Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011989

Physical Location & Seq

Genomic Coordinates Reverse (-)

1578989 .. 1582224

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g01860.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGACCCCAGATTGCCATTCTTGGAGCTGGAACCTTCGTCAAGACCCAATACATTCCAAGGCTCTCTGAGATCTCCAACCTCCTCGTTCTCAAAGCCATTTGGAGCCGCACGGAGGAATCTGCTAGATCTGCGGTTGAGATTGCTCGGAAGCATTTTCCAGGAGTAGAATGCAAATGGGGTGATAAGGGCCTTGAAGAAATTATTGCAGATAGTTCGATTCTTGGTGTGGCAGTTGTTTTAGCTGGCCAAGCTCAGGTTGATTTCTCACTGAGGATGCTCAAGGGAGGGAAGCATGTGCTTCAAGAGAAACCTGCGGCAGCTTCTACAAGTGAATTGGAAACTGCGCTGTCAAGTTATAAGTCAATTGTTGATAATGCCCCTGACATACCAATTTGGGCTGTTGCAGAAAATTATAGATTTGAACCTGCTTTTGTTGAGGGAAGGAAACTAATGACTGAAGTTGGAGATGTGATGAGCATCCAAGTTATTGTTGAAGGATCAATGAACAGTTCAAACCCTTACTTCTCAAGCTCCTGGAGGCGTGCTTTTACTGGAGGTTTCATTCTGGATATGGGCGTACATTTCATCGCAGGACTGAGGATGCTTGCTGGATGTGAGTTAGTATCTGTGTCAGCTACAACCTCTCATGTTGACAAGACCTTGCCGGCACCAGATATCATTTCCTCTCTCTTTCAACTGGAGAATGGATGTTCAGGTGTTTTTGTGATGGTGGTCTCCTCAAGGTCTCCAAAGATAGTGTGGCGATTTTCCGGCTTGAAGGGAACGCTGCAAATTGAGCGTGGGAACCAAGATGGACGGCATGGCTATATGGTTTTATTTTATGGTTCTGATGGACAAAGCAAAAGCTCCTTCTACCAATTTAGCGGAGTGGATGAAGAATTCAGAGCTTTTTTTGATGACATATCACAGGCCACTCTAAAGAAGGGGACTATCTATGAAGCTGAACCTCGCATGTCCTTTTTGGAAGGTGCCAGAGATGTTGCTGTTCTAGAGGCGATGCTTGAATCTGGAACAAAGCAAGGGGCACCCGTTCAAGTGAAAAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0016491 GO:0019362 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

358

Amino Acids

38.95

Weight (kDa)

5.85

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20790
fragaria_vesca	FvH4_3g43551 FvH4_3g43551
malus_domestica	MD11G1022800.v1.1
prunus_persica	Prupe.6G018500_v2.0.a1
pyrus_communis	pycom11g01860
rosa_chinensis	RchiOBHm_Chr5g0078111
rosa_laevigata	RLG00000031428 RLG00000036752
rosa_multiflora	Rmu_sc0019972.1_g000004
rosa_roxburghii	Rroxscaffold_1G00000370 Rroxscaffold_1G00004110
rosa_rugosa	Rorug05G0458500 Rorug05G0458600
rosa_samantha	Rh5AG052300 Rh5AG513200 Rh5CG559000 Rh5DG119600
rosa_wichuraiana	Rw5G047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
Acc36I	ACCTGC	2 cut(s)	322, 436
AccB1I	GGYRCC	3 cut(s)	670, 992, 1048
AciI	CCGC	4 cut(s)	109, 134, 317, 888
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	902
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	2 cut(s)	115, 256
AgsI	TTSAA	9 cut(s)	197, 305, 425, 497, 516, 698, 781, 1028, 1058
AjnI	CCWGG	2 cut(s)	160, 536
AluBI	AGCT	9 cut(s)	29, 245, 254, 323, 534, 638, 870, 911, 965
AluI	AGCT	9 cut(s)	29, 245, 254, 323, 534, 638, 870, 911, 965
Alw26I	GTCTC	2 cut(s)	742, 753
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	3 cut(s)	190, 247, 933
ApeKI	GCWGC	2 cut(s)	320, 790
ApoI	RAATTY	1 cut(s)	902
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	5, 190
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	1051
BalI	TGGCCA	1 cut(s)	249
BanI	GGYRCC	3 cut(s)	670, 992, 1048
BbvI	GCAGC	2 cut(s)	332, 777
BccI	CCATC	3 cut(s)	724, 809, 848
BceAI	ACGGC	1 cut(s)	836
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BciT130I	CCWGG	2 cut(s)	162, 538
BcoDI	GTCTC	2 cut(s)	742, 753
BfaI	CTAG	2 cut(s)	126, 1013
BfuAI	ACCTGC	2 cut(s)	322, 436
BglII	AGATCT	2 cut(s)	72, 128
BisI	GCNGC	4 cut(s)	109, 318, 321, 791
BlsI	GCNGC	4 cut(s)	110, 319, 322, 792
Bme1390I	CCNGG	2 cut(s)	162, 538
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 190
BmiI	GGNNCC	8 cut(s)	6, 7, 34, 107, 672, 809, 994, 1050
BmrFI	CCNGG	2 cut(s)	162, 538
BmsI	GCATC	4 cut(s)	267, 489, 594, 1011
BpmI	CTGGAG	3 cut(s)	559, 576, 722
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	3 cut(s)	266, 514, 727
BsaBI	GATNNNNATC	1 cut(s)	479
BsaI	GGTCTC	2 cut(s)	742, 753
BsaJI	CCNNGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 256
Bse118I	RCCGGY	1 cut(s)	667
Bse1I	ACTGG	2 cut(s)	559, 705
Bse8I	GATNNNNATC	1 cut(s)	479
BseBI	CCWGG	2 cut(s)	162, 538
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	6 cut(s)	282, 480, 609, 620, 716, 901
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	2 cut(s)	115, 256
BseMII	CTCAG	4 cut(s)	60, 263, 269, 590
BseNI	ACTGG	2 cut(s)	559, 705
BseRI	GAGGAG	2 cut(s)	74, 730
BseSI	GKGCMC	1 cut(s)	1051
BseXI	GCAGC	2 cut(s)	332, 777
BshFI	GGCC	3 cut(s)	192, 249, 935
BshNI	GGYRCC	3 cut(s)	670, 992, 1048
BsiSI	CCGG	2 cut(s)	668, 774
BslFI	GGGAC	2 cut(s)	18, 964
BslI	CCNNNNNNNGG	2 cut(s)	115, 256
BsmAI	GTCTC	2 cut(s)	742, 753
BsmFI	GGGAC	2 cut(s)	18, 964
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	192, 249, 935
Bso31I	GGTCTC	2 cut(s)	742, 753
Bsp1286I	GDGCHC	1 cut(s)	1051
Bsp143I	GATC	3 cut(s)	72, 128, 500
BspACI	CCGC	4 cut(s)	109, 134, 317, 888
BspANI	GGCC	3 cut(s)	192, 249, 935
BspCNI	CTCAG	4 cut(s)	61, 264, 268, 591
BspLI	GGNNCC	8 cut(s)	6, 7, 34, 107, 672, 809, 994, 1050
BspMI	ACCTGC	2 cut(s)	322, 436
BspPI	GGATC	1 cut(s)	508
BspT107I	GGYRCC	3 cut(s)	670, 992, 1048
BspTNI	GGTCTC	2 cut(s)	742, 753
BsrFI	RCCGGY	1 cut(s)	667
BsrI	ACTGG	2 cut(s)	559, 705
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	3 cut(s)	72, 128, 500
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	162, 538
Bst4CI	ACNGT	1 cut(s)	512
BstC8I	GCNNGC	4 cut(s)	247, 546, 609, 669
BstDEI	CTNAG	4 cut(s)	69, 255, 272, 599
BstF5I	GGATG	6 cut(s)	282, 480, 609, 620, 716, 901
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	3 cut(s)	75, 131, 503
BstMAI	GTCTC	2 cut(s)	742, 753
BstMBI	GATC	3 cut(s)	72, 128, 500
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 251, 799
BstNI	CCWGG	2 cut(s)	162, 538
BstNSI	RCATGY	2 cut(s)	299, 979
BstSCI	CCNGG	2 cut(s)	160, 536
BstSLI	GKGCMC	1 cut(s)	1051
BstV1I	GCAGC	2 cut(s)	332, 777
BstX2I	RGATCY	2 cut(s)	72, 128
BstYI	RGATCY	2 cut(s)	72, 128
BsuRI	GGCC	3 cut(s)	192, 249, 935
BtgZI	GCGATG	2 cut(s)	574, 1034
BtsCI	GGATG	6 cut(s)	282, 480, 609, 620, 716, 901
BtsIMutI	CAGTG	1 cut(s)	269
BveI	ACCTGC	2 cut(s)	322, 436
Cac8I	GCNNGC	4 cut(s)	247, 546, 609, 669
CfoI	GCGC	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	5, 190
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	4 cut(s)	296, 650, 824, 976
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	4 cut(s)	69, 255, 272, 599
DpnI	GATC	3 cut(s)	74, 130, 502
DpnII	GATC	3 cut(s)	72, 128, 500
EaeI	YGGCCR	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	59
Eco31I	GGTCTC	2 cut(s)	742, 753
Eco32I	GATATC	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	480
EcoO109I	RGGNCCY	2 cut(s)	5, 190
EcoRI	GAATTC	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	160, 536
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	4 cut(s)	299, 653, 827, 979
FaqI	GGGAC	2 cut(s)	18, 964
FatI	CATG	4 cut(s)	295, 649, 823, 975
Fnu4HI	GCNGC	4 cut(s)	109, 318, 321, 791
FokI	GGATG	6 cut(s)	289, 467, 616, 627, 723, 908
Fsp4HI	GCNGC	4 cut(s)	109, 318, 321, 791
FspBI	CTAG	2 cut(s)	126, 1013
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	4 cut(s)	109, 318, 321, 791
GsuI	CTGGAG	3 cut(s)	559, 576, 722
HaeIII	GGCC	3 cut(s)	192, 249, 935
HapII	CCGG	2 cut(s)	668, 774
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	4 cut(s)	299, 653, 827, 979
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	3 cut(s)	119, 220, 1028
HpaII	CCGG	2 cut(s)	668, 774
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	4 cut(s)	70, 150, 853, 908
Hpy188III	TCNNGA	5 cut(s)	43, 305, 569, 1013, 1032
Hpy8I	GTNNAC	1 cut(s)	655
HpyAV	CCTTC	7 cut(s)	46, 438, 491, 775, 883, 940, 983
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	4 cut(s)	174, 209, 407, 793
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 251, 799
HpyF3I	CTNAG	4 cut(s)	69, 255, 272, 599
Hsp92II	CATG	4 cut(s)	299, 653, 827, 979
HspAI	GCGC	1 cut(s)	347
KflI	GGGWCCC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	667
KroNI	GCCGGC	1 cut(s)	669
Kzo9I	GATC	3 cut(s)	72, 128, 500
LmnI	GCTCC	4 cut(s)	26, 105, 539, 875
Lsp1109I	GCAGC	2 cut(s)	332, 777
LweI	GCATC	4 cut(s)	267, 489, 594, 1011
MaeI	CTAG	2 cut(s)	126, 1013
MalI	GATC	3 cut(s)	74, 130, 502
MboI	GATC	3 cut(s)	72, 128, 500
MboII	GAAGA	2 cut(s)	209, 911
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	2 cut(s)	72, 128
MhlI	GDGCHC	1 cut(s)	1051
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	8 cut(s)	201, 335, 366, 393, 412, 795, 881, 902
MluNI	TGGCCA	1 cut(s)	249
MmeI	TCCRAC	2 cut(s)	102, 445
Mox20I	TGGCCA	1 cut(s)	249
MroNI	GCCGGC	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	2 cut(s)	668, 774
MspR9I	CCNGG	2 cut(s)	162, 538
MunI	CAATTG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	162, 538
MwoI	GCNNNNNNNGC	3 cut(s)	131, 251, 799
NaeI	GCCGGC	1 cut(s)	669
NdeII	GATC	3 cut(s)	72, 128, 500
NgoMIV	GCCGGC	1 cut(s)	667
NlaIII	CATG	4 cut(s)	299, 653, 827, 979
NlaIV	GGNNCC	8 cut(s)	6, 7, 34, 107, 672, 809, 994, 1050
NspI	RCATGY	2 cut(s)	299, 979
PctI	GAATGC	1 cut(s)	176
PdiI	GCCGGC	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	119, 220, 1028
PfoI	TCCNGGA	2 cut(s)	160, 536
PkrI	GCNGC	4 cut(s)	110, 319, 322, 792
PpuMI	RGGWCCY	1 cut(s)	5
PsiI	TTATAA	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	2 cut(s)	160, 536
PspGI	CCWGG	2 cut(s)	160, 536
PspN4I	GGNNCC	8 cut(s)	6, 7, 34, 107, 672, 809, 994, 1050
PspPI	GGNCC	2 cut(s)	5, 190
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	2 cut(s)	72, 128
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
SatI	GCNGC	4 cut(s)	109, 318, 321, 791
Sau3AI	GATC	3 cut(s)	72, 128, 500
Sau96I	GGNCC	2 cut(s)	5, 190
ScrFI	CCNGG	2 cut(s)	162, 538
SduI	GDGCHC	1 cut(s)	1051
SfaNI	GCATC	4 cut(s)	267, 489, 594, 1011
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	3 cut(s)	281, 529, 742
SmoI	CTYRAG	3 cut(s)	281, 529, 742
Sse9I	AATT	8 cut(s)	201, 335, 366, 393, 412, 795, 881, 902
SsiI	CCGC	4 cut(s)	109, 134, 317, 888
SspMI	CTAG	2 cut(s)	126, 1013
StyD4I	CCNGG	2 cut(s)	160, 536
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	512
TaqI	TCGA	1 cut(s)	218
TasI	AATT	8 cut(s)	201, 335, 366, 393, 412, 795, 881, 902
TauI	GCSGC	2 cut(s)	111, 320
TfiI	GAWTC	3 cut(s)	119, 220, 1028
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	2 cut(s)	320, 790
TspDTI	ATGAA	5 cut(s)	521, 553, 577, 912, 975
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	902
XbaI	TCTAGA	1 cut(s)	1012
XceI	RCATGY	2 cut(s)	299, 979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	759
XspI	CTAG	2 cut(s)	126, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.