MD00G1013500.v1.1

Zinc finger RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0012599
Physical Location & Seq
Forward (+)
1701696 .. 1705474
3779 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1013500.v1.1.491

Sequence Viewer

Length: 663 bp
ATGCAATTGGAATTGAGGTACCACCTTGAGAAGTCCTTCTTAGAGCAGGGCAGGGCCCTGTTGAAATTTGAAGCTCAGTGGAAAGATCTTAAGAAAGATCTTAGCAGAGAAAACGAGCAGCGGCAGGTTCATCTGCAACAAATGGGTTTCTCAATTCCATCAAATGGGACAGAGCATTATGCTTCTGCAAATCCGAATGCTGCATCGTGGAGTAATTCTAGTGCTCGGCCGGCTGGAAATGCTGTTCCTCGGCCTTCTGGAAATGGTACTCCGAAACTGCATTGTGAGGTATGCAATATTTATTGCGACACCAAGGATGTACTCAATAAGCATAAACAGGGGAAAAAGCACAAGATGAATTTGGATAAGTTGAAAGGCAAAAAGATTCCTGGAGAAAACAGTAAGAAGAGAGCAGCTGATCAACCTCCAGATGATTTAGAAACTAAGAAAAGGAAGGTTCTTGAAAGTGGGGCAGCACCCGACGCTTTAAGGACTTGCGCGTTATGTAATGTGGTGTGTCTGAGTGAGATGGATTTCAACAATCATCGTGCCGGACAAAGGCACGTTGAAGCTGTTGCCGCGGCGAGGAGACATGGTGCTGGAACAAGTGCAACAAACAGCCATTGGCAGTCGCAGTGGAGATATCAGGGTTGGAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

221

Amino Acids

24.69

Weight (kDa)

9.53

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012599)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36400 FvH4_3g36400 FvH4_3g36400
malus_domestica MD00G1013500.v1.1 MD03G1090800.v1.1
prunus_persica Prupe.6G075200_v2.0.a1
pyrus_communis pycom03g07270 pycom11g08730
rosa_chinensis RchiOBHm_Chr5g0065291
rosa_laevigata RLG00000035778
rosa_multiflora Rmu_co8470125.1_g000001
rosa_roxburghii Rroxscaffold_1G00015900
rosa_rugosa Rorug05G0371000
rosa_samantha Rh5AG428800 Rh5BG444100 Rh5CG466300 Rh5DG456200 Rh5DG456300
rosa_wichuraiana Rw5G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
Acc65I GGTACC 1 cut(s) 18
AccB1I GGYRCC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 164
AccII CGCG 2 cut(s) 500, 581
AciI CCGC 3 cut(s) 121, 579, 581
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 3 cut(s) 65, 358, 655
AfaI GTAC 3 cut(s) 20, 268, 321
AfiI CCNNNNNNNGG 3 cut(s) 164, 558, 585
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 6 cut(s) 64, 71, 373, 464, 538, 569
AjnI CCWGG 1 cut(s) 388
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 3 cut(s) 74, 416, 572
AluI AGCT 3 cut(s) 74, 416, 572
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 583
AoxI GGCC 3 cut(s) 54, 227, 251
ApaI GGGCCC 1 cut(s) 58
ApeKI GCWGC 4 cut(s) 118, 200, 413, 473
ApoI RAATTY 3 cut(s) 65, 358, 655
Asp700I GAANNNNTTC 1 cut(s) 35
Asp718I GGTACC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 2 cut(s) 54, 55
BaeGI GKGCMC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 18
BanII GRGCYC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 4 cut(s) 130, 187, 425, 485
BccI CCATC 2 cut(s) 166, 523
BciT130I CCWGG 1 cut(s) 390
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 583
BfaI CTAG 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 115
BglII AGATCT 2 cut(s) 85, 97
BisI GCNGC 7 cut(s) 119, 122, 201, 414, 474, 579, 582
BlsI GCNGC 7 cut(s) 120, 123, 202, 415, 475, 580, 583
Bme1390I CCNGG 1 cut(s) 390
BmgT120I GGNCC 2 cut(s) 54, 55
BmiI GGNNCC 2 cut(s) 20, 56
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 212
BpmI CTGGAG 2 cut(s) 411, 411
BpuEI CTTGAG 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 248, 312, 579
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 558, 585
Bse118I RCCGGY 1 cut(s) 229
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 3 cut(s) 248, 312, 579
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 3 cut(s) 164, 558, 585
BseMII CTCAG 2 cut(s) 89, 512
BseRI GAGGAG 1 cut(s) 601
BseSI GKGCMC 1 cut(s) 58
BseX3I CGGCCG 1 cut(s) 227
BseXI GCAGC 4 cut(s) 130, 187, 425, 485
Bsh1236I CGCG 2 cut(s) 500, 581
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 3 cut(s) 56, 229, 253
BshNI GGYRCC 1 cut(s) 18
BsiEI CGRYCG 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 226
BsiSI CCGG 2 cut(s) 230, 552
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 3 cut(s) 164, 558, 585
BsmAI GTCTC 1 cut(s) 583
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 3 cut(s) 56, 229, 253
Bsp120I GGGCCC 1 cut(s) 54
Bsp1286I GDGCHC 2 cut(s) 58, 226
Bsp143I GATC 3 cut(s) 85, 97, 418
BspACI CCGC 3 cut(s) 121, 579, 581
BspANI GGCC 3 cut(s) 56, 229, 253
BspCNI CTCAG 2 cut(s) 88, 513
BspFNI CGCG 2 cut(s) 500, 581
BspLI GGNNCC 2 cut(s) 20, 56
BspMI ACCTGC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 18
BspTI CTTAAG 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 3 cut(s) 248, 312, 579
BssMI GATC 3 cut(s) 85, 97, 418
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 1 cut(s) 401
BstAFI CTTAAG 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 5 cut(s) 40, 75, 101, 444, 521
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 322
BstFNI CGCG 2 cut(s) 500, 581
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 3 cut(s) 88, 100, 421
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 3 cut(s) 85, 97, 418
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 4 cut(s) 230, 239, 482, 578
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 388
BstSLI GKGCMC 1 cut(s) 58
BstUI CGCG 2 cut(s) 500, 581
BstV1I GCAGC 4 cut(s) 130, 187, 425, 485
BstX2I RGATCY 2 cut(s) 85, 97
BstYI RGATCY 2 cut(s) 85, 97
BstZI CGGCCG 1 cut(s) 227
BsuRI GGCC 3 cut(s) 56, 229, 253
BtgI CCRYGG 1 cut(s) 579
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 641
BtsIMutI CAGTG 2 cut(s) 83, 641
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 231
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 54, 55
Cfr42I CCGCGG 1 cut(s) 582
CseI GACGC 1 cut(s) 491
Csp6I GTAC 3 cut(s) 19, 267, 320
CviAII CATG 1 cut(s) 593
CviJI RGCY 8 cut(s) 56, 74, 229, 233, 253, 416, 572, 621
CviKI_1 RGCY 8 cut(s) 56, 74, 229, 233, 253, 416, 572, 621
CviQI GTAC 3 cut(s) 19, 267, 320
DdeI CTNAG 5 cut(s) 40, 75, 101, 444, 521
DpnI GATC 3 cut(s) 87, 99, 420
DpnII GATC 3 cut(s) 85, 97, 418
EaeI YGGCCR 1 cut(s) 227
EagI CGGCCG 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
EclXI CGGCCG 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 644
Eco52I CGGCCG 1 cut(s) 227
EcoO109I RGGNCCY 2 cut(s) 54, 55
EcoRI GAATTC 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 388
EcoRV GATATC 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 1 cut(s) 596
FaiI YATR 6 cut(s) 180, 292, 333, 505, 594, 661
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 1 cut(s) 181
FatI CATG 1 cut(s) 592
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 7 cut(s) 119, 122, 201, 414, 474, 579, 582
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 7 cut(s) 119, 122, 201, 414, 474, 579, 582
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 499
GluI GCNGC 7 cut(s) 119, 122, 201, 414, 474, 579, 582
GsuI CTGGAG 2 cut(s) 411, 411
HaeIII GGCC 3 cut(s) 56, 229, 253
HapII CCGG 2 cut(s) 230, 552
HgaI GACGC 1 cut(s) 491
HhaI GCGC 1 cut(s) 500
Hin1II CATG 1 cut(s) 596
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HinfI GANTC 1 cut(s) 385
HpaII CCGG 2 cut(s) 230, 552
Hpy188I TCNGA 3 cut(s) 195, 273, 522
Hpy188III TCNNGA 3 cut(s) 258, 428, 461
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 3 cut(s) 46, 264, 448
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 7 cut(s) 4, 136, 188, 203, 280, 294, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 239, 482, 578
HpyF3I CTNAG 5 cut(s) 40, 75, 101, 444, 521
HpySE526I ACGT 1 cut(s) 564
Hsp92II CATG 1 cut(s) 596
HspAI GCGC 1 cut(s) 498
KpnI GGTACC 1 cut(s) 22
KroI GCCGGC 1 cut(s) 229
KroNI GCCGGC 1 cut(s) 231
Ksp22I TGATCA 1 cut(s) 418
KspI CCGCGG 1 cut(s) 582
Kzo9I GATC 3 cut(s) 85, 97, 418
Lsp1109I GCAGC 4 cut(s) 130, 187, 425, 485
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 564
MalI GATC 3 cut(s) 87, 99, 420
MboI GATC 3 cut(s) 85, 97, 418
MboII GAAGA 1 cut(s) 418
MfeI CAATTG 1 cut(s) 5
MflI RGATCY 2 cut(s) 85, 97
MhlI GDGCHC 2 cut(s) 58, 226
MluCI AATT 7 cut(s) 5, 11, 65, 153, 214, 358, 655
MmeI TCCRAC 1 cut(s) 632
MnlI CCTC 5 cut(s) 9, 258, 280, 435, 579
MroNI GCCGGC 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 2 cut(s) 90, 488
MspA1I CMGCKG 3 cut(s) 121, 416, 581
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 2 cut(s) 230, 552
MspR9I CCNGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 1 cut(s) 390
MvnI CGCG 2 cut(s) 500, 581
MwoI GCNNNNNNNGC 4 cut(s) 230, 239, 482, 578
NaeI GCCGGC 1 cut(s) 231
NdeII GATC 3 cut(s) 85, 97, 418
NgoMIV GCCGGC 1 cut(s) 229
NlaIII CATG 1 cut(s) 596
NlaIV GGNNCC 2 cut(s) 20, 56
NmeAIII GCCGAG 2 cut(s) 205, 229
PctI GAATGC 1 cut(s) 202
PdiI GCCGGC 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 385
PflMI CCANNNNNTGG 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 388
PkrI GCNGC 7 cut(s) 120, 123, 202, 415, 475, 580, 583
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 2 cut(s) 20, 56
PspOMI GGGCCC 1 cut(s) 54
PspPI GGNCC 2 cut(s) 54, 55
PsuI RGATCY 2 cut(s) 85, 97
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 3 cut(s) 20, 268, 321
RsaNI GTAC 3 cut(s) 19, 267, 320
SacII CCGCGG 1 cut(s) 582
SaqAI TTAA 2 cut(s) 90, 488
SatI GCNGC 7 cut(s) 119, 122, 201, 414, 474, 579, 582
Sau3AI GATC 3 cut(s) 85, 97, 418
Sau96I GGNCC 2 cut(s) 54, 55
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 2 cut(s) 58, 226
SfaNI GCATC 1 cut(s) 212
Sfr303I CCGCGG 1 cut(s) 582
SgrBI CCGCGG 1 cut(s) 582
SmlI CTYRAG 2 cut(s) 26, 89
SmoI CTYRAG 2 cut(s) 26, 89
Sse9I AATT 7 cut(s) 5, 11, 65, 153, 214, 358, 655
SsiI CCGC 3 cut(s) 121, 579, 581
SspI AATATT 1 cut(s) 298
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 1 cut(s) 567
TasI AATT 7 cut(s) 5, 11, 65, 153, 214, 358, 655
TatI WGTACW 1 cut(s) 319
TauI GCSGC 3 cut(s) 124, 581, 584
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 2 cut(s) 90, 488
Tru9I TTAA 2 cut(s) 90, 488
TscAI CASTG 2 cut(s) 83, 641
TseI GCWGC 4 cut(s) 118, 200, 413, 473
TspDTI ATGAA 3 cut(s) 119, 371, 648
TspRI CASTG 2 cut(s) 83, 641
Van91I CCANNNNNTGG 1 cut(s) 164
Vha464I CTTAAG 1 cut(s) 89
XapI RAATTY 3 cut(s) 65, 358, 655
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.