Prupe.6G075200_v2.0.a1

Zinc finger RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012599
Physical Location & Seq
Reverse (-)
5158717 .. 5163416
4700 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G075200.1

Sequence Viewer

Length: 786 bp
ATGCCCAATTTTCCAGAACACTTATTTTTCATGTTTGAAATGGCTAGCTGTTCAGAAGAAATGGATAAAGCCATTGCAAAATTGCATCAAAACTTTCAGGACCTAAGGTACCACCTTGAGAAGGCATTCTTAGAGCAGGGCAGAGCCTTGTTGAAATTTGAAGCTCAATGGAATGATCTTAAGAAAGAGCACAAGAAAGGTCTTGAGCAGCATGAGGTCAACCTGCAGCAAATGGGTATCTCAGTGCCATCAATTGGGACAGGACACTTTGCTACTGCAAATCCGAATGCCGCCTTGTGGAGCAACTCCACTGCTTGGGCTTCTGGAAATGGTACTCCGACTGCTTGGGCTTCTGGAAATGGTACTCCGACTTCTCGGGCTTCTGGAAATGGTACTCCAAAACTTCATTGTGACATATGCAATGTTTATTGCGACACCAAGGAGGTACTTGATAAGCATAAATTGGGAAAAAAACACAAGATGAACATGGATAAGTTGAAAGGCAAAAAACCCATCCCTGGACAAAATAGTAAGAGGAAAGCTGCTTATCAACCTGTAGAGGATTTGGAAACTAAGAGAAGGAAGGTTCTTGAAAGTGGGGCAGCACCCCATACTTTAAGGACTTGTGCTATATGTAATGTGGTCTGTCTTAGTGAGACAGATTTCAATAATCATCGTGCGGGGCAGAGGCATGCTGATGCTGTTGTTGCTATGGCAAAGAAGCATGCAGCTGGAACTAGTAGCCACCACCAGCCGGAAAGGAGATTTTATGGTGGAAATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

262

Amino Acids

29.04

Weight (kDa)

9.26

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012599)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36400 FvH4_3g36400 FvH4_3g36400
malus_domestica MD00G1013500.v1.1 MD03G1090800.v1.1
prunus_persica Prupe.6G075200_v2.0.a1
pyrus_communis pycom03g07270 pycom11g08730
rosa_chinensis RchiOBHm_Chr5g0065291
rosa_laevigata RLG00000035778
rosa_multiflora Rmu_co8470125.1_g000001
rosa_roxburghii Rroxscaffold_1G00015900
rosa_rugosa Rorug05G0371000
rosa_samantha Rh5AG428800 Rh5BG444100 Rh5CG466300 Rh5DG456200 Rh5DG456300
rosa_wichuraiana Rw5G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 231
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AccB7I CCANNNNNTGG 2 cut(s) 254, 315
AciI CCGC 2 cut(s) 291, 680
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 5 cut(s) 110, 334, 364, 394, 447
AfiI CCNNNNNNNGG 6 cut(s) 121, 254, 297, 315, 518, 754
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 6 cut(s) 38, 154, 161, 499, 593, 667
AhlI ACTAGT 1 cut(s) 737
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 4 cut(s) 48, 164, 542, 731
AluI AGCT 4 cut(s) 48, 164, 542, 731
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 650
Ama87I CYCGRG 1 cut(s) 375
ApeKI GCWGC 5 cut(s) 208, 226, 542, 602, 728
ApoI RAATTY 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 125
Asp718I GGTACC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 100
AsuNHI GCTAGC 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 375
AvaII GGWCC 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 104
BanI GGYRCC 1 cut(s) 108
BarI GAAGNNNNNNTAC 2 cut(s) 355, 387
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 5 cut(s) 220, 238, 529, 614, 740
BccI CCATC 2 cut(s) 256, 521
BciT130I CCWGG 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 650
BcuI ACTAGT 1 cut(s) 737
BfaI CTAG 2 cut(s) 45, 738
BfmI CTRYAG 2 cut(s) 224, 555
BfrI CTTAAG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 231
BisI GCNGC 6 cut(s) 209, 227, 291, 543, 603, 729
BlsI GCNGC 6 cut(s) 210, 228, 292, 544, 604, 730
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 94, 688
BmtI GCTAGC 1 cut(s) 48
BpuEI CTTGAG 2 cut(s) 137, 224
BsaJI CCNNGG 2 cut(s) 438, 517
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 254, 297, 315, 518, 754
Bse21I CCTNAGG 1 cut(s) 104
Bse3DI GCAATG 2 cut(s) 72, 427
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 2 cut(s) 438, 517
BseGI GGATG 1 cut(s) 513
BseLI CCNNNNNNNGG 6 cut(s) 121, 254, 297, 315, 518, 754
BseMI GCAATG 2 cut(s) 72, 427
BseMII CTCAG 1 cut(s) 255
BseXI GCAGC 5 cut(s) 220, 238, 529, 614, 740
BshNI GGYRCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 1 cut(s) 755
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 6 cut(s) 121, 254, 297, 315, 518, 754
BsmAI GTCTC 1 cut(s) 650
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 2 cut(s) 125, 292
BsoBI CYCGRG 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 2 cut(s) 291, 680
BspCNI CTCAG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 110
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 231
BspOI GCTAGC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 179
BsrDI GCAATG 2 cut(s) 72, 427
BssECI CCNNGG 2 cut(s) 438, 517
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 519
BstAFI CTTAAG 1 cut(s) 179
BstC8I GCNNGC 3 cut(s) 46, 693, 726
BstDEI CTNAG 5 cut(s) 104, 130, 241, 573, 650
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 513
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 650
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 707
BstNI CCWGG 1 cut(s) 519
BstNSI RCATGY 2 cut(s) 695, 728
BstSCI CCNGG 1 cut(s) 517
BstSFI CTRYAG 2 cut(s) 224, 555
BstV1I GCAGC 5 cut(s) 220, 238, 529, 614, 740
Bsu36I CCTNAGG 1 cut(s) 104
BtsCI GGATG 1 cut(s) 513
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 249, 309
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 3 cut(s) 46, 693, 726
Cfr13I GGNCC 1 cut(s) 100
Csp6I GTAC 5 cut(s) 109, 333, 363, 393, 446
CviAII CATG 5 cut(s) 31, 212, 487, 692, 725
CviQI GTAC 5 cut(s) 109, 333, 363, 393, 446
DdeI CTNAG 5 cut(s) 104, 130, 241, 573, 650
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 100
Eco81I CCTNAGG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 375
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 5 cut(s) 34, 215, 490, 695, 728
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 271
FatI CATG 5 cut(s) 30, 211, 486, 691, 724
FauI CCCGC 1 cut(s) 673
FauNDI CATATG 1 cut(s) 416
Fnu4HI GCNGC 6 cut(s) 209, 227, 291, 543, 603, 729
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 6 cut(s) 209, 227, 291, 543, 603, 729
FspBI CTAG 2 cut(s) 45, 738
GluI GCNGC 6 cut(s) 209, 227, 291, 543, 603, 729
HapII CCGG 1 cut(s) 755
Hin1II CATG 5 cut(s) 34, 215, 490, 695, 728
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HpaII CCGG 1 cut(s) 755
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 4 cut(s) 55, 285, 339, 369
Hpy188III TCNNGA 7 cut(s) 14, 98, 203, 324, 354, 384, 590
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 3 cut(s) 115, 573, 577
HpyCH4V TGCA 6 cut(s) 77, 85, 226, 278, 420, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 707
HpyF3I CTNAG 5 cut(s) 104, 130, 241, 573, 650
Hsp92II CATG 5 cut(s) 34, 215, 490, 695, 728
KpnI GGTACC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 300
Lsp1109I GCAGC 5 cut(s) 220, 238, 529, 614, 740
LweI GCATC 2 cut(s) 94, 688
MaeI CTAG 2 cut(s) 45, 738
MaeIII GTNAC 1 cut(s) 410
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 68
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 5 cut(s) 7, 80, 155, 252, 461
MmeI TCCRAC 2 cut(s) 362, 392
MnlI CCTC 5 cut(s) 208, 436, 528, 553, 681
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 2 cut(s) 180, 617
MslI CAYNNNNRTG 1 cut(s) 696
MspA1I CMGCKG 1 cut(s) 731
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 1 cut(s) 755
MspR9I CCNGG 1 cut(s) 519
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 2 cut(s) 125, 292
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 1 cut(s) 707
NdeI CATATG 1 cut(s) 416
NdeII GATC 1 cut(s) 175
NheI GCTAGC 1 cut(s) 44
NlaIII CATG 5 cut(s) 34, 215, 490, 695, 728
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 2 cut(s) 695, 728
PaeI GCATGC 2 cut(s) 695, 728
PctI GAATGC 2 cut(s) 125, 292
PdmI GAANNNNTTC 1 cut(s) 125
PflMI CCANNNNNTGG 2 cut(s) 254, 315
PkrI GCNGC 6 cut(s) 210, 228, 292, 544, 604, 730
PpuMI RGGWCCY 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 100
PspPPI RGGWCCY 1 cut(s) 100
PstI CTGCAG 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 5 cut(s) 110, 334, 364, 394, 447
RsaNI GTAC 5 cut(s) 109, 333, 363, 393, 446
RseI CAYNNNNRTG 1 cut(s) 696
SaqAI TTAA 2 cut(s) 180, 617
SatI GCNGC 6 cut(s) 209, 227, 291, 543, 603, 729
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 2 cut(s) 94, 688
SfcI CTRYAG 2 cut(s) 224, 555
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 3 cut(s) 116, 179, 203
SmoI CTYRAG 3 cut(s) 116, 179, 203
SpeI ACTAGT 1 cut(s) 737
SphI GCATGC 2 cut(s) 695, 728
Sse9I AATT 5 cut(s) 7, 80, 155, 252, 461
SsiI CCGC 2 cut(s) 291, 680
SspMI CTAG 2 cut(s) 45, 738
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 438
TasI AATT 5 cut(s) 7, 80, 155, 252, 461
TauI GCSGC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 180, 617
Tru9I TTAA 2 cut(s) 180, 617
TscAI CASTG 2 cut(s) 249, 316
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 5 cut(s) 208, 226, 542, 602, 728
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 19, 395, 497
TspRI CASTG 2 cut(s) 249, 316
Van91I CCANNNNNTGG 2 cut(s) 254, 315
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 100
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 155
XceI RCATGY 2 cut(s) 695, 728
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 2 cut(s) 45, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.