Rmu_sc0004112.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004112.1
OG0010553
Physical Location & Seq
Reverse (-)
98286 .. 100246
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004112.1_g000025.1.cds

Sequence Viewer

Length: 651 bp
atggatttgggattgaaacggaaaatgttgaaatttggggataaatgcaataccaggtcgatgggttacccagaatttgtaactgttgatttagggaaaaggattggtactctggagttgagcattatgaaggatgttggtacttcttctcctccaaagagctcaaagagatggattacaaggaagaaaaccagaggtgaaaaggtgggtgatagaggagatgtaggtcatcagttgagattcctggcagtgatgacttggtgcttactttgttctagatttgaaccttttgttgctttgtgtatgatcagcaaagccaaattgtttgacttgcagggagcatccagctcaggagctcctgttgctgcttgtgatccaccttacatactagttgttcatggcccttccaggaggagactgttggcacagcttgtttctgctactagtgtctacaaaacccttgtcaagtacttggttggggttccgcaggttttactagattttgttcgccaaataaatgatgatgatgggcccatggaaaagcaacgacagcgttatggaccacctttgtacagccttacaactttggtgcttcttatccgtctggctattttgctatctcgggggcggtttgaaactagaaaattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.22

Weight (kDa)

10.05

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 450
AciI CCGC 2 cut(s) 485, 628
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 2 cut(s) 32, 74
AfaI GTAC 4 cut(s) 109, 142, 470, 572
AgsI TTSAA 4 cut(s) 16, 31, 284, 635
AhlI ACTAGT 2 cut(s) 388, 443
AjnI CCWGG 3 cut(s) 53, 243, 407
AluBI AGCT 4 cut(s) 162, 348, 356, 430
AluI AGCT 4 cut(s) 162, 348, 356, 430
Alw21I GWGCWC 2 cut(s) 164, 358
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 621
AoxI GGCC 2 cut(s) 400, 530
ApaI GGGCCC 1 cut(s) 534
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 2 cut(s) 32, 74
ArsI GACNNNNNNTTYG 2 cut(s) 447, 479
AspS9I GGNCC 4 cut(s) 401, 530, 531, 560
AsuHPI GGTGA 2 cut(s) 209, 221
AvaI CYCGRG 1 cut(s) 621
AvaII GGWCC 1 cut(s) 560
BaeGI GKGCMC 1 cut(s) 534
BanII GRGCYC 3 cut(s) 164, 358, 534
Bbv12I GWGCWC 2 cut(s) 164, 358
BbvI GCAGC 1 cut(s) 352
BccI CCATC 3 cut(s) 55, 165, 521
BciT130I CCWGG 3 cut(s) 55, 245, 409
BclI TGATCA 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 409
BcuI ACTAGT 2 cut(s) 388, 443
BfaI CTAG 5 cut(s) 276, 389, 444, 497, 639
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 3 cut(s) 55, 245, 409
Bme18I GGWCC 1 cut(s) 560
BmeT110I CYCGRG 1 cut(s) 621
BmgT120I GGNCC 4 cut(s) 401, 530, 531, 560
BmiI GGNNCC 2 cut(s) 483, 532
BmrFI CCNGG 3 cut(s) 55, 245, 409
BmsI GCATC 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 534
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 345, 375
BseBI CCWGG 3 cut(s) 55, 245, 409
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 2 cut(s) 139, 341
BseMII CTCAG 1 cut(s) 363
BseRI GAGGAG 3 cut(s) 141, 231, 427
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 1 cut(s) 352
BshFI GGCC 2 cut(s) 402, 532
BsiHKAI GWGCWC 2 cut(s) 164, 358
BsiHKCI CYCGRG 1 cut(s) 621
BsmAI GTCTC 1 cut(s) 409
BsnI GGCC 2 cut(s) 402, 532
BsoBI CYCGRG 1 cut(s) 621
Bsp120I GGGCCC 1 cut(s) 530
Bsp1286I GDGCHC 3 cut(s) 164, 358, 534
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 2 cut(s) 306, 373
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 2 cut(s) 485, 628
BspANI GGCC 2 cut(s) 402, 532
BspCNI CTCAG 1 cut(s) 362
BspLI GGNNCC 2 cut(s) 483, 532
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 1 cut(s) 368
BsrGI TGTACA 1 cut(s) 570
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 2 cut(s) 306, 373
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 3 cut(s) 55, 245, 409
Bst4CI ACNGT 2 cut(s) 85, 420
BstAUI TGTACA 1 cut(s) 570
BstDEI CTNAG 1 cut(s) 349
BstDSI CCRYGG 1 cut(s) 534
BstEII GGTNACC 1 cut(s) 65
BstF5I GGATG 2 cut(s) 139, 341
BstKTI GATC 2 cut(s) 309, 376
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 2 cut(s) 306, 373
BstMWI GCNNNNNNNGC 2 cut(s) 362, 550
BstNI CCWGG 3 cut(s) 55, 245, 409
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 3 cut(s) 53, 243, 407
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 61
BsuRI GGCC 2 cut(s) 402, 532
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 2 cut(s) 139, 341
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 478
Cfr13I GGNCC 4 cut(s) 401, 530, 531, 560
CsiI ACCWGGT 1 cut(s) 53
Csp6I GTAC 4 cut(s) 108, 141, 469, 571
CviAII CATG 2 cut(s) 398, 535
CviJI RGCY 9 cut(s) 162, 317, 348, 356, 402, 430, 532, 576, 608
CviKI_1 RGCY 9 cut(s) 162, 317, 348, 356, 402, 430, 532, 576, 608
CviQI GTAC 4 cut(s) 108, 141, 469, 571
DdeI CTNAG 1 cut(s) 349
DpnI GATC 2 cut(s) 308, 375
DpnII GATC 2 cut(s) 306, 373
Ecl136II GAGCTC 2 cut(s) 162, 356
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 3 cut(s) 164, 358, 534
Eco47I GGWCC 1 cut(s) 560
Eco53kI GAGCTC 2 cut(s) 162, 356
Eco88I CYCGRG 1 cut(s) 621
Eco91I GGTNACC 1 cut(s) 65
EcoICRI GAGCTC 2 cut(s) 162, 356
EcoO65I GGTNACC 1 cut(s) 65
EcoRII CCWGG 3 cut(s) 53, 243, 407
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 3 cut(s) 164, 358, 534
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 2 cut(s) 401, 538
FaiI YATR 6 cut(s) 128, 305, 386, 399, 536, 558
FatI CATG 2 cut(s) 397, 534
FbaI TGATCA 1 cut(s) 306
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 1 cut(s) 366
FokI GGATG 2 cut(s) 146, 328
FriOI GRGCYC 3 cut(s) 164, 358, 534
Fsp4HI GCNGC 1 cut(s) 366
FspBI CTAG 5 cut(s) 276, 389, 444, 497, 639
GluI GCNGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 2 cut(s) 402, 532
Hin1II CATG 2 cut(s) 401, 538
HinfI GANTC 1 cut(s) 240
HphI GGTGA 2 cut(s) 209, 221
Hpy166II GTNNAC 1 cut(s) 451
Hpy188III TCNNGA 3 cut(s) 113, 276, 351
Hpy8I GTNNAC 1 cut(s) 451
HpyAV CCTTC 2 cut(s) 124, 414
HpyCH4III ACNGT 2 cut(s) 85, 420
HpyCH4V TGCA 2 cut(s) 48, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 550
HpyF3I CTNAG 1 cut(s) 349
Hsp92II CATG 2 cut(s) 401, 538
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 2 cut(s) 306, 373
LmnI GCTCC 3 cut(s) 338, 353, 361
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 1 cut(s) 350
MabI ACCWGGT 1 cut(s) 53
MaeI CTAG 5 cut(s) 276, 389, 444, 497, 639
MaeIII GTNAC 2 cut(s) 65, 79
MalI GATC 2 cut(s) 308, 375
MboI GATC 2 cut(s) 306, 373
MboII GAAGA 2 cut(s) 138, 196
MhlI GDGCHC 3 cut(s) 164, 358, 534
MluCI AATT 4 cut(s) 32, 74, 320, 644
MnlI CCTC 4 cut(s) 162, 188, 209, 405
MspR9I CCNGG 3 cut(s) 55, 245, 409
MvaI CCWGG 3 cut(s) 55, 245, 409
MwoI GCNNNNNNNGC 2 cut(s) 362, 550
NcoI CCATGG 1 cut(s) 534
NdeII GATC 2 cut(s) 306, 373
NlaIII CATG 2 cut(s) 401, 538
NlaIV GGNNCC 2 cut(s) 483, 532
PfeI GAWTC 1 cut(s) 240
PfoI TCCNGGA 1 cut(s) 407
PkrI GCNGC 1 cut(s) 367
Psp124BI GAGCTC 2 cut(s) 164, 358
Psp6I CCWGG 3 cut(s) 53, 243, 407
PspEI GGTNACC 1 cut(s) 65
PspGI CCWGG 3 cut(s) 53, 243, 407
PspN4I GGNNCC 2 cut(s) 483, 532
PspOMI GGGCCC 1 cut(s) 530
PspPI GGNCC 4 cut(s) 401, 530, 531, 560
RsaI GTAC 4 cut(s) 109, 142, 470, 572
RsaNI GTAC 4 cut(s) 108, 141, 469, 571
SacI GAGCTC 2 cut(s) 164, 358
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 2 cut(s) 306, 373
Sau96I GGNCC 4 cut(s) 401, 530, 531, 560
ScaI AGTACT 1 cut(s) 470
ScrFI CCNGG 3 cut(s) 55, 245, 409
SduI GDGCHC 3 cut(s) 164, 358, 534
SexAI ACCWGGT 1 cut(s) 53
SfaNI GCATC 1 cut(s) 350
SinI GGWCC 1 cut(s) 560
SpeI ACTAGT 2 cut(s) 388, 443
Sse9I AATT 4 cut(s) 32, 74, 320, 644
SsiI CCGC 2 cut(s) 485, 628
SspMI CTAG 5 cut(s) 276, 389, 444, 497, 639
SstI GAGCTC 2 cut(s) 164, 358
StyD4I CCNGG 3 cut(s) 53, 243, 407
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 2 cut(s) 85, 420
TaqI TCGA 1 cut(s) 59
TasI AATT 4 cut(s) 32, 74, 320, 644
TatI WGTACW 2 cut(s) 468, 570
TfiI GAWTC 1 cut(s) 240
TscAI CASTG 1 cut(s) 255
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 143, 386
TspGWI ACGGA 2 cut(s) 34, 590
TspRI CASTG 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 2 cut(s) 32, 74
XbaI TCTAGA 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 5 cut(s) 276, 389, 444, 497, 639
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.