Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011989

Physical Location & Seq

Genomic Coordinates Forward (+)

63151883 .. 63153628

Gene Structure 1746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0458500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGTCGAATCTAAACCCAGCATTTGCCTACACGGTGGTGTACGTGAAGGACGTAGCCAAATCCGCAGCCTTCTATTCCAAAGCCTTCGGCTACACCGTACGTCGTATAGACGAGTCTCACAGATGGGGAGAGCTTGAAAGCGGGCAGACGACGATAGCATTCACGCCGCAAAACCAGCACGAGACGGACGACCTCACCGGAAAAGTTCAGAAGCCGAGCTCCGGGAGTGAGAGGCAGCCGGTTGAGGTTTGCTTTGCGTACCCCGACGTCGACGCGGCCTATAAAAGGGCGGTGGAGAACGGAGCGGTGGCGGTGAGCGTGCCGGAAGAGAAAGAGTGGGGCCAGAAAGTGGGGTATGTACGAGATCCCGATGGGATCGTGGTGAGGATGGGAAGCTACGTCAACGAATCGAAGCAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

141

Amino Acids

15.56

Weight (kDa)

5.41

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	9 - 129	2.6e-14	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_2	PF12681	9 - 133	7.6e-10	Glyoxalase-like domain
Glyoxalase_6	PF18029	13 - 126	2e-11	Glyoxalase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20790
fragaria_vesca	FvH4_3g43551 FvH4_3g43551
malus_domestica	MD11G1022800.v1.1
prunus_persica	Prupe.6G018500_v2.0.a1
pyrus_communis	pycom11g01860
rosa_chinensis	RchiOBHm_Chr5g0078111
rosa_laevigata	RLG00000031428 RLG00000036752
rosa_multiflora	Rmu_sc0019972.1_g000004
rosa_roxburghii	Rroxscaffold_1G00000370 Rroxscaffold_1G00004110
rosa_rugosa	Rorug05G0458500 Rorug05G0458600
rosa_samantha	Rh5AG052300 Rh5AG513200 Rh5CG559000 Rh5DG119600
rosa_wichuraiana	Rw5G047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
AccB7I	CCANNNNNTGG	1 cut(s)	352
AccBSI	CCGCTC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	278
AciI	CCGC	7 cut(s)	66, 144, 170, 278, 293, 308, 314
AclWI	GGATC	2 cut(s)	362, 386
AcyI	GRCGYC	2 cut(s)	5, 270
AfaI	GTAC	4 cut(s)	44, 102, 263, 363
AfiI	CCNNNNNNNGG	3 cut(s)	224, 288, 352
AgsI	TTSAA	1 cut(s)	140
AleI	CACNNNNGTG	1 cut(s)	38
AluBI	AGCT	3 cut(s)	136, 222, 399
AluI	AGCT	3 cut(s)	136, 222, 399
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	123, 179
AlwI	GGATC	2 cut(s)	362, 386
AoxI	GGCC	2 cut(s)	279, 343
ApeKI	GCWGC	2 cut(s)	68, 238
AspS9I	GGNCC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	3 cut(s)	190, 328, 397
BanII	GRGCYC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	80, 250
BccI	CCATC	3 cut(s)	120, 368, 385
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	123, 179
BisI	GCNGC	4 cut(s)	69, 170, 239, 279
BlsI	GCNGC	4 cut(s)	70, 171, 240, 280
Bme1390I	CCNGG	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	226
BsaAI	YACGTR	1 cut(s)	46
BsaHI	GRCGYC	2 cut(s)	5, 270
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 288, 352
Bse118I	RCCGGY	1 cut(s)	241
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	3 cut(s)	224, 288, 352
BseXI	GCAGC	2 cut(s)	80, 250
BseYI	CCCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	2 cut(s)	281, 345
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	4 cut(s)	201, 225, 242, 326
BsiWI	CGTACG	1 cut(s)	100
BslI	CCNNNNNNNGG	3 cut(s)	224, 288, 352
BsmAI	GTCTC	2 cut(s)	123, 179
BsmBI	CGTCTC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	281, 345
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	367, 378
BspACI	CCGC	7 cut(s)	66, 144, 170, 278, 293, 308, 314
BspANI	GGCC	2 cut(s)	281, 345
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	362, 386
BsrBI	CCGCTC	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssMI	GATC	2 cut(s)	367, 378
BssNI	GRCGYC	2 cut(s)	5, 270
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	37, 100
Bst6I	CTCTTC	1 cut(s)	324
BstACI	GRCGYC	2 cut(s)	5, 270
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	146, 323
BstENI	CCTNNNNNAGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	278
BstKTI	GATC	2 cut(s)	370, 381
BstMAI	GTCTC	2 cut(s)	123, 179
BstMBI	GATC	2 cut(s)	367, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 178
BstSCI	CCNGG	1 cut(s)	224
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	80, 250
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	281, 345
BtsCI	GGATG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	146, 323
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	343
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	4 cut(s)	43, 101, 262, 362
CviQI	GTAC	4 cut(s)	43, 101, 262, 362
DpnI	GATC	2 cut(s)	369, 380
DpnII	GATC	2 cut(s)	367, 378
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	179
FaiI	YATR	3 cut(s)	110, 285, 360
FauI	CCCGC	1 cut(s)	137
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	69, 170, 239, 279
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	4 cut(s)	69, 170, 239, 279
GluI	GCNGC	4 cut(s)	69, 170, 239, 279
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	281, 345
HapII	CCGG	4 cut(s)	201, 225, 242, 326
HgaI	GACGC	1 cut(s)	284
Hin1I	GRCGYC	2 cut(s)	5, 270
HincII	GTYRAC	2 cut(s)	274, 406
HindII	GTYRAC	2 cut(s)	274, 406
HinfI	GANTC	3 cut(s)	10, 116, 410
HpaII	CCGG	4 cut(s)	201, 225, 242, 326
HphI	GGTGA	3 cut(s)	190, 328, 397
Hpy166II	GTNNAC	3 cut(s)	43, 274, 406
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	3 cut(s)	43, 274, 406
Hpy99I	CGWCG	6 cut(s)	10, 108, 157, 272, 275, 278
HpyAV	CCTTC	3 cut(s)	43, 82, 97
HpyCH4III	ACNGT	2 cut(s)	37, 100
HpyCH4IV	ACGT	5 cut(s)	45, 54, 103, 270, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 178
HpySE526I	ACGT	5 cut(s)	45, 54, 103, 270, 402
Hsp92I	GRCGYC	2 cut(s)	5, 270
Kzo9I	GATC	2 cut(s)	367, 378
LmnI	GCTCC	2 cut(s)	227, 305
LpnPI	CCDG	8 cut(s)	33, 191, 214, 238, 255, 339, 359, 404
Lsp1109I	GCAGC	2 cut(s)	80, 250
MaeII	ACGT	5 cut(s)	45, 54, 103, 270, 402
MalI	GATC	2 cut(s)	369, 380
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	2 cut(s)	367, 378
MboII	GAAGA	1 cut(s)	341
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	206, 228, 241, 381
MseI	TTAA	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	4 cut(s)	201, 225, 242, 326
MspR9I	CCNGG	1 cut(s)	226
Mva1269I	GAATGC	1 cut(s)	161
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	65, 178
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	367, 378
NlaIV	GGNNCC	1 cut(s)	344
NmeAIII	GCCGAG	1 cut(s)	243
OliI	CACNNNNGTG	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 96, 189
PctI	GAATGC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	10, 410
Pfl23II	CGTACG	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	352
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	4 cut(s)	70, 171, 240, 280
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	19
PspLI	CGTACG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	4 cut(s)	44, 102, 263, 363
RsaNI	GTAC	4 cut(s)	43, 101, 262, 362
RseI	CAYNNNNRTG	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	224
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	4 cut(s)	69, 170, 239, 279
Sau3AI	GATC	2 cut(s)	367, 378
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	224
SgrDI	CGTCGACG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	38
SsiI	CCGC	7 cut(s)	66, 144, 170, 278, 293, 308, 314
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	37, 100
TaiI	ACGT	5 cut(s)	48, 57, 106, 273, 405
TaqI	TCGA	3 cut(s)	8, 273, 413
TauI	GCSGC	2 cut(s)	172, 281
TfiI	GAWTC	2 cut(s)	10, 410
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TseI	GCWGC	2 cut(s)	68, 238
TspGWI	ACGGA	2 cut(s)	203, 318
Van91I	CCANNNNNTGG	1 cut(s)	352
XagI	CCTNNNNNAGG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	273
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.