Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011989

Physical Location & Seq

Genomic Coordinates Forward (+)

630141 .. 633857

Gene Structure 3717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCAGAAGCACCCCAGATTGCCATTCTTGGAGCTGGTACTTTTGTGAAGACCCAATACATTCCAAGGCTGGCTGAGATCTCTAACCTTGTCAATCTTAAAGCCATTTGGAGCCGTTCTGAGGAATCTGCTAGAGGTGCAGTTGAGATTGCTGGGAAACATTTTCCAGGAGTAGAATGCAAATGGGGTGATCATGGTCTTGAGGAAATTATTGCAGATAGTTCAATTCTTGGTGTTGCTGTGGTTTTAGCTGGCCAAGCTCAGGTTGATTTCTCACTTAAGCTTCTCAAAGCAGGGAAGAATGTCCTTCAAGCTACAAGTGAATTGGAAACTGCAGTGTCAAGTTATAAATCTGTTGTTGCTAATACTCCCAATAAACCAATCTGGGCTGTAGCAGAAAATTATCGATTTGAACCTGCTTTTGTTGAGGGCAAGAAACTAATGACTGAAATTGGAGATGTGATGAGCATCCAAGTTATTGTTGAAGGATCAATGAACAGTTCAAACCCTTACTTCTCAAGCTCTTGGAGGCGAGACTTTAATGGTGGTTTCATTCTGGACATGGGAGTACATTTCGTTGCAGGACTGAGGATGCTTGCTGGATGTGAGATAGTCTCGGTGTCAGCTACAACGTCTCATGTCGACAAGACTTTACCTCCCCAGATAACATATCCTCTCTCTTTTTGGCGATTTGTTGGCTTGAAGGGAACACTGGAAGTTGAGCGTGGAAACCAAGATGGACGACATGGCTATGTGGTCACATTTTATAGTGCTGATGGACAAAGGAAAAGCTCCTTCCACCAATTTAGAGGAGTGACTGAAGAATTCATTGCTTTTATTAATGACATAAAGCAAGCCACTTTAAAGAAGGGAGCTGGCTATGAAGCTGAGCCTCGCATGTCGTTTCTGGAAGGTGCTAGAGATGTTGCTGTTCTAGAGGCAATGCTCGAATCTGGAGGAAGGCAAGGGGCACCAGTCCATGTGAAGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0016491 GO:0019362 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

331

Amino Acids

36.1

Weight (kDa)

6.41

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GFO_IDH_MocA	PF01408	7 - 104	9.6e-06	Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3	PF22725	150 - 247	1.5e-08	GFO/IDH/MocA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20790
fragaria_vesca	FvH4_3g43551 FvH4_3g43551
malus_domestica	MD11G1022800.v1.1
prunus_persica	Prupe.6G018500_v2.0.a1
pyrus_communis	pycom11g01860
rosa_chinensis	RchiOBHm_Chr5g0078111
rosa_laevigata	RLG00000031428 RLG00000036752
rosa_multiflora	Rmu_sc0019972.1_g000004
rosa_roxburghii	Rroxscaffold_1G00000370 Rroxscaffold_1G00004110
rosa_rugosa	Rorug05G0458500 Rorug05G0458600
rosa_samantha	Rh5AG052300 Rh5AG513200 Rh5CG559000 Rh5DG119600
rosa_wichuraiana	Rw5G047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
Acc36I	ACCTGC	1 cut(s)	424
AccB1I	GGYRCC	1 cut(s)	970
AccI	GTMKAC	1 cut(s)	642
AclWI	GGATC	1 cut(s)	496
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	824, 989
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	2 cut(s)	40, 570
AfiI	CCNNNNNNNGG	2 cut(s)	121, 262
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	6 cut(s)	225, 311, 413, 485, 504, 703
AjnI	CCWGG	1 cut(s)	166
Alw26I	GTCTC	3 cut(s)	528, 619, 639
AlwI	GGATC	1 cut(s)	496
AoxI	GGCC	1 cut(s)	253
ApoI	RAATTY	2 cut(s)	824, 989
AseI	ATTAAT	1 cut(s)	840
AsuHPI	GGTGA	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	973
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BalI	TGGCCA	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	970
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BbsI	GAAGAC	1 cut(s)	56
BccI	CCATC	2 cut(s)	731, 770
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	168
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	3 cut(s)	528, 619, 639
BfaI	CTAG	3 cut(s)	132, 918, 935
BfmI	CTRYAG	2 cut(s)	333, 390
BfrI	CTTAAG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	78
BlpI	GCTNAGC	1 cut(s)	888
Bme1390I	CCNGG	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	113, 972
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	477, 582
BpiI	GAAGAC	1 cut(s)	56
BplI	GAGNNNNNCTC	2 cut(s)	599, 631
BpmI	CTGGAG	1 cut(s)	975
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	888
BpuEI	CTTGAG	2 cut(s)	221, 502
Bsa29I	ATCGAT	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 262
Bse1I	ACTGG	2 cut(s)	717, 974
Bse3DI	GCAATG	2 cut(s)	828, 948
Bse8I	GATNNNNATC	1 cut(s)	467
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	406
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	3 cut(s)	468, 597, 608
BseJI	GATNNNNATC	1 cut(s)	467
BseLI	CCNNNNNNNGG	2 cut(s)	121, 262
BseMI	GCAATG	2 cut(s)	828, 948
BseMII	CTCAG	5 cut(s)	66, 111, 275, 578, 879
BseNI	ACTGG	2 cut(s)	717, 974
BseRI	GAGGAG	1 cut(s)	825
BseSI	GKGCMC	1 cut(s)	973
BseYI	CCCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	970
BshVI	ATCGAT	1 cut(s)	406
BslI	CCNNNNNNNGG	2 cut(s)	121, 262
BsmAI	GTCTC	3 cut(s)	528, 619, 639
BsmBI	CGTCTC	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	973
Bsp143I	GATC	3 cut(s)	78, 190, 488
Bsp1720I	GCTNAGC	1 cut(s)	888
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	5 cut(s)	67, 112, 274, 579, 880
BspDI	ATCGAT	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	113, 972
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	970
BspTI	CTTAAG	1 cut(s)	278
BsrDI	GCAATG	2 cut(s)	828, 948
BsrI	ACTGG	2 cut(s)	717, 974
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	3 cut(s)	78, 190, 488
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	500
BstAFI	CTTAAG	1 cut(s)	278
BstC8I	GCNNGC	5 cut(s)	72, 253, 597, 855, 877
BstDEI	CTNAG	5 cut(s)	75, 120, 261, 587, 888
BstF5I	GGATG	3 cut(s)	468, 597, 608
BstKTI	GATC	3 cut(s)	81, 193, 491
BstMAI	GTCTC	3 cut(s)	528, 619, 639
BstMBI	GATC	3 cut(s)	78, 190, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 257
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	901
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	2 cut(s)	333, 390
BstSLI	GKGCMC	1 cut(s)	973
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	468, 597, 608
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 710
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	5 cut(s)	72, 253, 597, 855, 877
ClaI	ATCGAT	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	39, 569
CviAII	CATG	6 cut(s)	194, 562, 638, 746, 898, 980
CviQI	GTAC	2 cut(s)	39, 569
DdeI	CTNAG	5 cut(s)	75, 120, 261, 587, 888
DpnI	GATC	3 cut(s)	80, 192, 490
DpnII	GATC	3 cut(s)	78, 190, 488
DraI	TTTAAA	1 cut(s)	864
EaeI	YGGCCR	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	840
EcoRI	GAATTC	1 cut(s)	824
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	639
FaeI	CATG	6 cut(s)	197, 565, 641, 749, 901, 983
FatI	CATG	6 cut(s)	193, 561, 637, 745, 897, 979
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	642
FokI	GGATG	3 cut(s)	455, 604, 615
FspBI	CTAG	3 cut(s)	132, 918, 935
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	975
HaeIII	GGCC	1 cut(s)	255
Hin1II	CATG	6 cut(s)	197, 565, 641, 749, 901, 983
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	2 cut(s)	125, 950
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	5 cut(s)	200, 557, 908, 935, 954
Hpy8I	GTNNAC	1 cut(s)	643
HpyAV	CCTTC	7 cut(s)	317, 479, 697, 805, 862, 905, 954
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	632
HpyCH4V	TGCA	5 cut(s)	140, 180, 215, 335, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 257
HpyF3I	CTNAG	5 cut(s)	75, 120, 261, 587, 888
HpySE526I	ACGT	1 cut(s)	632
Hsp92II	CATG	6 cut(s)	197, 565, 641, 749, 901, 983
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	78, 190, 488
LmnI	GCTCC	4 cut(s)	32, 111, 797, 872
LweI	GCATC	2 cut(s)	477, 582
MaeI	CTAG	3 cut(s)	132, 918, 935
MaeII	ACGT	1 cut(s)	632
MaeIII	GTNAC	2 cut(s)	757, 814
MalI	GATC	3 cut(s)	80, 192, 490
MboI	GATC	3 cut(s)	78, 190, 488
MboII	GAAGA	3 cut(s)	61, 310, 833
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	973
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	8 cut(s)	207, 225, 323, 400, 450, 803, 824, 989
MluNI	TGGCCA	1 cut(s)	255
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	5 cut(s)	99, 279, 540, 840, 863
MslI	CAYNNNNRTG	1 cut(s)	750
Msp20I	TGGCCA	1 cut(s)	255
MspCI	CTTAAG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	137, 257
NdeII	GATC	3 cut(s)	78, 190, 488
NlaIII	CATG	6 cut(s)	197, 565, 641, 749, 901, 983
NlaIV	GGNNCC	2 cut(s)	113, 972
NmuCI	GTSAC	2 cut(s)	757, 814
NspI	RCATGY	1 cut(s)	901
PctI	GAATGC	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	125, 950
PfoI	TCCNGGA	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	840
PsiI	TTATAA	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	113, 972
PstI	CTGCAG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	2 cut(s)	40, 570
RsaNI	GTAC	2 cut(s)	39, 569
RseI	CAYNNNNRTG	1 cut(s)	750
SalI	GTCGAC	1 cut(s)	641
SaqAI	TTAA	5 cut(s)	99, 279, 540, 840, 863
Sau3AI	GATC	3 cut(s)	78, 190, 488
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	973
SfaNI	GCATC	2 cut(s)	477, 582
SfcI	CTRYAG	2 cut(s)	333, 390
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	3 cut(s)	200, 278, 517
SmoI	CTYRAG	3 cut(s)	200, 278, 517
Sse9I	AATT	8 cut(s)	207, 225, 323, 400, 450, 803, 824, 989
SspMI	CTAG	3 cut(s)	132, 918, 935
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	1 cut(s)	635
TaqI	TCGA	3 cut(s)	406, 642, 948
TasI	AATT	8 cut(s)	207, 225, 323, 400, 450, 803, 824, 989
TatI	WGTACW	1 cut(s)	568
TfiI	GAWTC	2 cut(s)	125, 950
Tru1I	TTAA	5 cut(s)	99, 279, 540, 840, 863
Tru9I	TTAA	5 cut(s)	99, 279, 540, 840, 863
TscAI	CASTG	2 cut(s)	342, 717
TseFI	GTSAC	2 cut(s)	757, 814
Tsp45I	GTSAC	2 cut(s)	757, 814
TspDTI	ATGAA	4 cut(s)	509, 541, 817, 897
TspRI	CASTG	2 cut(s)	342, 717
Vha464I	CTTAAG	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	840
XapI	RAATTY	2 cut(s)	824, 989
XbaI	TCTAGA	1 cut(s)	934
XceI	RCATGY	1 cut(s)	901
XmiI	GTMKAC	1 cut(s)	642
XspI	CTAG	3 cut(s)	132, 918, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.