Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011989

Physical Location & Seq

Genomic Coordinates Reverse (-)

1352697 .. 1357485

Gene Structure 4789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGAGAGGCACCCCAGATTGCCATTCTTGGAGCTGGTACCTTTATGAGGACCCAATACATTCCTAGGCTCGCTGAGATCTCTAAGCTCCTCCTTCTTAAATCCATTTGGAGCCGTACAGAGGAATCTGCAAGAGGTGCCGTTGAGATTGCTCAAAAACATTTTCCAGGAGTAGAATGCAAATGGGGTGATAAGGGTCTTCAAGAAATTATTGAAGATAGTTCAATTCTTGGTGTTGCAGTGGTTTTAGCTGGCCAAGCTCAGGTTGATTTCTCATTGAGGCTGCTCAAGGCAGGGAAGCATGTCCTTCAAGAAAAACCTGCGGCAGCTTCTACAAGCGAATTGGAAACTGCACTGTCAAGTTATAGGTCAATTTTTGCCAATATCCCTGATAAACCAATTTGGGCCGTAGCAGAAAATTATAGATTCGAACCTGCTTTCGTTGAGGGCAAGAAACTAGTGAATGATATTGGAGATGTGATGAGCATCCAAGTTCTTGTTGAAGGATCAATGAACAGTTCAAACCCTTACTTCTCAAGCTCCTGGAGGCGCAATTTTACTGGAGGTTTCATTCTGGACATGGGAGTACATTTCGTTGCTGGACTGAGGATGCTTGCTGGATGTGAGCTAGTATCTGTGTCAGCTATAACCTCTCATGTTGACAAGACCTTACCTGCACCAGATAACGTATCCTCTCTCTTTCAACTGGAGAATGGATGTTCAGGGGTTTTTGTGATGGTAGTCTCCTCAAGATCACCAAAGATAGTTTGGCGATTTGTTGGCTTGAAGGGAACGCTGCAAATTGAGCGTGGAAACCAAGATGGACGACATGGCTACCTGGTTTTATTTTATGGTTCTGATGGACAAAGCAAAAGCTCCTTCTACCAATTTAGCGGAGTGGATGAAGAATTCAAAGCTTTTATTAATGACATATCACAGGCCAATCTAAGGAAGGGGACTGGCTATGAAGCCGAGCCTCGCATGTCTTTCTTGGAAGGTGCCAGAGACGTTGCTGTTCTAGAGGCAATGCTTGAATCTGGAGGAAAGCAAGGGGCACCAGTTCATGTGAAAAAATATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0016491 GO:0019362 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

361

Amino Acids

39.34

Weight (kDa)

6.41

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20790
fragaria_vesca	FvH4_3g43551 FvH4_3g43551
malus_domestica	MD11G1022800.v1.1
prunus_persica	Prupe.6G018500_v2.0.a1
pyrus_communis	pycom11g01860
rosa_chinensis	RchiOBHm_Chr5g0078111
rosa_laevigata	RLG00000031428 RLG00000036752
rosa_multiflora	Rmu_sc0019972.1_g000004
rosa_roxburghii	Rroxscaffold_1G00000370 Rroxscaffold_1G00004110
rosa_rugosa	Rorug05G0458500 Rorug05G0458600
rosa_samantha	Rh5AG052300 Rh5AG513200 Rh5CG559000 Rh5DG119600
rosa_wichuraiana	Rw5G047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	328, 442, 682
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	5 cut(s)	10, 38, 137, 998, 1054
AciI	CCGC	2 cut(s)	323, 894
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	908
AfaI	GTAC	3 cut(s)	40, 118, 588
AfiI	CCNNNNNNNGG	4 cut(s)	48, 121, 262, 948
AhlI	ACTAGT	1 cut(s)	457
AjnI	CCWGG	3 cut(s)	166, 542, 837
Alw26I	GTCTC	2 cut(s)	748, 999
AlwI	GGATC	1 cut(s)	514
AoxI	GGCC	3 cut(s)	253, 405, 939
ApeKI	GCWGC	3 cut(s)	283, 326, 796
ApoI	RAATTY	1 cut(s)	908
AseI	ATTAAT	1 cut(s)	924
Asp718I	GGTACC	1 cut(s)	38
AspA2I	CCTAGG	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	2 cut(s)	51, 405
AsuHPI	GGTGA	2 cut(s)	200, 747
AsuII	TTCGAA	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	51
AvrII	CCTAGG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	1057
BalI	TGGCCA	1 cut(s)	255
BanI	GGYRCC	5 cut(s)	10, 38, 137, 998, 1054
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	270, 338, 783
BccI	CCATC	3 cut(s)	730, 815, 854
BceAI	ACGGC	3 cut(s)	99, 125, 392
BciT130I	CCWGG	3 cut(s)	168, 544, 839
BciVI	GTATCC	1 cut(s)	700
BcoDI	GTCTC	2 cut(s)	748, 999
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	4 cut(s)	66, 458, 629, 1019
BfuAI	ACCTGC	3 cut(s)	328, 442, 682
BfuI	GTATCC	1 cut(s)	700
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	4 cut(s)	284, 324, 327, 797
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	4 cut(s)	285, 325, 328, 798
Bme1390I	CCNGG	3 cut(s)	168, 544, 839
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	2 cut(s)	51, 405
BmiI	GGNNCC	7 cut(s)	12, 40, 53, 113, 139, 1000, 1056
BmrFI	CCNGG	3 cut(s)	168, 544, 839
BmsI	GCATC	2 cut(s)	495, 600
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	4 cut(s)	565, 582, 728, 1059
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	429
BpuEI	CTTGAG	3 cut(s)	272, 520, 733
BsaBI	GATNNNNATC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 121, 262, 948
Bse1I	ACTGG	4 cut(s)	565, 711, 964, 1058
Bse3DI	GCAATG	1 cut(s)	1032
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	3 cut(s)	168, 544, 839
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	5 cut(s)	486, 615, 626, 722, 907
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	4 cut(s)	48, 121, 262, 948
BseMI	GCAATG	1 cut(s)	1032
BseMII	CTCAG	3 cut(s)	66, 275, 596
BseNI	ACTGG	4 cut(s)	565, 711, 964, 1058
BseRI	GAGGAG	2 cut(s)	80, 736
BseSI	GKGCMC	1 cut(s)	1057
BseXI	GCAGC	3 cut(s)	270, 338, 783
BsgI	GTGCAG	2 cut(s)	336, 660
BshFI	GGCC	3 cut(s)	255, 407, 941
BshNI	GGYRCC	5 cut(s)	10, 38, 137, 998, 1054
BslFI	GGGAC	1 cut(s)	970
BslI	CCNNNNNNNGG	4 cut(s)	48, 121, 262, 948
BsmAI	GTCTC	2 cut(s)	748, 999
BsmBI	CGTCTC	1 cut(s)	999
BsmFI	GGGAC	1 cut(s)	970
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	255, 407, 941
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	1057
Bsp143I	GATC	3 cut(s)	78, 506, 752
BspACI	CCGC	2 cut(s)	323, 894
BspANI	GGCC	3 cut(s)	255, 407, 941
BspCNI	CTCAG	3 cut(s)	67, 274, 597
BspLI	GGNNCC	7 cut(s)	12, 40, 53, 113, 139, 1000, 1056
BspMI	ACCTGC	3 cut(s)	328, 442, 682
BspPI	GGATC	1 cut(s)	514
BspT104I	TTCGAA	1 cut(s)	429
BspT107I	GGYRCC	5 cut(s)	10, 38, 137, 998, 1054
BsrDI	GCAATG	1 cut(s)	1032
BsrI	ACTGG	4 cut(s)	565, 711, 964, 1058
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	3 cut(s)	78, 506, 752
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	3 cut(s)	168, 544, 839
Bst4CI	ACNGT	2 cut(s)	357, 518
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	72, 253, 615
BstDEI	CTNAG	5 cut(s)	75, 84, 261, 605, 947
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstF5I	GGATG	5 cut(s)	486, 615, 626, 722, 907
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	3 cut(s)	81, 509, 755
BstMAI	GTCTC	2 cut(s)	748, 999
BstMBI	GATC	3 cut(s)	78, 506, 752
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 257, 805
BstNI	CCWGG	3 cut(s)	168, 544, 839
BstNSI	RCATGY	2 cut(s)	305, 985
BstSCI	CCNGG	3 cut(s)	166, 542, 837
BstSLI	GKGCMC	1 cut(s)	1057
BstV1I	GCAGC	3 cut(s)	270, 338, 783
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	3 cut(s)	255, 407, 941
BtsCI	GGATG	5 cut(s)	486, 615, 626, 722, 907
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	246, 353, 1078
BveI	ACCTGC	3 cut(s)	328, 442, 682
Cac8I	GCNNGC	3 cut(s)	72, 253, 615
CfoI	GCGC	1 cut(s)	552
Cfr13I	GGNCC	2 cut(s)	51, 405
CsiI	ACCWGGT	1 cut(s)	837
Csp6I	GTAC	3 cut(s)	39, 117, 587
CviAII	CATG	6 cut(s)	302, 580, 656, 830, 982, 1064
CviQI	GTAC	3 cut(s)	39, 117, 587
DdeI	CTNAG	5 cut(s)	75, 84, 261, 605, 947
DpnI	GATC	3 cut(s)	80, 508, 754
DpnII	GATC	3 cut(s)	78, 506, 752
EaeI	YGGCCR	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	908
EcoRII	CCWGG	3 cut(s)	166, 542, 837
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	999
FaeI	CATG	6 cut(s)	305, 583, 659, 833, 985, 1067
FaqI	GGGAC	1 cut(s)	970
FatI	CATG	6 cut(s)	301, 579, 655, 829, 981, 1063
Fnu4HI	GCNGC	4 cut(s)	284, 324, 327, 797
FokI	GGATG	5 cut(s)	473, 622, 633, 729, 914
Fsp4HI	GCNGC	4 cut(s)	284, 324, 327, 797
FspBI	CTAG	4 cut(s)	66, 458, 629, 1019
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	4 cut(s)	284, 324, 327, 797
GsuI	CTGGAG	4 cut(s)	565, 582, 728, 1059
HaeIII	GGCC	3 cut(s)	255, 407, 941
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	6 cut(s)	305, 583, 659, 833, 985, 1067
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	915
HinfI	GANTC	3 cut(s)	125, 426, 1034
HphI	GGTGA	2 cut(s)	200, 747
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	1 cut(s)	859
Hpy188III	TCNNGA	6 cut(s)	203, 311, 575, 750, 1019, 1038
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	7 cut(s)	104, 317, 497, 781, 889, 946, 989
HpyCH4III	ACNGT	2 cut(s)	357, 518
HpyCH4IV	ACGT	2 cut(s)	687, 1008
HpyCH4V	TGCA	6 cut(s)	131, 180, 239, 353, 677, 799
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 257, 805
HpyF3I	CTNAG	5 cut(s)	75, 84, 261, 605, 947
HpySE526I	ACGT	2 cut(s)	687, 1008
Hsp92II	CATG	6 cut(s)	305, 583, 659, 833, 985, 1067
HspAI	GCGC	1 cut(s)	550
KpnI	GGTACC	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	78, 506, 752
LmnI	GCTCC	5 cut(s)	32, 93, 111, 545, 881
Lsp1109I	GCAGC	3 cut(s)	270, 338, 783
LweI	GCATC	2 cut(s)	495, 600
MabI	ACCWGGT	1 cut(s)	837
MaeI	CTAG	4 cut(s)	66, 458, 629, 1019
MaeII	ACGT	2 cut(s)	687, 1008
MalI	GATC	3 cut(s)	80, 508, 754
MboI	GATC	3 cut(s)	78, 506, 752
MboII	GAAGA	3 cut(s)	191, 227, 917
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	1057
MlsI	TGGCCA	1 cut(s)	255
MluNI	TGGCCA	1 cut(s)	255
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	2 cut(s)	99, 924
Msp20I	TGGCCA	1 cut(s)	255
MspR9I	CCNGG	3 cut(s)	168, 544, 839
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	3 cut(s)	168, 544, 839
MwoI	GCNNNNNNNGC	3 cut(s)	137, 257, 805
NdeII	GATC	3 cut(s)	78, 506, 752
NlaIII	CATG	6 cut(s)	305, 583, 659, 833, 985, 1067
NlaIV	GGNNCC	7 cut(s)	12, 40, 53, 113, 139, 1000, 1056
NmeAIII	GCCGAG	1 cut(s)	997
NspI	RCATGY	2 cut(s)	305, 985
NspV	TTCGAA	1 cut(s)	429
PctI	GAATGC	1 cut(s)	182
PfeI	GAWTC	3 cut(s)	125, 426, 1034
PfoI	TCCNGGA	2 cut(s)	166, 542
PkrI	GCNGC	4 cut(s)	285, 325, 328, 798
PpuMI	RGGWCCY	1 cut(s)	51
PshBI	ATTAAT	1 cut(s)	924
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	166, 542, 837
PspGI	CCWGG	3 cut(s)	166, 542, 837
PspN4I	GGNNCC	7 cut(s)	12, 40, 53, 113, 139, 1000, 1056
PspPI	GGNCC	2 cut(s)	51, 405
PspPPI	RGGWCCY	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	3 cut(s)	40, 118, 588
RsaNI	GTAC	3 cut(s)	39, 117, 587
SaqAI	TTAA	2 cut(s)	99, 924
SatI	GCNGC	4 cut(s)	284, 324, 327, 797
Sau3AI	GATC	3 cut(s)	78, 506, 752
Sau96I	GGNCC	2 cut(s)	51, 405
ScrFI	CCNGG	3 cut(s)	168, 544, 839
SduI	GDGCHC	1 cut(s)	1057
SexAI	ACCWGGT	1 cut(s)	837
SfaNI	GCATC	2 cut(s)	495, 600
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	3 cut(s)	287, 535, 748
SmoI	CTYRAG	3 cut(s)	287, 535, 748
SpeI	ACTAGT	1 cut(s)	457
SsiI	CCGC	2 cut(s)	323, 894
SspMI	CTAG	4 cut(s)	66, 458, 629, 1019
StyD4I	CCNGG	3 cut(s)	166, 542, 837
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	357, 518
TaiI	ACGT	2 cut(s)	690, 1011
TaqI	TCGA	1 cut(s)	429
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	3 cut(s)	125, 426, 1034
Tru1I	TTAA	2 cut(s)	99, 924
Tru9I	TTAA	2 cut(s)	99, 924
TscAI	CASTG	2 cut(s)	246, 360
TseI	GCWGC	3 cut(s)	283, 326, 796
TspDTI	ATGAA	5 cut(s)	527, 559, 918, 981, 1052
TspRI	CASTG	2 cut(s)	246, 360
VpaK11BI	GGWCC	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	924
XagI	CCTNNNNNAGG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	908
XbaI	TCTAGA	1 cut(s)	1018
XceI	RCATGY	2 cut(s)	305, 985
XcmI	CCANNNNNNNNNTGG	1 cut(s)	765
XmaJI	CCTAGG	1 cut(s)	65
XspI	CTAG	4 cut(s)	66, 458, 629, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.