Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011989

Physical Location & Seq

Genomic Coordinates Reverse (-)

1995386 .. 1999256

Gene Structure 3871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1022800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGACCCCATATTGCCATTCTTGGAGCTGGAACCTTCGTGAAGACCCAATACATTCCACGGCTCTCTGAGATCTCCAACCTCCTCGTTCTCAAAGCCATTTGGAGCCGCACGGAGGAATCTGCTAGATCTGCTGTTGAGATTGCTCGGAAGCATTTTCCAGGAGTAGAATGCAAATGGGGTGATAAGGGCCTTGAAGAAATTATTGCAGATAGTTCGATTCTTGGTGTTGCAGTTGTTTTAGCTGGCCAAGCTCAGGTTGATTTCTCATTGAGGATGCTCAAGGCAGGGAAGCATGTGCTTCAAGAGAAACCTGCGGCAGCTTCTACAAGCGAATTGGAAACTGCGCTGTCAAGTTATAAGTCAATTGTTGATAATGCCCCTGACAAACCAATTTGGGCTGTTGCAGAAAATTATAGATTTGAACCTGCATTTGTTGAGGGAAGGAAACTAATGACTGAAGTTGGAGATGTGATGAGCATCCAAGTTATTGTTGAAGGATCAATGAACAGTTCGAACCCTTACTTCTCAAGCTCCTGGAGGCGTGATTTTGCTGGAGGTTTCATTCTGGATATGGGAGTACATTTCATCGCAGGACTGAGGATGCTTGCTGGATGTGAGTTAGTATCTGTGTCAGCTACAACCTCTCATGTTGACAAGACCTTGCCGGCACCAGATAGCATTTCCTCTCTCTTTCAACTGGAGAATGGATGTTCAGGGGTTTTTGTGATGGTGGTCTCCTCAAGGTCACCAAAGATAGTTTGGCGATTTTCTGGCTTGAAGGGGACGCTGCAAATTGAGCGTGGGAACCAAGATGGACAGCATGGCTACGTGGTTTTATTTTATGGTTCTGATGGACAAAGCACAAGCTCCTTCTACCAATTTAGTGGAGTGGATGAAGAATTCAGAGCTTTCTTTAATGACATAACACAGGCCACTCTAAAGAAGGGGACTAGCTACGAAGCTGAGCCTCGCATGTCTTTTTTGGAAGGTGCCAGAGATGTTGCCGTTCTAGAGGCAATGCTTGAATCTGGAACGAAGCAAGGGGCGCCCGTTCAAGTGAAAAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0016491 GO:0019362 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

358

Amino Acids

38.87

Weight (kDa)

5.78

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GFO_IDH_MocA	PF01408	5 - 117	1.8e-11	Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3	PF22725	154 - 264	5.4e-13	GFO/IDH/MocA C-terminal domain
GFO_IDH_MocA_C	PF02894	156 - 353	5.8e-11	Oxidoreductase family, C-terminal alpha/beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20790
fragaria_vesca	FvH4_3g43551 FvH4_3g43551
malus_domestica	MD11G1022800.v1.1
prunus_persica	Prupe.6G018500_v2.0.a1
pyrus_communis	pycom11g01860
rosa_chinensis	RchiOBHm_Chr5g0078111
rosa_laevigata	RLG00000031428 RLG00000036752
rosa_multiflora	Rmu_sc0019972.1_g000004
rosa_roxburghii	Rroxscaffold_1G00000370 Rroxscaffold_1G00004110
rosa_rugosa	Rorug05G0458500 Rorug05G0458600
rosa_samantha	Rh5AG052300 Rh5AG513200 Rh5CG559000 Rh5DG119600
rosa_wichuraiana	Rw5G047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
Acc36I	ACCTGC	2 cut(s)	322, 436
AccB1I	GGYRCC	3 cut(s)	670, 992, 1048
AciI	CCGC	2 cut(s)	109, 317
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	902
AcuI	CTGAAG	1 cut(s)	480
AcyI	GRCGYC	1 cut(s)	1049
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	2 cut(s)	115, 256
AgsI	TTSAA	8 cut(s)	197, 305, 425, 497, 698, 781, 1028, 1058
AjnI	CCWGG	2 cut(s)	160, 536
Alw26I	GTCTC	1 cut(s)	742
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	3 cut(s)	190, 247, 933
ApeKI	GCWGC	2 cut(s)	320, 790
ApoI	RAATTY	1 cut(s)	902
AspLEI	GCGC	2 cut(s)	349, 1051
AspS9I	GGNCC	2 cut(s)	5, 190
AsuHPI	GGTGA	2 cut(s)	194, 741
AsuII	TTCGAA	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	5
BalI	TGGCCA	1 cut(s)	249
BanI	GGYRCC	3 cut(s)	670, 992, 1048
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	332, 777
BccI	CCATC	3 cut(s)	724, 809, 848
BceAI	ACGGC	2 cut(s)	77, 992
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BciT130I	CCWGG	2 cut(s)	162, 538
BcoDI	GTCTC	1 cut(s)	742
BfaI	CTAG	3 cut(s)	126, 954, 1013
BfoI	RGCGCY	1 cut(s)	1052
BfuAI	ACCTGC	2 cut(s)	322, 436
BglII	AGATCT	2 cut(s)	72, 128
BisI	GCNGC	4 cut(s)	109, 318, 321, 791
BlpI	GCTNAGC	1 cut(s)	966
BlsI	GCNGC	4 cut(s)	110, 319, 322, 792
Bme1390I	CCNGG	2 cut(s)	162, 538
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 190
BmiI	GGNNCC	8 cut(s)	6, 7, 34, 107, 672, 809, 994, 1050
BmrFI	CCNGG	2 cut(s)	162, 538
BmsI	GCATC	3 cut(s)	267, 489, 594
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	3 cut(s)	559, 576, 722
Bpu10I	CCTNAGC	1 cut(s)	255
Bpu1102I	GCTNAGC	1 cut(s)	966
Bpu14I	TTCGAA	1 cut(s)	515
BpuEI	CTTGAG	3 cut(s)	266, 514, 727
BsaAI	YACGTR	1 cut(s)	832
BsaBI	GATNNNNATC	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	1049
BsaI	GGTCTC	1 cut(s)	742
BsaJI	CCNNGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 256
Bse118I	RCCGGY	1 cut(s)	667
Bse1I	ACTGG	1 cut(s)	705
Bse3DI	GCAATG	1 cut(s)	1026
Bse8I	GATNNNNATC	1 cut(s)	479
BseBI	CCWGG	2 cut(s)	162, 538
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	6 cut(s)	282, 480, 609, 620, 716, 901
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	2 cut(s)	115, 256
BseMI	GCAATG	1 cut(s)	1026
BseMII	CTCAG	4 cut(s)	60, 269, 590, 957
BseNI	ACTGG	1 cut(s)	705
BseRI	GAGGAG	2 cut(s)	74, 730
BseXI	GCAGC	2 cut(s)	332, 777
BshFI	GGCC	3 cut(s)	192, 249, 935
BshNI	GGYRCC	3 cut(s)	670, 992, 1048
BsiSI	CCGG	1 cut(s)	668
BslFI	GGGAC	3 cut(s)	18, 799, 964
BslI	CCNNNNNNNGG	2 cut(s)	115, 256
BsmAI	GTCTC	1 cut(s)	742
BsmFI	GGGAC	3 cut(s)	18, 799, 964
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	192, 249, 935
Bso31I	GGTCTC	1 cut(s)	742
Bsp119I	TTCGAA	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	72, 128, 500
Bsp1720I	GCTNAGC	1 cut(s)	966
BspACI	CCGC	2 cut(s)	109, 317
BspANI	GGCC	3 cut(s)	192, 249, 935
BspCNI	CTCAG	4 cut(s)	61, 268, 591, 958
BspLI	GGNNCC	8 cut(s)	6, 7, 34, 107, 672, 809, 994, 1050
BspMI	ACCTGC	2 cut(s)	322, 436
BspPI	GGATC	1 cut(s)	508
BspT104I	TTCGAA	1 cut(s)	515
BspT107I	GGYRCC	3 cut(s)	670, 992, 1048
BspTNI	GGTCTC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	1026
BsrFI	RCCGGY	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	705
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	3 cut(s)	72, 128, 500
BssNI	GRCGYC	1 cut(s)	1049
Bst2UI	CCWGG	2 cut(s)	162, 538
Bst4CI	ACNGT	1 cut(s)	512
BstACI	GRCGYC	1 cut(s)	1049
BstBAI	YACGTR	1 cut(s)	832
BstBI	TTCGAA	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	247, 609, 669
BstDEI	CTNAG	4 cut(s)	69, 255, 599, 966
BstDSI	CCRYGG	1 cut(s)	59
BstEII	GGTNACC	1 cut(s)	747
BstF5I	GGATG	6 cut(s)	282, 480, 609, 620, 716, 901
BstH2I	RGCGCY	1 cut(s)	1052
BstHHI	GCGC	2 cut(s)	349, 1051
BstKTI	GATC	3 cut(s)	75, 131, 503
BstMAI	GTCTC	1 cut(s)	742
BstMBI	GATC	3 cut(s)	72, 128, 500
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 251, 799, 1048
BstNI	CCWGG	2 cut(s)	162, 538
BstNSI	RCATGY	2 cut(s)	299, 979
BstPI	GGTNACC	1 cut(s)	747
BstSCI	CCNGG	2 cut(s)	160, 536
BstV1I	GCAGC	2 cut(s)	332, 777
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	2 cut(s)	72, 128
BstXI	CCANNNNNNTGG	1 cut(s)	887
BstYI	RGATCY	2 cut(s)	72, 128
BsuRI	GGCC	3 cut(s)	192, 249, 935
BtgI	CCRYGG	1 cut(s)	59
BtgZI	GCGATG	1 cut(s)	574
BtsCI	GGATG	6 cut(s)	282, 480, 609, 620, 716, 901
BveI	ACCTGC	2 cut(s)	322, 436
Cac8I	GCNNGC	3 cut(s)	247, 609, 669
CfoI	GCGC	2 cut(s)	349, 1051
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	5, 190
CseI	GACGC	1 cut(s)	796
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	4 cut(s)	296, 650, 824, 976
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	4 cut(s)	69, 255, 599, 966
DinI	GGCGCC	1 cut(s)	1050
DpnI	GATC	3 cut(s)	74, 130, 502
DpnII	GATC	3 cut(s)	72, 128, 500
EaeI	YGGCCR	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	480
Eco91I	GGTNACC	1 cut(s)	747
EcoO109I	RGGNCCY	2 cut(s)	5, 190
EcoO65I	GGTNACC	1 cut(s)	747
EcoRI	GAATTC	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	160, 536
EgeI	GGCGCC	1 cut(s)	1050
EheI	GGCGCC	1 cut(s)	1050
FaeI	CATG	4 cut(s)	299, 653, 827, 979
FaqI	GGGAC	3 cut(s)	18, 799, 964
FatI	CATG	4 cut(s)	295, 649, 823, 975
Fnu4HI	GCNGC	4 cut(s)	109, 318, 321, 791
FokI	GGATG	6 cut(s)	289, 467, 616, 627, 723, 908
Fsp4HI	GCNGC	4 cut(s)	109, 318, 321, 791
FspBI	CTAG	3 cut(s)	126, 954, 1013
GlaI	GCGC	2 cut(s)	348, 1050
GluI	GCNGC	4 cut(s)	109, 318, 321, 791
GsuI	CTGGAG	3 cut(s)	559, 576, 722
HaeII	RGCGCY	1 cut(s)	1052
HaeIII	GGCC	3 cut(s)	192, 249, 935
HapII	CCGG	1 cut(s)	668
HgaI	GACGC	1 cut(s)	796
HhaI	GCGC	2 cut(s)	349, 1051
Hin1I	GRCGYC	1 cut(s)	1049
Hin1II	CATG	4 cut(s)	299, 653, 827, 979
Hin6I	GCGC	2 cut(s)	347, 1049
HinP1I	GCGC	2 cut(s)	347, 1049
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	3 cut(s)	119, 220, 1028
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	2 cut(s)	194, 741
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	4 cut(s)	70, 150, 853, 908
Hpy188III	TCNNGA	5 cut(s)	40, 305, 569, 1013, 1032
Hpy8I	GTNNAC	1 cut(s)	655
HpyAV	CCTTC	7 cut(s)	46, 438, 491, 775, 883, 940, 983
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	6 cut(s)	174, 209, 233, 407, 431, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 251, 799, 1048
HpyF3I	CTNAG	4 cut(s)	69, 255, 599, 966
HpySE526I	ACGT	1 cut(s)	831
Hsp92I	GRCGYC	1 cut(s)	1049
Hsp92II	CATG	4 cut(s)	299, 653, 827, 979
HspAI	GCGC	2 cut(s)	347, 1049
KasI	GGCGCC	1 cut(s)	1048
KflI	GGGWCCC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	667
KroNI	GCCGGC	1 cut(s)	669
Kzo9I	GATC	3 cut(s)	72, 128, 500
LmnI	GCTCC	4 cut(s)	26, 105, 539, 875
Lsp1109I	GCAGC	2 cut(s)	332, 777
LweI	GCATC	3 cut(s)	267, 489, 594
MaeI	CTAG	3 cut(s)	126, 954, 1013
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	1 cut(s)	747
MalI	GATC	3 cut(s)	74, 130, 502
MboI	GATC	3 cut(s)	72, 128, 500
MboII	GAAGA	3 cut(s)	55, 209, 911
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	2 cut(s)	72, 128
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	8 cut(s)	201, 335, 366, 393, 412, 795, 881, 902
MluNI	TGGCCA	1 cut(s)	249
Mly113I	GGCGCC	1 cut(s)	1049
MmeI	TCCRAC	2 cut(s)	102, 445
Mox20I	TGGCCA	1 cut(s)	249
MroNI	GCCGGC	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	1 cut(s)	918
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	2 cut(s)	162, 538
MunI	CAATTG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	162, 538
MwoI	GCNNNNNNNGC	4 cut(s)	131, 251, 799, 1048
NaeI	GCCGGC	1 cut(s)	669
NarI	GGCGCC	1 cut(s)	1049
NdeII	GATC	3 cut(s)	72, 128, 500
NgoMIV	GCCGGC	1 cut(s)	667
NlaIII	CATG	4 cut(s)	299, 653, 827, 979
NlaIV	GGNNCC	8 cut(s)	6, 7, 34, 107, 672, 809, 994, 1050
NmuCI	GTSAC	1 cut(s)	747
NspI	RCATGY	2 cut(s)	299, 979
NspV	TTCGAA	1 cut(s)	515
PctI	GAATGC	1 cut(s)	176
PdiI	GCCGGC	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	119, 220, 1028
PfoI	TCCNGGA	2 cut(s)	160, 536
PkrI	GCNGC	4 cut(s)	110, 319, 322, 792
PluTI	GGCGCC	1 cut(s)	1052
Ppu21I	YACGTR	1 cut(s)	832
PpuMI	RGGWCCY	1 cut(s)	5
PsiI	TTATAA	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	2 cut(s)	160, 536
PspEI	GGTNACC	1 cut(s)	747
PspGI	CCWGG	2 cut(s)	160, 536
PspN4I	GGNNCC	8 cut(s)	6, 7, 34, 107, 672, 809, 994, 1050
PspPI	GGNCC	2 cut(s)	5, 190
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	2 cut(s)	72, 128
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
SaqAI	TTAA	1 cut(s)	918
SatI	GCNGC	4 cut(s)	109, 318, 321, 791
Sau3AI	GATC	3 cut(s)	72, 128, 500
Sau96I	GGNCC	2 cut(s)	5, 190
ScrFI	CCNGG	2 cut(s)	162, 538
SfaNI	GCATC	3 cut(s)	267, 489, 594
SfoI	GGCGCC	1 cut(s)	1050
SfuI	TTCGAA	1 cut(s)	515
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	3 cut(s)	281, 529, 742
SmoI	CTYRAG	3 cut(s)	281, 529, 742
Sse9I	AATT	8 cut(s)	201, 335, 366, 393, 412, 795, 881, 902
SsiI	CCGC	2 cut(s)	109, 317
SspDI	GGCGCC	1 cut(s)	1048
SspMI	CTAG	3 cut(s)	126, 954, 1013
StyD4I	CCNGG	2 cut(s)	160, 536
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	2 cut(s)	218, 515
TasI	AATT	8 cut(s)	201, 335, 366, 393, 412, 795, 881, 902
TatI	WGTACW	1 cut(s)	580
TauI	GCSGC	2 cut(s)	111, 320
TfiI	GAWTC	3 cut(s)	119, 220, 1028
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TseFI	GTSAC	1 cut(s)	747
TseI	GCWGC	2 cut(s)	320, 790
Tsp45I	GTSAC	1 cut(s)	747
TspDTI	ATGAA	4 cut(s)	521, 553, 577, 912
TspGWI	ACGGA	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	902
XbaI	TCTAGA	1 cut(s)	1012
XceI	RCATGY	2 cut(s)	299, 979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	759
XspI	CTAG	3 cut(s)	126, 954, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.