Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011989

Physical Location & Seq

Genomic Coordinates Forward (+)

10811222 .. 10832400

Gene Structure 21179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG119600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATTGGGTCGAAATGCCTTGACGACGTGCCAGCTTCTCCTGTTTACGGGTTTGATGATCTCGAGGAGGTACTGACAGATCAGATGATAGGGATCGTGATTGTGTTGAGGTTGAGATTGCCGATTCAGGACCGTCTGACGAAGATTGAGTCTGCTACAGGTGCAGTTGAGATTGCTGGGAAACATTTTCCAGGAGTAGAATGCAAATGGGGTGATCAGGGTCTTGAGGAAATTATTGTAGATAGTTCAATTCTTGGTGTTGCTGTGGTTTTAGCTGGCCAAGTTCAGGTTGATTTCTCACTGAAGCTTCTCAAAGCAGGGAAGAATGTCCTTCAAGCTACAAGTGAATTGGAAACTGCAGTGTCAAGTTATAAATCTATTGTTGCTAATACCCCCAATAAACCAATTTGGGCTGTAGCAGAAAATTATCGATTTGAACCTGCTCATAGCTTGGAGTTACAACTTAAAACTTGTTACTGTTGGAAATCACTGATGGATTTGCCCAGAATATCACCAAACCTGGAACATCTTGTGGTTGACAACGACATTGCATGTGCACATTCGGTTCCTGACAATAAGCATGAATGGCATCCACCGGAGTCTGCGGCTGTTTGTTTGGTATCGCACATCAAGACTATTTGCTTCATGAGGAGATTCCAGGGAACTCCAAATGAGATTAAAGTGGCCAGGTACTTGCAGAAGCATGGCGAGGTTTTGACTTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0016491 GO:0019362 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

242

Amino Acids

26.77

Weight (kDa)

5.51

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBD	PF08387	199 - 239	4e-08	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20790
fragaria_vesca	FvH4_3g43551 FvH4_3g43551
malus_domestica	MD11G1022800.v1.1
prunus_persica	Prupe.6G018500_v2.0.a1
pyrus_communis	pycom11g01860
rosa_chinensis	RchiOBHm_Chr5g0078111
rosa_laevigata	RLG00000031428 RLG00000036752
rosa_multiflora	Rmu_sc0019972.1_g000004
rosa_roxburghii	Rroxscaffold_1G00000370 Rroxscaffold_1G00004110
rosa_rugosa	Rorug05G0458500 Rorug05G0458600
rosa_samantha	Rh5AG052300 Rh5AG513200 Rh5CG559000 Rh5DG119600
rosa_wichuraiana	Rw5G047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	448
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	2 cut(s)	277, 684
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	72, 692
AfiI	CCNNNNNNNGG	2 cut(s)	47, 286
AgsI	TTSAA	3 cut(s)	249, 335, 437
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	4 cut(s)	190, 519, 657, 686
AluBI	AGCT	5 cut(s)	35, 275, 307, 338, 450
AluI	AGCT	5 cut(s)	35, 275, 307, 338, 450
Alw21I	GWGCWC	1 cut(s)	559
Alw44I	GTGCAC	1 cut(s)	555
AlwI	GGATC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	2 cut(s)	277, 684
ApaLI	GTGCAC	1 cut(s)	555
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	224, 504
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	559
BalI	TGGCCA	2 cut(s)	279, 686
Bbv12I	GWGCWC	1 cut(s)	559
BccI	CCATC	1 cut(s)	487
BciT130I	CCWGG	4 cut(s)	192, 521, 659, 688
BclI	TGATCA	1 cut(s)	214
BfmI	CTRYAG	3 cut(s)	156, 357, 414
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	4 cut(s)	192, 521, 659, 688
Bme18I	GGWCC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	4 cut(s)	192, 521, 659, 688
BmsI	GCATC	1 cut(s)	598
BpuEI	CTTGAG	1 cut(s)	245
Bsa29I	ATCGAT	1 cut(s)	430
BsaBI	GATNNNNATC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	658
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 286
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	1 cut(s)	92
BseBI	CCWGG	4 cut(s)	192, 521, 659, 688
BseCI	ATCGAT	1 cut(s)	430
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	47, 286
BseMI	GCAATG	1 cut(s)	546
BseRI	GAGGAG	2 cut(s)	80, 664
BseSI	GKGCMC	1 cut(s)	559
BseYI	CCCAGC	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	279, 686
BshVI	ATCGAT	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	47, 286
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	279, 686
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	4 cut(s)	58, 79, 93, 214
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	2 cut(s)	279, 686
BspDI	ATCGAT	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	1 cut(s)	567
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	546
BssECI	CCNNGG	1 cut(s)	658
BssMI	GATC	4 cut(s)	58, 79, 93, 214
Bst2UI	CCWGG	4 cut(s)	192, 521, 659, 688
Bst4CI	ACNGT	2 cut(s)	134, 479
BstC8I	GCNNGC	2 cut(s)	33, 277
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	4 cut(s)	61, 82, 96, 217
BstMBI	GATC	4 cut(s)	58, 79, 93, 214
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 586
BstNI	CCWGG	4 cut(s)	192, 521, 659, 688
BstNSI	RCATGY	1 cut(s)	555
BstSCI	CCNGG	4 cut(s)	190, 519, 657, 686
BstSFI	CTRYAG	3 cut(s)	156, 357, 414
BstSLI	GKGCMC	1 cut(s)	559
Bsu15I	ATCGAT	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	279, 686
BsuTUI	ATCGAT	1 cut(s)	430
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	3 cut(s)	299, 366, 488
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	2 cut(s)	33, 277
CciI	TCATGA	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	71, 691
CviAII	CATG	4 cut(s)	552, 581, 646, 704
CviJI	RGCY	9 cut(s)	35, 275, 279, 307, 338, 413, 450, 608, 686
CviKI_1	RGCY	9 cut(s)	35, 275, 279, 307, 338, 413, 450, 608, 686
CviQI	GTAC	2 cut(s)	71, 691
DpnI	GATC	4 cut(s)	60, 81, 95, 216
DpnII	GATC	4 cut(s)	58, 79, 93, 214
EaeI	YGGCCR	2 cut(s)	277, 684
Eco47I	GGWCC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	62
EcoRII	CCWGG	4 cut(s)	190, 519, 657, 686
FaeI	CATG	4 cut(s)	555, 584, 649, 707
FaiI	YATR	6 cut(s)	372, 447, 553, 582, 647, 705
FatI	CATG	4 cut(s)	551, 580, 645, 703
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	1 cut(s)	576
Fsp4HI	GCNGC	1 cut(s)	606
GluI	GCNGC	1 cut(s)	606
GsaI	CCCAGC	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	279, 686
HapII	CCGG	1 cut(s)	596
Hin1II	CATG	4 cut(s)	555, 584, 649, 707
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	4 cut(s)	124, 149, 599, 654
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	2 cut(s)	224, 504
Hpy166II	GTNNAC	3 cut(s)	46, 538, 557
Hpy188I	TCNGA	3 cut(s)	84, 138, 724
Hpy188III	TCNNGA	7 cut(s)	62, 97, 128, 224, 569, 631, 646
Hpy8I	GTNNAC	3 cut(s)	46, 538, 557
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	134, 479
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	6 cut(s)	164, 204, 359, 551, 557, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 586
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	4 cut(s)	555, 584, 649, 707
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	58, 79, 93, 214
LweI	GCATC	1 cut(s)	598
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	456, 473
MalI	GATC	4 cut(s)	60, 81, 95, 216
MboI	GATC	4 cut(s)	58, 79, 93, 214
MboII	GAAGA	2 cut(s)	154, 334
MhlI	GDGCHC	1 cut(s)	559
MlsI	TGGCCA	2 cut(s)	279, 686
MluCI	AATT	5 cut(s)	231, 249, 347, 405, 424
MluNI	TGGCCA	2 cut(s)	279, 686
MlyI	GAGTC	2 cut(s)	158, 608
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	6 cut(s)	58, 61, 102, 220, 642, 703
Mox20I	TGGCCA	2 cut(s)	279, 686
MscI	TGGCCA	2 cut(s)	279, 686
MseI	TTAA	2 cut(s)	465, 678
Msp20I	TGGCCA	2 cut(s)	279, 686
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	4 cut(s)	192, 521, 659, 688
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	4 cut(s)	192, 521, 659, 688
MwoI	GCNNNNNNNGC	2 cut(s)	161, 586
NdeII	GATC	4 cut(s)	58, 79, 93, 214
NlaIII	CATG	4 cut(s)	555, 584, 649, 707
NlaIV	GGNNCC	1 cut(s)	567
NspI	RCATGY	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	62
PagI	TCATGA	1 cut(s)	645
PctI	GAATGC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	124, 654
PfoI	TCCNGGA	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	2 cut(s)	157, 607
PpsI	GAGTC	2 cut(s)	157, 607
PsiI	TTATAA	1 cut(s)	372
Psp6I	CCWGG	4 cut(s)	190, 519, 657, 686
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	4 cut(s)	190, 519, 657, 686
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	361
RsaI	GTAC	2 cut(s)	72, 692
RsaNI	GTAC	2 cut(s)	71, 691
SaqAI	TTAA	2 cut(s)	465, 678
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	4 cut(s)	58, 79, 93, 214
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	2 cut(s)	158, 608
ScrFI	CCNGG	4 cut(s)	192, 521, 659, 688
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	3 cut(s)	156, 357, 414
Sfr274I	CTCGAG	1 cut(s)	62
SinI	GGWCC	1 cut(s)	130
SlaI	CTCGAG	1 cut(s)	62
SmlI	CTYRAG	2 cut(s)	62, 224
SmoI	CTYRAG	2 cut(s)	62, 224
Sse9I	AATT	5 cut(s)	231, 249, 347, 405, 424
SsiI	CCGC	1 cut(s)	605
StyD4I	CCNGG	4 cut(s)	190, 519, 657, 686
TaaI	ACNGT	2 cut(s)	134, 479
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	3 cut(s)	11, 63, 430
TasI	AATT	5 cut(s)	231, 249, 347, 405, 424
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	2 cut(s)	124, 654
Tru1I	TTAA	2 cut(s)	465, 678
Tru9I	TTAA	2 cut(s)	465, 678
TscAI	CASTG	3 cut(s)	306, 366, 495
TspDTI	ATGAA	2 cut(s)	597, 634
TspRI	CASTG	3 cut(s)	306, 366, 495
VneI	GTGCAC	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	130
XceI	RCATGY	1 cut(s)	555
XhoI	CTCGAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.