Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011989

Physical Location & Seq

Genomic Coordinates Forward (+)

36293371 .. 36297346

Gene Structure 3976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43551.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCAGAAGCACCCCAGATTGCCATTTGTGGAGCTGGTACGTTTGTGAAGACCCAATACATTCCAAGGCTGGCTGAGATCTCTAACCTTGTCAATCTTAAAGCCATTTGGAGCCGTTCAGAGGAATCCGCTAGAGGTGCTGTTGAGATTGCTAGGAAACATTTCCCAGGAGTAGAATGCAAATGGGGTGATCAGGGTCTTGAGGAAATTATTGCAGATAGTTCAATTCTTGGTGTTGCTGTGGTTTTAGCTGGCCAAGCTCAGGTGGATTTCTCACTGAAGCTGCTCAGGGCAGGGAAGAATGTCCTTCAAGAGAAACCAGCAGCTGCTACTACAAGTGAACTTGAAATTGCACTGTCAAGTTATAAATCTATTGTTGCAAATACCCCCAATAAACCAATATGGGCTATAGCAGAAAATTATCGATTTGAACCTGCTTTTGTTGAGGGCAAAAAACTAATGACTGAAATTGGAGATGTGATGAGCATCCAAGTTATTGTTGAAGGATCTATGAACAGTTCAAACCCTTACTTCTCAAGCTCTTGGAGGCGAAACTTCAATGGTGGTTTCATTCTTGACATGGGAGTACATTTCATGGCAGGACTGAGGATGCTTGCTGGATGTGAGATAGTCTCAGTGTCAGCTACAACGTCTCATGTCGACAAGACTTTACCTCCCCCAGATAACATATCCTCTCTCTTTCAATTGGAGAATGGGTGTTCTGGGATTTTTGTTATGGTGGTCTCCTCAAGGTCTCCCAAGATAGTTTGGCGATTTGTTGGCTTGAAGGGAACACTGGAAGTTGAGCGTGGAAACCAAGATGGAAGACACGGCTATGTGGTCATATTTTACAGTGCTGATGGACAAAGGAAAACCTCCTTCTACCCATTTAGTGGAGTCACCGAAGAATTCATAGCTTTTATTAATGACATAAAGCAAGCCACTTTAAAGAAGGGAGCTGGCTATGAAGCTGAGCCTCGCATGTCATTTCTGGAAGGTGCTAGAGATGTTGCTGTTCTAGAGGCAATGCTCGAATCTGGAGGAAAGCAAGGGGCACCAGTCCTTGTGAAGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0016491 GO:0019362 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

360

Amino Acids

39.05

Weight (kDa)

6.48

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GFO_IDH_MocA	PF01408	7 - 117	2e-11	Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3	PF22725	156 - 267	3.4e-13	GFO/IDH/MocA C-terminal domain
GFO_IDH_MocA_C	PF02894	156 - 347	4.5e-11	Oxidoreductase family, C-terminal alpha/beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20790
fragaria_vesca	FvH4_3g43551 FvH4_3g43551
malus_domestica	MD11G1022800.v1.1
prunus_persica	Prupe.6G018500_v2.0.a1
pyrus_communis	pycom11g01860
rosa_chinensis	RchiOBHm_Chr5g0078111
rosa_laevigata	RLG00000031428 RLG00000036752
rosa_multiflora	Rmu_sc0019972.1_g000004
rosa_roxburghii	Rroxscaffold_1G00000370 Rroxscaffold_1G00004110
rosa_rugosa	Rorug05G0458500 Rorug05G0458600
rosa_samantha	Rh5AG052300 Rh5AG513200 Rh5CG559000 Rh5DG119600
rosa_wichuraiana	Rw5G047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
Acc36I	ACCTGC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	1054
AccB7I	CCANNNNNTGG	1 cut(s)	893
AccI	GTMKAC	1 cut(s)	660
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	908, 1073
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	40, 588
AfiI	CCNNNNNNNGG	3 cut(s)	121, 262, 893
AgsI	TTSAA	9 cut(s)	225, 311, 347, 431, 503, 522, 559, 704, 787
AjnI	CCWGG	1 cut(s)	166
Alw26I	GTCTC	4 cut(s)	637, 657, 748, 759
AlwI	GGATC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	3 cut(s)	283, 323, 326
ApoI	RAATTY	2 cut(s)	908, 1073
AseI	ATTAAT	1 cut(s)	924
Asp700I	GAANNNNTTC	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	200, 892
BaeGI	GKGCMC	1 cut(s)	1057
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BalI	TGGCCA	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	1054
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BbsI	GAAGAC	2 cut(s)	56, 832
BbvI	GCAGC	3 cut(s)	270, 313, 335
BccI	CCATC	2 cut(s)	815, 854
BceAI	ACGGC	2 cut(s)	99, 847
BciT130I	CCWGG	1 cut(s)	168
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	4 cut(s)	637, 657, 748, 759
BfaI	CTAG	4 cut(s)	132, 153, 1002, 1019
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	3 cut(s)	284, 324, 327
BlpI	GCTNAGC	1 cut(s)	972
BlsI	GCNGC	3 cut(s)	285, 325, 328
Bme1390I	CCNGG	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	113, 1056
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	495, 600
BpiI	GAAGAC	2 cut(s)	56, 832
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	1 cut(s)	1059
Bpu10I	CCTNAGC	2 cut(s)	261, 287
Bpu1102I	GCTNAGC	1 cut(s)	972
BpuEI	CTTGAG	3 cut(s)	221, 520, 733
Bsa29I	ATCGAT	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	485
BsaI	GGTCTC	2 cut(s)	748, 759
BsaJI	CCNNGG	2 cut(s)	65, 166
BsaXI	ACNNNNNCTCC	4 cut(s)	658, 688, 701, 731
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 262, 893
Bse1I	ACTGG	2 cut(s)	801, 1058
Bse3DI	GCAATG	1 cut(s)	1032
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	424
BseDI	CCNNGG	2 cut(s)	65, 166
BseGI	GGATG	3 cut(s)	486, 615, 626
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	3 cut(s)	121, 262, 893
BseMI	GCAATG	1 cut(s)	1032
BseMII	CTCAG	6 cut(s)	66, 275, 301, 596, 648, 963
BseNI	ACTGG	2 cut(s)	801, 1058
BseRI	GAGGAG	1 cut(s)	736
BseSI	GKGCMC	1 cut(s)	1057
BseXI	GCAGC	3 cut(s)	270, 313, 335
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	1054
BshVI	ATCGAT	1 cut(s)	424
BslI	CCNNNNNNNGG	3 cut(s)	121, 262, 893
BsmAI	GTCTC	4 cut(s)	637, 657, 748, 759
BsmBI	CGTCTC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	2 cut(s)	748, 759
Bsp1286I	GDGCHC	1 cut(s)	1057
Bsp143I	GATC	3 cut(s)	78, 190, 506
Bsp1720I	GCTNAGC	1 cut(s)	972
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	6 cut(s)	67, 274, 300, 597, 647, 964
BspDI	ATCGAT	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	113, 1056
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	1054
BspTNI	GGTCTC	2 cut(s)	748, 759
BsrDI	GCAATG	1 cut(s)	1032
BsrI	ACTGG	2 cut(s)	801, 1058
BssECI	CCNNGG	2 cut(s)	65, 166
BssMI	GATC	3 cut(s)	78, 190, 506
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	3 cut(s)	357, 518, 854
BstC8I	GCNNGC	5 cut(s)	72, 253, 615, 939, 961
BstDEI	CTNAG	6 cut(s)	75, 261, 287, 605, 634, 972
BstF5I	GGATG	3 cut(s)	486, 615, 626
BstKTI	GATC	3 cut(s)	81, 193, 509
BstMAI	GTCTC	4 cut(s)	637, 657, 748, 759
BstMBI	GATC	3 cut(s)	78, 190, 506
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 257
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	985
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	1057
BstV1I	GCAGC	3 cut(s)	270, 313, 335
BstV2I	GAAGAC	2 cut(s)	56, 832
BstX2I	RGATCY	2 cut(s)	78, 506
BstYI	RGATCY	2 cut(s)	78, 506
Bsu15I	ATCGAT	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	486, 615, 626
BtsIMutI	CAGTG	5 cut(s)	275, 353, 642, 794, 859
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	5 cut(s)	72, 253, 615, 939, 961
CaiI	CAGNNNCTG	1 cut(s)	326
ClaI	ATCGAT	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	39, 587
CviAII	CATG	4 cut(s)	580, 595, 656, 982
CviQI	GTAC	2 cut(s)	39, 587
DdeI	CTNAG	6 cut(s)	75, 261, 287, 605, 634, 972
DpnI	GATC	3 cut(s)	80, 192, 508
DpnII	GATC	3 cut(s)	78, 190, 506
DraI	TTTAAA	1 cut(s)	948
EaeI	YGGCCR	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	65
Eco31I	GGTCTC	2 cut(s)	748, 759
Eco57I	CTGAAG	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	908
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	657
FaeI	CATG	4 cut(s)	583, 598, 659, 985
FatI	CATG	4 cut(s)	579, 594, 655, 981
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	3 cut(s)	284, 324, 327
FokI	GGATG	3 cut(s)	473, 622, 633
Fsp4HI	GCNGC	3 cut(s)	284, 324, 327
FspBI	CTAG	4 cut(s)	132, 153, 1002, 1019
GluI	GCNGC	3 cut(s)	284, 324, 327
GsuI	CTGGAG	1 cut(s)	1059
HaeIII	GGCC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	583, 598, 659, 985
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	3 cut(s)	125, 897, 1034
HphI	GGTGA	2 cut(s)	200, 892
Hpy166II	GTNNAC	2 cut(s)	341, 661
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	6 cut(s)	200, 311, 575, 992, 1019, 1038
Hpy8I	GTNNAC	2 cut(s)	341, 661
HpyAV	CCTTC	6 cut(s)	317, 497, 781, 889, 946, 989
HpyCH4III	ACNGT	3 cut(s)	357, 518, 854
HpyCH4IV	ACGT	2 cut(s)	41, 650
HpyCH4V	TGCA	4 cut(s)	180, 215, 353, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 257
HpyF3I	CTNAG	6 cut(s)	75, 261, 287, 605, 634, 972
HpySE526I	ACGT	2 cut(s)	41, 650
Hsp92II	CATG	4 cut(s)	583, 598, 659, 985
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	78, 190, 506
LmnI	GCTCC	3 cut(s)	32, 111, 956
Lsp1109I	GCAGC	3 cut(s)	270, 313, 335
LweI	GCATC	2 cut(s)	495, 600
MaeI	CTAG	4 cut(s)	132, 153, 1002, 1019
MaeII	ACGT	2 cut(s)	41, 650
MaeIII	GTNAC	1 cut(s)	898
MalI	GATC	3 cut(s)	80, 192, 508
MboI	GATC	3 cut(s)	78, 190, 506
MboII	GAAGA	4 cut(s)	61, 310, 837, 917
MfeI	CAATTG	1 cut(s)	704
MflI	RGATCY	2 cut(s)	78, 506
MhlI	GDGCHC	1 cut(s)	1057
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	8 cut(s)	207, 225, 348, 418, 468, 704, 908, 1073
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	906
Mox20I	TGGCCA	1 cut(s)	255
MroXI	GAANNNNTTC	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	3 cut(s)	99, 924, 947
MslI	CAYNNNNRTG	1 cut(s)	834
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	704
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	137, 257
NdeII	GATC	3 cut(s)	78, 190, 506
NlaIII	CATG	4 cut(s)	583, 598, 659, 985
NlaIV	GGNNCC	2 cut(s)	113, 1056
NmuCI	GTSAC	1 cut(s)	898
NspI	RCATGY	1 cut(s)	985
PctI	GAATGC	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	125, 1034
PflMI	CCANNNNNTGG	1 cut(s)	893
PkrI	GCNGC	3 cut(s)	285, 325, 328
PleI	GAGTC	1 cut(s)	905
PpsI	GAGTC	1 cut(s)	905
PshBI	ATTAAT	1 cut(s)	924
PsiI	TTATAA	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	113, 1056
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	78, 506
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	40, 588
RsaNI	GTAC	2 cut(s)	39, 587
RseI	CAYNNNNRTG	1 cut(s)	834
SalI	GTCGAC	1 cut(s)	659
SaqAI	TTAA	3 cut(s)	99, 924, 947
SatI	GCNGC	3 cut(s)	284, 324, 327
Sau3AI	GATC	3 cut(s)	78, 190, 506
SchI	GAGTC	1 cut(s)	906
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	1057
SfaNI	GCATC	2 cut(s)	495, 600
SfcI	CTRYAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	834
SmlI	CTYRAG	3 cut(s)	200, 535, 748
SmoI	CTYRAG	3 cut(s)	200, 535, 748
Sse9I	AATT	8 cut(s)	207, 225, 348, 418, 468, 704, 908, 1073
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	4 cut(s)	132, 153, 1002, 1019
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	3 cut(s)	357, 518, 854
TaiI	ACGT	2 cut(s)	44, 653
TaqI	TCGA	3 cut(s)	424, 660, 1032
TasI	AATT	8 cut(s)	207, 225, 348, 418, 468, 704, 908, 1073
TatI	WGTACW	1 cut(s)	586
TfiI	GAWTC	2 cut(s)	125, 1034
Tru1I	TTAA	3 cut(s)	99, 924, 947
Tru9I	TTAA	3 cut(s)	99, 924, 947
TscAI	CASTG	5 cut(s)	282, 360, 642, 801, 859
TseFI	GTSAC	1 cut(s)	898
TseI	GCWGC	3 cut(s)	283, 323, 326
Tsp45I	GTSAC	1 cut(s)	898
TspDTI	ATGAA	5 cut(s)	527, 559, 583, 901, 981
TspRI	CASTG	5 cut(s)	282, 360, 642, 801, 859
Van91I	CCANNNNNTGG	1 cut(s)	893
VspI	ATTAAT	1 cut(s)	924
XapI	RAATTY	2 cut(s)	908, 1073
XbaI	TCTAGA	1 cut(s)	1018
XceI	RCATGY	1 cut(s)	985
XmiI	GTMKAC	1 cut(s)	660
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	4 cut(s)	132, 153, 1002, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.