FvH4_4g00430

Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
401845 .. 402884
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00430.t1

Sequence Viewer

Length: 288 bp
ATGGTTAGTGGTAATCTGTTTCATTGTATCAAGAATTCATGGCCTCCTCAGGAGTATATCCCCAGGAACACTTTGCAATTGTTTGACTTTGATAGTGCTGCCCCACCAGAACAAGCCTGGAGGAGGAAGTTAAACAGCCATGCTAACATTCTTAAAGAGTTTAGTATCACATTTAGGGAAGCAATCAAAATGATTTTTCTTACTTACATTTTGTCTCGTGGAGTCCATGATATCCTGGTGAACGCTTGTGGTCATACGTCAGAGAAGAGGCTTCCCATGGAAGGGTAA

Protein Analysis

96

Amino Acids

10.99

Weight (kDa)

8.71

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 34
AfiI CCNNNNNNNGG 3 cut(s) 123, 281, 282
AjnI CCWGG 3 cut(s) 62, 116, 234
Alw26I GTCTC 1 cut(s) 219
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 250
AxyI CCTNAGG 1 cut(s) 48
BauI CACGAG 1 cut(s) 216
BbvI GCAGC 1 cut(s) 85
BciT130I CCWGG 3 cut(s) 64, 118, 236
BcoDI GTCTC 1 cut(s) 219
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 3 cut(s) 64, 118, 236
BmrFI CCNGG 3 cut(s) 64, 118, 236
BpmI CTGGAG 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 62, 276
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 281, 282
Bse21I CCTNAGG 1 cut(s) 48
BseBI CCWGG 3 cut(s) 64, 118, 236
BseDI CCNNGG 2 cut(s) 62, 276
BseLI CCNNNNNNNGG 3 cut(s) 123, 281, 282
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 36, 136
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 43
BslI CCNNNNNNNGG 3 cut(s) 123, 281, 282
BsmAI GTCTC 1 cut(s) 219
BsnI GGCC 1 cut(s) 43
Bsp19I CCATGG 1 cut(s) 276
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 62, 276
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 3 cut(s) 64, 118, 236
Bst6I CTCTTC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 276
BstENI CCTNNNNNAGG 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 219
BstNI CCWGG 3 cut(s) 64, 118, 236
BstSCI CCNGG 3 cut(s) 62, 116, 234
BstV1I GCAGC 1 cut(s) 85
Bsu36I CCTNAGG 1 cut(s) 48
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 276
CviAII CATG 4 cut(s) 39, 140, 227, 277
CviJI RGCY 4 cut(s) 43, 116, 138, 271
CviKI_1 RGCY 4 cut(s) 43, 116, 138, 271
DdeI CTNAG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 276
Eco32I GATATC 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 34
EcoRII CCWGG 3 cut(s) 62, 116, 234
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 4 cut(s) 42, 143, 230, 280
FaiI YATR 6 cut(s) 40, 57, 141, 228, 255, 278
FatI CATG 4 cut(s) 38, 139, 226, 276
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 4 cut(s) 42, 143, 230, 280
HinfI GANTC 1 cut(s) 222
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 31, 50
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 257
Hsp92II CATG 4 cut(s) 42, 143, 230, 280
LpnPI CCDG 8 cut(s) 35, 49, 76, 103, 120, 130, 221, 248
Lsp1109I GCAGC 1 cut(s) 85
MaeII ACGT 1 cut(s) 257
MboII GAAGA 1 cut(s) 277
MfeI CAATTG 1 cut(s) 77
MluCI AATT 2 cut(s) 34, 77
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 5 cut(s) 54, 57, 114, 117, 261
MseI TTAA 2 cut(s) 131, 153
MspR9I CCNGG 3 cut(s) 64, 118, 236
MunI CAATTG 1 cut(s) 77
MvaI CCWGG 3 cut(s) 64, 118, 236
NcoI CCATGG 1 cut(s) 276
NlaIII CATG 4 cut(s) 42, 143, 230, 280
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Psp6I CCWGG 3 cut(s) 62, 116, 234
PspGI CCWGG 3 cut(s) 62, 116, 234
SaqAI TTAA 2 cut(s) 131, 153
SatI GCNGC 1 cut(s) 99
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 3 cut(s) 64, 118, 236
SetI ASST 1 cut(s) 260
Sse9I AATT 2 cut(s) 34, 77
StyD4I CCNGG 3 cut(s) 62, 116, 234
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 1 cut(s) 260
TasI AATT 2 cut(s) 34, 77
Tru1I TTAA 2 cut(s) 131, 153
Tru9I TTAA 2 cut(s) 131, 153
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 11, 27
XagI CCTNNNNNAGG 1 cut(s) 121
XapI RAATTY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.