Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010553

Physical Location & Seq

Genomic Coordinates Forward (+)

15570624 .. 15573735

Gene Structure 3112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG117100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGATTTGGGATTGAAAGGGAAAATGTTGAAATTTGGGGATAAATGCAATACCAGGTCGATGGGTTACCGAGAATTTGTAATTGTTGATTTAGGGAAGAGGATTGATACTCTGGAGCTGAGCACTATGGAGGATGTTGGTACTTCTTCTGCTCCAAAGAGCTCAAAGAGATGGATTACGAGGAAGAAAACCAGAGCAAAGTTGCTTGCTTGTATACTTACTAGGGCAACAAGGGAACCAATCAAGACACCATGCTTGTTTGGAAGTTTCAATTGCAAGAACCCTGCAGGATACATTAGGGACATTCATTCTACTTTAGCCCATCATCCTGGGGTCTTCCAGAGGATGTACTTAACAAATGCTGCAGTTGTGAAGGAGGCCAATACACTAGGGATGATGTGGCCAAATAGGACACAACCGTTGCACCTGCAGTTAGAACAGTTTGATTTTTATAATGCTACCCCACCAAAACAACCCTGGAGGAGGAAGTTAAACAGCCATGCTAATCTTCTTAAAGAATTTAGTATTACATTTAGGAAGGCAATAAAGATGAAGTGGCAGCACCTCAAGAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0006082 GO:0006629 GO:0007275 GO:0007399 GO:0007417 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008422 GO:0009056 GO:0009987 GO:0015926 GO:0016020 GO:0016021 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019752 GO:0021953 GO:0021954 GO:0022008 GO:0030154 GO:0030182 GO:0031224 GO:0032501 GO:0032502 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044425 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0071704 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00511 ko00600 ko01100 map00511 map00600 map01100

Pfam Domains

Protein Families

DUF608 Glyco_hydr_116N

Protein Analysis

192

Amino Acids

22.24

Weight (kDa)

10.29

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00430
pyrus_communis	pycom420g00820
rosa_chinensis	RchiOBHm_Chr2g0163341
rosa_laevigata	RLG00000011790 RLG00000020219
rosa_multiflora	Rmu_sc0004112.1_g000025
rosa_samantha	Rh1DG076300 Rh2BG436700 Rh2BG436800 Rh2CG550700 Rh2DG446400 Rh3AG245300 Rh4CG120300 Rh5BG439600 Rh5CG230100 Rh5CG462400 Rh6AG254800 Rh6BG131500 Rh6DG117100
rosa_wichuraiana	Rw5G003000 Rw5G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AarI	CACCTGC	1 cut(s)	435
Acc36I	ACCTGC	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	401
AcsI	RAATTY	3 cut(s)	32, 74, 518
AfaI	GTAC	2 cut(s)	142, 350
AfiI	CCNNNNNNNGG	1 cut(s)	483
AgsI	TTSAA	3 cut(s)	16, 31, 271
AjnI	CCWGG	3 cut(s)	53, 328, 476
AluBI	AGCT	2 cut(s)	118, 162
AluI	AGCT	2 cut(s)	118, 162
Alw21I	GWGCWC	2 cut(s)	125, 164
AoxI	GGCC	2 cut(s)	378, 401
ApeKI	GCWGC	2 cut(s)	362, 559
ApoI	RAATTY	3 cut(s)	32, 74, 518
BalI	TGGCCA	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	328
Bbv12I	GWGCWC	2 cut(s)	125, 164
BbvI	GCAGC	2 cut(s)	349, 571
BccI	CCATC	3 cut(s)	55, 165, 330
BciT130I	CCWGG	3 cut(s)	55, 330, 478
BciVI	GTATCC	1 cut(s)	284
BfaI	CTAG	2 cut(s)	222, 389
BfmI	CTRYAG	3 cut(s)	285, 363, 428
BfuAI	ACCTGC	1 cut(s)	435
BfuI	GTATCC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	363, 560
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	2 cut(s)	364, 561
Bme1390I	CCNGG	3 cut(s)	55, 330, 478
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	3 cut(s)	55, 330, 478
BpiI	GAAGAC	1 cut(s)	328
BpmI	CTGGAG	2 cut(s)	134, 499
Bpu1102I	GCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	329, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
BseBI	CCWGG	3 cut(s)	55, 330, 478
BseDI	CCNNGG	2 cut(s)	329, 476
BseGI	GGATG	4 cut(s)	139, 325, 351, 399
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	496
BseXI	GCAGC	2 cut(s)	349, 571
BshFI	GGCC	2 cut(s)	380, 403
BsiHKAI	GWGCWC	2 cut(s)	125, 164
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	483
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	380, 403
Bsp1286I	GDGCHC	2 cut(s)	125, 164
Bsp1720I	GCTNAGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	380, 403
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	3 cut(s)	289, 367, 432
BspMI	ACCTGC	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	329, 476
BssNAI	GTATAC	1 cut(s)	215
Bst1107I	GTATAC	1 cut(s)	215
Bst2UI	CCWGG	3 cut(s)	55, 330, 478
Bst4CI	ACNGT	2 cut(s)	420, 441
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	119
BstEII	GGTNACC	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	481
BstF5I	GGATG	4 cut(s)	139, 325, 351, 399
BstNI	CCWGG	3 cut(s)	55, 330, 478
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	53, 328, 476
BstSFI	CTRYAG	3 cut(s)	285, 363, 428
BstV1I	GCAGC	2 cut(s)	349, 571
BstV2I	GAAGAC	1 cut(s)	328
BstXI	CCANNNNNNTGG	2 cut(s)	61, 329
BstZ17I	GTATAC	1 cut(s)	215
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	380, 403
BtsCI	GGATG	4 cut(s)	139, 325, 351, 399
BveI	ACCTGC	1 cut(s)	435
Cac8I	GCNNGC	1 cut(s)	207
CsiI	ACCWGGT	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	141, 349
CviAII	CATG	2 cut(s)	252, 500
CviJI	RGCY	6 cut(s)	118, 162, 320, 380, 403, 498
CviKI_1	RGCY	6 cut(s)	118, 162, 320, 380, 403, 498
CviQI	GTAC	2 cut(s)	141, 349
DdeI	CTNAG	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	401
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	162
EcoNI	CCTNNNNNAGG	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	3 cut(s)	53, 328, 476
EcoT38I	GRGCYC	1 cut(s)	164
FaeI	CATG	2 cut(s)	255, 503
FaiI	YATR	5 cut(s)	128, 215, 253, 453, 501
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	2 cut(s)	251, 499
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	363, 560
FokI	GGATG	4 cut(s)	146, 312, 358, 406
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	363, 560
FspBI	CTAG	2 cut(s)	222, 389
GluI	GCNGC	2 cut(s)	363, 560
GsuI	CTGGAG	2 cut(s)	134, 499
HaeIII	GGCC	2 cut(s)	380, 403
Hin1II	CATG	2 cut(s)	255, 503
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188III	TCNNGA	4 cut(s)	113, 244, 340, 568
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	367, 532
HpyCH4III	ACNGT	2 cut(s)	420, 441
HpyCH4V	TGCA	6 cut(s)	48, 276, 287, 365, 424, 430
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	255, 503
LmnI	GCTCC	2 cut(s)	115, 157
Lsp1109I	GCAGC	2 cut(s)	349, 571
MabI	ACCWGGT	1 cut(s)	53
MaeI	CTAG	2 cut(s)	222, 389
MaeIII	GTNAC	1 cut(s)	65
MboII	GAAGA	5 cut(s)	109, 138, 196, 328, 500
MfeI	CAATTG	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	125, 164
MlsI	TGGCCA	1 cut(s)	403
MluCI	AATT	5 cut(s)	32, 74, 81, 271, 518
MluNI	TGGCCA	1 cut(s)	403
MnlI	CCTC	9 cut(s)	93, 124, 174, 336, 370, 474, 477, 564, 575
Mox20I	TGGCCA	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	403
MseI	TTAA	3 cut(s)	353, 491, 513
Msp20I	TGGCCA	1 cut(s)	403
MspR9I	CCNGG	3 cut(s)	55, 330, 478
MunI	CAATTG	1 cut(s)	271
MvaI	CCWGG	3 cut(s)	55, 330, 478
NlaIII	CATG	2 cut(s)	255, 503
NlaIV	GGNNCC	1 cut(s)	237
PaqCI	CACCTGC	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	364, 561
PsiI	TTATAA	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	164
Psp6I	CCWGG	3 cut(s)	53, 328, 476
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	3 cut(s)	53, 328, 476
PspN4I	GGNNCC	1 cut(s)	237
PstI	CTGCAG	3 cut(s)	289, 367, 432
RsaI	GTAC	2 cut(s)	142, 350
RsaNI	GTAC	2 cut(s)	141, 349
SacI	GAGCTC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	353, 491, 513
SatI	GCNGC	2 cut(s)	363, 560
SbfI	CCTGCAGG	1 cut(s)	289
ScrFI	CCNGG	3 cut(s)	55, 330, 478
SdaI	CCTGCAGG	1 cut(s)	289
SduI	GDGCHC	2 cut(s)	125, 164
SetI	ASST	6 cut(s)	59, 120, 164, 429, 567, 575
SexAI	ACCWGGT	1 cut(s)	53
SfcI	CTRYAG	3 cut(s)	285, 363, 428
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse8387I	CCTGCAGG	1 cut(s)	289
Sse9I	AATT	5 cut(s)	32, 74, 81, 271, 518
SspMI	CTAG	2 cut(s)	222, 389
SstI	GAGCTC	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	53, 328, 476
TaaI	ACNGT	2 cut(s)	420, 441
TaqI	TCGA	1 cut(s)	59
TasI	AATT	5 cut(s)	32, 74, 81, 271, 518
TatI	WGTACW	1 cut(s)	348
Tru1I	TTAA	3 cut(s)	353, 491, 513
Tru9I	TTAA	3 cut(s)	353, 491, 513
TseI	GCWGC	2 cut(s)	362, 559
TspDTI	ATGAA	2 cut(s)	296, 566
XagI	CCTNNNNNAGG	1 cut(s)	481
XapI	RAATTY	3 cut(s)	32, 74, 518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	214
XspI	CTAG	2 cut(s)	222, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.