Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011989

Physical Location & Seq

Genomic Coordinates Reverse (-)

5558217 .. 5561046

Gene Structure 2830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAACCAATTCATGCAGGTTGATTTCTCACTTAAGCTTCTCAAAGCAGGGAAGAATGTCCTTCAAGCTACAAGTGAATTGGAAACTGCAGTGTCAAGTTATAAATCTATTGTTGCTAATACTCCCAATAAACCAATCTGGGCTGTAGCAGAAAATTATCGATTTGAACCCGCTTTTGTTGAGGGCAAGAAACTAATGACTGAAATAGGAGATGTGATGAGCATCCAAGTTATTGTTGAAGGATCAATGAACAGTTCAAACCCTTACTTCTCAAGCTCTTGGAGGCGAGACTTTAATATAGTTTGGCGATTTGTTGGCTTGAAGGGAACACTGGAAGTTGAGCGTGGAAACCAAGATGGACGACACGGCTATGTGGTCACATTTTATAGTGCTGATGGACAAAGGAAAAGCTCCTTCTACCAATTTAGAGGAGTGACTGAAGAATTCATTGCTTTTATTAATGACATAAAGCAAGCCACTTTAAAGAAGGGAGCTGGCTATGAAGCTGAGCCTCGCATGTCGTTACTGGAAGGTGTTAGAGATGTTGCTGTTCTAGAGGCAATGCTCGAATCTGGAGGAAGGCAAGGGGCACCAGTCCATGTGAAGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0016491 GO:0019362 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

204

Amino Acids

22.88

Weight (kDa)

8.71

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20790
fragaria_vesca	FvH4_3g43551 FvH4_3g43551
malus_domestica	MD11G1022800.v1.1
prunus_persica	Prupe.6G018500_v2.0.a1
pyrus_communis	pycom11g01860
rosa_chinensis	RchiOBHm_Chr5g0078111
rosa_laevigata	RLG00000031428 RLG00000036752
rosa_multiflora	Rmu_sc0019972.1_g000004
rosa_roxburghii	Rroxscaffold_1G00000370 Rroxscaffold_1G00004110
rosa_rugosa	Rorug05G0458500 Rorug05G0458600
rosa_samantha	Rh5AG052300 Rh5AG513200 Rh5CG559000 Rh5DG119600
rosa_wichuraiana	Rw5G047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	7
AccB1I	GGYRCC	1 cut(s)	589
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	443, 608
AcuI	CTGAAG	1 cut(s)	459
AflII	CTTAAG	1 cut(s)	32
AgsI	TTSAA	5 cut(s)	65, 167, 239, 258, 322
AluBI	AGCT	6 cut(s)	37, 68, 276, 411, 494, 506
AluI	AGCT	6 cut(s)	37, 68, 276, 411, 494, 506
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	250
ApoI	RAATTY	2 cut(s)	443, 608
AseI	ATTAAT	1 cut(s)	459
Asp700I	GAANNNNTTC	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	592
BanI	GGYRCC	1 cut(s)	589
BccI	CCATC	2 cut(s)	350, 389
BceAI	ACGGC	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	2 cut(s)	87, 144
BfrI	CTTAAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	7
BlpI	GCTNAGC	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	591
BmsI	GCATC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	221
Bse1I	ACTGG	3 cut(s)	336, 531, 593
Bse3DI	GCAATG	2 cut(s)	447, 567
Bse8I	GATNNNNATC	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	160
BseGI	GGATG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	221
BseMI	GCAATG	2 cut(s)	447, 567
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	3 cut(s)	336, 531, 593
BseRI	GAGGAG	1 cut(s)	444
BseSI	GKGCMC	1 cut(s)	592
BshNI	GGYRCC	1 cut(s)	589
BshVI	ATCGAT	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp143I	GATC	1 cut(s)	242
Bsp1720I	GCTNAGC	1 cut(s)	507
BspACI	CCGC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	499
BspDI	ATCGAT	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	591
BspMAI	CTGCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	589
BspTI	CTTAAG	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	447, 567
BsrI	ACTGG	3 cut(s)	336, 531, 593
BssMI	GATC	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	254
BstAFI	CTTAAG	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	474, 496
BstDEI	CTNAG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	245
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	520
BstSFI	CTRYAG	2 cut(s)	87, 144
BstSLI	GKGCMC	1 cut(s)	592
Bsu15I	ATCGAT	1 cut(s)	160
BsuTUI	ATCGAT	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	96, 329
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	2 cut(s)	474, 496
ClaI	ATCGAT	1 cut(s)	160
CviAII	CATG	3 cut(s)	13, 517, 599
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
DraI	TTTAAA	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	443
FaeI	CATG	3 cut(s)	16, 520, 602
FaiI	YATR	9 cut(s)	14, 102, 299, 372, 387, 467, 501, 518, 600
FatI	CATG	3 cut(s)	12, 516, 598
FauI	CCCGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	209
FspBI	CTAG	1 cut(s)	554
GsuI	CTGGAG	1 cut(s)	594
Hin1II	CATG	3 cut(s)	16, 520, 602
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	569
Hpy188III	TCNNGA	2 cut(s)	554, 573
HpyAV	CCTTC	7 cut(s)	71, 233, 316, 424, 481, 524, 573
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	16, 89
HpyF3I	CTNAG	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	16, 520, 602
Kzo9I	GATC	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	416, 491
LpnPI	CCDG	8 cut(s)	2, 33, 124, 317, 480, 512, 558, 606
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	554
MaeIII	GTNAC	3 cut(s)	376, 433, 522
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	2 cut(s)	64, 452
MhlI	GDGCHC	1 cut(s)	592
MluCI	AATT	6 cut(s)	8, 77, 154, 422, 443, 608
MnlI	CCTC	6 cut(s)	175, 276, 422, 522, 550, 569
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	33, 294, 459, 482
MslI	CAYNNNNRTG	1 cut(s)	369
MspCI	CTTAAG	1 cut(s)	32
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	3 cut(s)	16, 520, 602
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	2 cut(s)	376, 433
NspI	RCATGY	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	569
PshBI	ATTAAT	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	591
PstI	CTGCAG	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	4 cut(s)	33, 294, 459, 482
Sau3AI	GATC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	592
SetI	ASST	8 cut(s)	21, 39, 70, 278, 413, 496, 508, 535
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	2 cut(s)	87, 144
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	32, 271
SmoI	CTYRAG	2 cut(s)	32, 271
Sse9I	AATT	6 cut(s)	8, 77, 154, 422, 443, 608
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	554
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	160, 567
TasI	AATT	6 cut(s)	8, 77, 154, 422, 443, 608
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	4 cut(s)	33, 294, 459, 482
Tru9I	TTAA	4 cut(s)	33, 294, 459, 482
TscAI	CASTG	2 cut(s)	96, 336
TseFI	GTSAC	2 cut(s)	376, 433
Tsp45I	GTSAC	2 cut(s)	376, 433
TspDTI	ATGAA	4 cut(s)	17, 263, 436, 516
TspRI	CASTG	2 cut(s)	96, 336
Vha464I	CTTAAG	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	459
XapI	RAATTY	2 cut(s)	443, 608
XbaI	TCTAGA	1 cut(s)	553
XceI	RCATGY	1 cut(s)	520
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.