Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011989

Physical Location & Seq

Genomic Coordinates Forward (+)

5062473 .. 5065580

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATGAGCATCAGCACCACCACGACGGTGAGAGAACATAGAAGAAACAGAGTGAAGCAGAATCCCGACTATGGCCATCTTCACCTGACCCCTCTTTGGGATCAGACGAGCAGTAATCCTCTGATTCAAGTTCCCACCGTTGATCATAGCACTCCTTGCACCTTCCATCTAGTTTTTGCTTCTGGGTTTGCTTTAAAATCCAAGAGGGCCACTGAAACTGAGAAAGATATAATTAAGAAGATCGAGAAGCTTGAAACTTTGAAGCTGGCTTCAGCTACGCTCAATCCCTTTCACGCGCTTCAGCCTCGGCTCTCCATCTCTTTATCGCGCTTCATCCTCCTTGAACTACTCGTCCAGGAGTCTGCTACAGGTGCAGTTGAGATTGCTGGGAAACATTTTCCAGGAGTAGAATGCAAATGGGGTGATCAGGGTCTTGAGGAAATTATTGCAGATAGTTCAATTCTTGGTGTTGCTGTGGTTTTAGCTGGCCAAGCTCAGGTTGATTTCTCACTGAAGCTTCTCAAAGCAGGGAAGAATGTCCTTCAAGCTACAAGTGAATTGGAAACTGCAGTGTCAAGTTATAAATCTATTGTTGCTAATACCCCCAATAAACCAATTTGGGCTGTAGCGGAAAATTATCGATTTGAACGTGCTCATGTTATCTCAGGCTGTGTTGTATTAATAGGTGGACTTGTTAGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0016491 GO:0019362 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

235

Amino Acids

25.57

Weight (kDa)

8.41

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20790
fragaria_vesca	FvH4_3g43551 FvH4_3g43551
malus_domestica	MD11G1022800.v1.1
prunus_persica	Prupe.6G018500_v2.0.a1
pyrus_communis	pycom11g01860
rosa_chinensis	RchiOBHm_Chr5g0078111
rosa_laevigata	RLG00000031428 RLG00000036752
rosa_multiflora	Rmu_sc0019972.1_g000004
rosa_roxburghii	Rroxscaffold_1G00000370 Rroxscaffold_1G00004110
rosa_rugosa	Rorug05G0458500 Rorug05G0458600
rosa_samantha	Rh5AG052300 Rh5AG513200 Rh5CG559000 Rh5DG119600
rosa_wichuraiana	Rw5G047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AccII	CGCG	2 cut(s)	296, 328
AciI	CCGC	1 cut(s)	629
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	2 cut(s)	73, 487
AcuI	CTGAAG	3 cut(s)	255, 284, 533
AfiI	CCNNNNNNNGG	4 cut(s)	71, 96, 97, 496
AgsI	TTSAA	7 cut(s)	128, 254, 262, 344, 459, 545, 647
AjnI	CCWGG	2 cut(s)	354, 400
AleI	CACNNNNGTG	1 cut(s)	26
AloI	GAACNNNNNNTCC	2 cut(s)	336, 368
AluBI	AGCT	7 cut(s)	250, 265, 275, 485, 494, 517, 548
AluI	AGCT	7 cut(s)	250, 265, 275, 485, 494, 517, 548
Alw21I	GWGCWC	1 cut(s)	655
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	3 cut(s)	73, 207, 487
AseI	ATTAAT	1 cut(s)	680
AspLEI	GCGC	2 cut(s)	298, 330
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	40, 74, 434
BalI	TGGCCA	2 cut(s)	75, 489
Bbv12I	GWGCWC	1 cut(s)	655
BccI	CCATC	3 cut(s)	84, 174, 323
BciT130I	CCWGG	2 cut(s)	356, 402
BclI	TGATCA	2 cut(s)	142, 424
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	3 cut(s)	366, 567, 624
Bme1390I	CCNGG	2 cut(s)	356, 402
BmgT120I	GGNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	356, 402
BmsI	GCATC	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	455
Bsa29I	ATCGAT	1 cut(s)	640
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 96, 97, 496
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	356, 402
BseCI	ATCGAT	1 cut(s)	640
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	1 cut(s)	333
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	4 cut(s)	71, 96, 97, 496
BseMII	CTCAG	3 cut(s)	210, 509, 678
BseYI	CCCAGC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	393
Bsh1236I	CGCG	2 cut(s)	296, 328
BshFI	GGCC	3 cut(s)	75, 209, 489
BshVI	ATCGAT	1 cut(s)	640
BsiHKAI	GWGCWC	1 cut(s)	655
BslI	CCNNNNNNNGG	4 cut(s)	71, 96, 97, 496
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	75, 209, 489
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp143I	GATC	4 cut(s)	100, 142, 240, 424
BspACI	CCGC	1 cut(s)	629
BspANI	GGCC	3 cut(s)	75, 209, 489
BspCNI	CTCAG	3 cut(s)	211, 508, 677
BspDI	ATCGAT	1 cut(s)	640
BspFNI	CGCG	2 cut(s)	296, 328
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	4 cut(s)	100, 142, 240, 424
Bst2UI	CCWGG	2 cut(s)	356, 402
Bst4CI	ACNGT	2 cut(s)	28, 139
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	267, 487
BstDEI	CTNAG	3 cut(s)	219, 495, 664
BstF5I	GGATG	1 cut(s)	333
BstFNI	CGCG	2 cut(s)	296, 328
BstHHI	GCGC	2 cut(s)	298, 330
BstKTI	GATC	4 cut(s)	103, 145, 243, 427
BstMBI	GATC	4 cut(s)	100, 142, 240, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 371, 491
BstNI	CCWGG	2 cut(s)	356, 402
BstSCI	CCNGG	2 cut(s)	354, 400
BstSFI	CTRYAG	3 cut(s)	366, 567, 624
BstUI	CGCG	2 cut(s)	296, 328
Bsu15I	ATCGAT	1 cut(s)	640
BsuRI	GGCC	3 cut(s)	75, 209, 489
BsuTUI	ATCGAT	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	333
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	3 cut(s)	210, 509, 576
Cac8I	GCNNGC	2 cut(s)	267, 487
CfoI	GCGC	2 cut(s)	298, 330
Cfr13I	GGNCC	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	640
CviAII	CATG	1 cut(s)	656
DdeI	CTNAG	3 cut(s)	219, 495, 664
DpnI	GATC	4 cut(s)	102, 144, 242, 426
DpnII	GATC	4 cut(s)	100, 142, 240, 424
DraI	TTTAAA	1 cut(s)	195
EaeI	YGGCCR	2 cut(s)	73, 487
Eco57I	CTGAAG	3 cut(s)	255, 284, 533
EcoRII	CCWGG	2 cut(s)	354, 400
FaeI	CATG	1 cut(s)	659
FaiI	YATR	6 cut(s)	39, 72, 147, 230, 582, 657
FatI	CATG	1 cut(s)	655
FbaI	TGATCA	2 cut(s)	142, 424
FokI	GGATG	1 cut(s)	320
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	2 cut(s)	297, 329
GsaI	CCCAGC	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	75, 209, 489
HhaI	GCGC	2 cut(s)	298, 330
Hin1II	CATG	1 cut(s)	659
Hin6I	GCGC	2 cut(s)	296, 328
HinP1I	GCGC	2 cut(s)	296, 328
HindIII	AAGCTT	2 cut(s)	248, 515
HinfI	GANTC	3 cut(s)	61, 124, 359
HphI	GGTGA	3 cut(s)	40, 74, 434
Hpy166II	GTNNAC	1 cut(s)	689
Hpy188I	TCNGA	2 cut(s)	105, 123
Hpy188III	TCNNGA	3 cut(s)	65, 244, 434
Hpy8I	GTNNAC	1 cut(s)	689
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	172, 551
HpyCH4III	ACNGT	2 cut(s)	28, 139
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	5 cut(s)	159, 374, 414, 449, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 371, 491
HpyF3I	CTNAG	3 cut(s)	219, 495, 664
HpySE526I	ACGT	1 cut(s)	649
Hsp92II	CATG	1 cut(s)	659
HspAI	GCGC	2 cut(s)	296, 328
Ksp22I	TGATCA	2 cut(s)	142, 424
Kzo9I	GATC	4 cut(s)	100, 142, 240, 424
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	649
MalI	GATC	4 cut(s)	102, 144, 242, 426
MboI	GATC	4 cut(s)	100, 142, 240, 424
MboII	GAAGA	4 cut(s)	54, 71, 250, 544
MhlI	GDGCHC	1 cut(s)	655
MlsI	TGGCCA	2 cut(s)	75, 489
MluCI	AATT	6 cut(s)	231, 441, 459, 557, 615, 634
MluNI	TGGCCA	2 cut(s)	75, 489
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	6 cut(s)	102, 129, 198, 315, 347, 430
Mox20I	TGGCCA	2 cut(s)	75, 489
MscI	TGGCCA	2 cut(s)	75, 489
MseI	TTAA	3 cut(s)	194, 234, 680
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	2 cut(s)	75, 489
MspR9I	CCNGG	2 cut(s)	356, 402
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	2 cut(s)	356, 402
MvnI	CGCG	2 cut(s)	296, 328
MwoI	GCNNNNNNNGC	3 cut(s)	156, 371, 491
NdeII	GATC	4 cut(s)	100, 142, 240, 424
NlaIII	CATG	1 cut(s)	659
NmeAIII	GCCGAG	1 cut(s)	286
OliI	CACNNNNGTG	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	646
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	61, 124
PfoI	TCCNGGA	2 cut(s)	354, 400
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	680
PsiI	TTATAA	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	354, 400
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	2 cut(s)	354, 400
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	571
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	194, 234, 680
Sau3AI	GATC	4 cut(s)	100, 142, 240, 424
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	356, 402
SduI	GDGCHC	1 cut(s)	655
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	3 cut(s)	366, 567, 624
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	6 cut(s)	231, 441, 459, 557, 615, 634
SsiI	CCGC	1 cut(s)	629
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	354, 400
TaaI	ACNGT	2 cut(s)	28, 139
TaiI	ACGT	1 cut(s)	652
TaqI	TCGA	2 cut(s)	243, 640
TasI	AATT	6 cut(s)	231, 441, 459, 557, 615, 634
TfiI	GAWTC	2 cut(s)	61, 124
Tru1I	TTAA	3 cut(s)	194, 234, 680
Tru9I	TTAA	3 cut(s)	194, 234, 680
TscAI	CASTG	3 cut(s)	217, 516, 576
TspDTI	ATGAA	1 cut(s)	322
TspRI	CASTG	3 cut(s)	217, 516, 576
VspI	ATTAAT	1 cut(s)	680
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.