 2 cut(s) 111, 123
SalI GTCGAC 1 cut(s) 5
SaqAI TTAA 4 cut(s) 132, 522, 593, 923
SatI GCNGC 6 cut(s) 93, 446, 551, 909, 1008, 1011
Sau3AI GATC 1 cut(s) 517
Sau96I GGNCC 1 cut(s) 392
ScaI AGTACT 1 cut(s) 652
ScrFI CCNGG 1 cut(s) 797
SduI GDGCHC 3 cut(s) 111, 123, 418
SfaNI GCATC 1 cut(s) 994
SfcI CTRYAG 1 cut(s) 1045
SmiMI CAYNNNNRTG 2 cut(s) 749, 1002
SmlI CTYRAG 4 cut(s) 400, 458, 521, 545
SmoI CTYRAG 4 cut(s) 400, 458, 521, 545
SphI GCATGC 1 cut(s) 151
Sse9I AATT 9 cut(s) 171, 188, 210, 244, 339, 376, 732, 803, 1066
SsiI CCGC 2 cut(s) 42, 448
SspMI CTAG 1 cut(s) 693
SstI GAGCTC 2 cut(s) 111, 123
StyD4I CCNGG 1 cut(s) 795
TaaI ACNGT 1 cut(s) 650
TaiI ACGT 3 cut(s) 304, 434, 948
TaqI TCGA 3 cut(s) 6, 38, 661
TasI AATT 9 cut(s) 171, 188, 210, 244, 339, 376, 732, 803, 1066
TatI WGTACW 2 cut(s) 650, 932
TfiI GAWTC 3 cut(s) 195, 579, 628
Tru1I TTAA 4 cut(s) 132, 522, 593, 923
Tru9I TTAA 4 cut(s) 132, 522, 593, 923
TscAI CASTG 1 cut(s) 68
TseFI GTSAC 3 cut(s) 302, 668, 719
TseI GCWGC 6 cut(s) 92, 445, 550, 908, 1007, 1010
Tsp45I GTSAC 3 cut(s) 302, 668, 719
TspDTI ATGAA 2 cut(s) 131, 806
TspGWI ACGGA 2 cut(s) 901, 980
TspRI CASTG 1 cut(s) 68
Van91I CCANNNNNTGG 1 cut(s) 639
Vha464I CTTAAG 1 cut(s) 521
XagI CCTNNNNNAGG 1 cut(s) 461
XapI RAATTY 3 cut(s) 188, 244, 732
XceI RCATGY 2 cut(s) 151, 360
XmiI GTMKAC 2 cut(s) 6, 353
XspI CTAG 1 cut(s) 693
ZrmI AGTACT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.