Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010553

Physical Location & Seq

Genomic Coordinates Reverse (-)

12686324 .. 12689992

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011790

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGTGCTATAGATTTCCTCTCTCCATCACCTCCTTCAACTATTTTCCCCTCTCGATCTGTCATATTCTCTGCGGAATGCAACGCCATCCAAATGCGCCAATTTAGATGGAGGGAGTTGTTGGAGAAAGCCATGCTTGATAAATGTGAAGCATTGCTGGCTTTAGTAGCAGCTGTGCAGGGGAAGGAGTATGTCCTTGTGGTTGACTTAGATAATGTGGCTGCTAAAATTGACCCAACGCTCAATTCCTCTTTATCTTTGTGCACCTTAAGTGGATGTTCAGAAATTTTAGACCATCTGGTTGAAAAAGAGATAGACTACTGTATGGAGGTCACACCTACCTCCTTATATGATTCAGATTTGATTGGTTCACACCTACAGAAGTTTGAGCTTGCAGAAATAGCTCAGAATTCCGTCAAAGATTCGACGGAGAAATTCAAACTTGTCGATACTGGCAGCTTGTGGTTGAATGTTAGAGCCATTAAAAGGCTTTTGGATACAGATGAACTAAAGATTGAAGATTTCTCTGTTTCGAAGGAAACAGAGTCTGATCAAGTTCTTTTGCAAGAAACAGCAGTTGGTCTCTTAGAAGCAATCACCTGTTCAATTGCTTCATGTGCCATCACTCTCTTAGAAGCAATCAGTAGTTTAGTCGATTTTTGTGAGTGGAGTACTTTACCAAAGGAGGCTTGCAACAACACTAGAGTAATTGGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

240

Amino Acids

26.35

Weight (kDa)

4.46

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGP	PF01704	60 - 195	5.9e-15	UTP--glucose-1-phosphate uridylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00430
pyrus_communis	pycom420g00820
rosa_chinensis	RchiOBHm_Chr2g0163341
rosa_laevigata	RLG00000011790 RLG00000020219
rosa_multiflora	Rmu_sc0004112.1_g000025
rosa_samantha	Rh1DG076300 Rh2BG436700 Rh2BG436800 Rh2CG550700 Rh2DG446400 Rh3AG245300 Rh4CG120300 Rh5BG439600 Rh5CG230100 Rh5CG462400 Rh6AG254800 Rh6BG131500 Rh6DG117100
rosa_wichuraiana	Rw5G003000 Rw5G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AcsI	RAATTY	3 cut(s)	285, 409, 434
AfaI	GTAC	1 cut(s)	673
AfiI	CCNNNNNNNGG	1 cut(s)	486
AflII	CTTAAG	1 cut(s)	268
AgsI	TTSAA	6 cut(s)	39, 305, 439, 469, 518, 606
AjuI	GAANNNNNNNTTGG	4 cut(s)	229, 261, 561, 593
AluBI	AGCT	4 cut(s)	173, 391, 404, 459
AluI	AGCT	4 cut(s)	173, 391, 404, 459
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	587
Alw44I	GTGCAC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	548
ApaLI	GTGCAC	1 cut(s)	262
ApeKI	GCWGC	3 cut(s)	170, 221, 456
ApoI	RAATTY	3 cut(s)	285, 409, 434
AspLEI	GCGC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	21, 589
AsuII	TTCGAA	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	3 cut(s)	182, 208, 468
BccI	CCATC	5 cut(s)	34, 95, 102, 303, 629
BciVI	GTATCC	1 cut(s)	490
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	1 cut(s)	702
BfmI	CTRYAG	2 cut(s)	9, 377
BfrI	CTTAAG	1 cut(s)	268
BfuI	GTATCC	1 cut(s)	490
BisI	GCNGC	3 cut(s)	171, 222, 457
BlsI	GCNGC	3 cut(s)	172, 223, 458
BmcAI	AGTACT	1 cut(s)	673
Bpu14I	TTCGAA	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	587
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	152
BseGI	GGATG	2 cut(s)	87, 281
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMI	GCAATG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	457
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	3 cut(s)	182, 208, 468
BsgI	GTGCAG	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmAI	GTCTC	1 cut(s)	587
BsmI	GAATGC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	587
Bsp119I	TTCGAA	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	56, 550
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	418
BspT104I	TTCGAA	1 cut(s)	533
BspTI	CTTAAG	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	457
BssMI	GATC	2 cut(s)	56, 550
Bst4CI	ACNGT	1 cut(s)	323
BstAFI	CTTAAG	1 cut(s)	268
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	159, 393, 691
BstDEI	CTNAG	4 cut(s)	208, 405, 586, 631
BstF5I	GGATG	2 cut(s)	87, 281
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	59, 553
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	2 cut(s)	56, 550
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 167, 401, 617
BstSFI	CTRYAG	2 cut(s)	9, 377
BstSLI	GKGCMC	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	182, 208, 468
BsuI	GTATCC	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	87, 281
Cac8I	GCNNGC	3 cut(s)	159, 393, 691
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	672
CviAII	CATG	2 cut(s)	133, 615
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	4 cut(s)	208, 405, 586, 631
DpnI	GATC	2 cut(s)	58, 552
DpnII	GATC	2 cut(s)	56, 550
Eco31I	GGTCTC	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	409
FaeI	CATG	2 cut(s)	136, 618
FaiI	YATR	8 cut(s)	11, 65, 134, 192, 326, 349, 351, 616
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	2 cut(s)	132, 614
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	3 cut(s)	171, 222, 457
FokI	GGATG	2 cut(s)	74, 288
Fsp4HI	GCNGC	3 cut(s)	171, 222, 457
FspBI	CTAG	1 cut(s)	702
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	3 cut(s)	171, 222, 457
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	136, 618
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	3 cut(s)	353, 422, 545
HphI	GGTGA	2 cut(s)	21, 589
Hpy166II	GTNNAC	3 cut(s)	205, 264, 371
Hpy188I	TCNGA	4 cut(s)	283, 358, 408, 550
Hpy188III	TCNNGA	2 cut(s)	54, 717
Hpy8I	GTNNAC	3 cut(s)	205, 264, 371
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	3 cut(s)	45, 178, 529
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4V	TGCA	6 cut(s)	81, 178, 264, 395, 565, 693
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 167, 401, 617
HpyF3I	CTNAG	4 cut(s)	208, 405, 586, 631
Hsp92II	CATG	2 cut(s)	136, 618
HspAI	GCGC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	56, 550
LpnPI	CCDG	5 cut(s)	143, 164, 284, 438, 613
Lsp1109I	GCAGC	3 cut(s)	182, 208, 468
MaeI	CTAG	1 cut(s)	702
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	58, 552
MboI	GATC	2 cut(s)	56, 550
MboII	GAAGA	1 cut(s)	530
MfeI	CAATTG	1 cut(s)	606
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	8 cut(s)	101, 228, 244, 285, 409, 434, 606, 708
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	8 cut(s)	29, 42, 61, 105, 259, 322, 352, 679
MseI	TTAA	2 cut(s)	269, 483
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	173
MspCI	CTTAAG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	83
MwoI	GCNNNNNNNGC	4 cut(s)	158, 167, 401, 617
NdeII	GATC	2 cut(s)	56, 550
NlaIII	CATG	2 cut(s)	136, 618
NmuCI	GTSAC	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	533
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	353, 422
PkrI	GCNGC	3 cut(s)	172, 223, 458
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PstNI	CAGNNNCTG	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	269, 483
SatI	GCNGC	3 cut(s)	171, 222, 457
Sau3AI	GATC	2 cut(s)	56, 550
ScaI	AGTACT	1 cut(s)	673
SchI	GAGTC	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	266
SfcI	CTRYAG	2 cut(s)	9, 377
SfuI	TTCGAA	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	8 cut(s)	101, 228, 244, 285, 409, 434, 606, 708
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	702
TaaI	ACNGT	1 cut(s)	323
TaqI	TCGA	5 cut(s)	55, 425, 447, 533, 654
TasI	AATT	8 cut(s)	101, 228, 244, 285, 409, 434, 606, 708
TatI	WGTACW	1 cut(s)	671
TfiI	GAWTC	2 cut(s)	353, 422
Tru1I	TTAA	2 cut(s)	269, 483
Tru9I	TTAA	2 cut(s)	269, 483
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	170, 221, 456
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	519, 603
TspGWI	ACGGA	2 cut(s)	403, 443
Vha464I	CTTAAG	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	262
XapI	RAATTY	3 cut(s)	285, 409, 434
XspI	CTAG	1 cut(s)	702
ZrmI	AGTACT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.