Rh6AG254800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010553
Physical Location & Seq
Forward (+)
44485341 .. 44487594
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG254800.1

Sequence Viewer

Length: 603 bp
ATGGCGGCAGCAAAGTTGCTTACTTGTATACTTAGTAGGGCAAGAAGGGAACCAATCAAGATGTCATGCTTGTTTGGAAGGGAGCATCCAGCTCAGGAGCTCCTGGGGGAAACTTATCAACCAGATCAAGGAAAACTAAGGAAATGCTACCAACGAAATTCAGCAGCTAAAGCTAAAAGAAATGTCATTCCCTCTCGATCAAGTCCTGATGGTGCTCAGCTTGCTACTGTTTTCACTCACCTGCATCATAAGTTCAATACGACCTTGAAGTCATTAGAATCGTTTCAAGCTAAGAACTCTGAGCGTATGTTCAATACAGATTTTGTTCGCCAAATAAATGATGATGATGGGCCCATGGAAGAGCAACGACAGCGTTATGGACCACCTTTGTACAGCCTTACAACTTTGGTGCTTCTTATACGTCTGGCTATTTTGTTGTCTCGGGGGCGGTTTGAAACTAGAAAATTAAACAAGCAAGAGGTAGCTGTGTTGGAACAATCTGTTGACATCTACACCACTGAGTTTGAAAGTTTATTAGGTTTATCAGTGAGGTTTTTGCGAATTCGCCCTTCTTTATTTCAGCAGAGGTTGCTGGTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

23.05

Weight (kDa)

9.91

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 249
AasI GACNNNNNNGTC 1 cut(s) 268
Acc36I ACCTGC 1 cut(s) 249
AccI GTMKAC 1 cut(s) 28
AciI CCGC 2 cut(s) 5, 448
AcsI RAATTY 2 cut(s) 157, 561
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 6 cut(s) 256, 268, 287, 313, 455, 527
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 7 cut(s) 92, 100, 167, 173, 220, 290, 485
AluI AGCT 7 cut(s) 92, 100, 167, 173, 220, 290, 485
Alw21I GWGCWC 2 cut(s) 102, 217
Alw26I GTCTC 1 cut(s) 444
Ama87I CYCGRG 1 cut(s) 441
AoxI GGCC 1 cut(s) 350
ApaI GGGCCC 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 8, 164
ApoI RAATTY 2 cut(s) 157, 561
Asp700I GAANNNNTTC 1 cut(s) 282
AspS9I GGNCC 3 cut(s) 350, 351, 380
AsuHPI GGTGA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 441
AvaII GGWCC 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 354
BanII GRGCYC 2 cut(s) 102, 354
Bbv12I GWGCWC 2 cut(s) 102, 217
BbvI GCAGC 2 cut(s) 20, 176
BccI CCATC 2 cut(s) 203, 341
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 459
BfuAI ACCTGC 1 cut(s) 249
BisI GCNGC 3 cut(s) 6, 9, 165
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 3 cut(s) 7, 10, 166
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 380
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 3 cut(s) 350, 351, 380
BmiI GGNNCC 2 cut(s) 51, 352
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 2 cut(s) 94, 253
Bpu10I CCTNAGC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 103, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 103, 354
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 4 cut(s) 107, 230, 291, 510
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 2 cut(s) 20, 176
BshFI GGCC 1 cut(s) 352
BsiHKAI GWGCWC 2 cut(s) 102, 217
BsiHKCI CYCGRG 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 444
BsnI GGCC 1 cut(s) 352
BsoBI CYCGRG 1 cut(s) 441
Bsp120I GGGCCC 1 cut(s) 350
Bsp1286I GDGCHC 3 cut(s) 102, 217, 354
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 2 cut(s) 124, 197
Bsp1720I GCTNAGC 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 2 cut(s) 5, 448
BspANI GGCC 1 cut(s) 352
BspCNI CTCAG 4 cut(s) 106, 229, 292, 511
BspLI GGNNCC 2 cut(s) 51, 352
BspMI ACCTGC 1 cut(s) 249
BspQI GCTCTTC 1 cut(s) 354
BsrGI TGTACA 1 cut(s) 390
BssECI CCNNGG 2 cut(s) 103, 354
BssMI GATC 2 cut(s) 124, 197
BssNAI GTATAC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 354
Bst1107I GTATAC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 589
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 7 cut(s) 32, 93, 137, 216, 291, 300, 519
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 2 cut(s) 127, 200
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 2 cut(s) 124, 197
BstMWI GCNNNNNNNGC 4 cut(s) 170, 221, 370, 589
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 20, 176
BstZ17I GTATAC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 2 cut(s) 516, 552
BveI ACCTGC 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 222
Cfr13I GGNCC 3 cut(s) 350, 351, 380
Csp6I GTAC 1 cut(s) 391
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 2 cut(s) 66, 355
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 7 cut(s) 32, 93, 137, 216, 291, 300, 519
DpnI GATC 2 cut(s) 126, 199
DpnII GATC 2 cut(s) 124, 197
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 2 cut(s) 102, 354
Eco47I GGWCC 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 441
EcoICRI GAGCTC 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 354
EcoT38I GRGCYC 2 cut(s) 102, 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 2 cut(s) 69, 358
FaiI YATR 7 cut(s) 29, 67, 249, 308, 356, 378, 419
FatI CATG 2 cut(s) 65, 354
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 3 cut(s) 6, 9, 165
FokI GGATG 1 cut(s) 72
FriOI GRGCYC 2 cut(s) 102, 354
Fsp4HI GCNGC 3 cut(s) 6, 9, 165
FspBI CTAG 1 cut(s) 459
GluI GCNGC 3 cut(s) 6, 9, 165
HaeIII GGCC 1 cut(s) 352
Hin1II CATG 2 cut(s) 69, 358
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 1 cut(s) 278
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 2 cut(s) 29, 505
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 4 cut(s) 58, 95, 195, 206
Hpy8I GTNNAC 2 cut(s) 29, 505
HpyAV CCTTC 3 cut(s) 39, 72, 579
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 2 cut(s) 244, 598
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 221, 370, 589
HpyF3I CTNAG 7 cut(s) 32, 93, 137, 216, 291, 300, 519
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 2 cut(s) 69, 358
Kzo9I GATC 2 cut(s) 124, 197
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 3 cut(s) 82, 97, 105
LpnPI CCDG 9 cut(s) 80, 89, 102, 116, 135, 219, 254, 410, 578
Lsp1109I GCAGC 2 cut(s) 20, 176
LweI GCATC 2 cut(s) 94, 253
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 421
MalI GATC 2 cut(s) 126, 199
MboI GATC 2 cut(s) 124, 197
MboII GAAGA 1 cut(s) 371
MhlI GDGCHC 3 cut(s) 102, 217, 354
MluCI AATT 3 cut(s) 157, 464, 561
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 4 cut(s) 202, 472, 543, 579
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 4 cut(s) 170, 221, 370, 589
NcoI CCATGG 1 cut(s) 354
NdeII GATC 2 cut(s) 124, 197
NlaIII CATG 2 cut(s) 69, 358
NlaIV GGNNCC 2 cut(s) 51, 352
PaqCI CACCTGC 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 7, 10, 166
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 51, 352
PspOMI GGGCCC 1 cut(s) 350
PspPI GGNCC 3 cut(s) 350, 351, 380
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SacI GAGCTC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 3 cut(s) 6, 9, 165
Sau3AI GATC 2 cut(s) 124, 197
Sau96I GGNCC 3 cut(s) 350, 351, 380
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 3 cut(s) 102, 217, 354
SfaNI GCATC 2 cut(s) 94, 253
SinI GGWCC 1 cut(s) 380
Sse9I AATT 3 cut(s) 157, 464, 561
SsiI CCGC 2 cut(s) 5, 448
SspMI CTAG 1 cut(s) 459
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 424
TaqI TCGA 1 cut(s) 196
TasI AATT 3 cut(s) 157, 464, 561
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 2 cut(s) 523, 552
TseI GCWGC 2 cut(s) 8, 164
TspRI CASTG 2 cut(s) 523, 552
VpaK11BI GGWCC 1 cut(s) 380
XapI RAATTY 2 cut(s) 157, 561
XmiI GTMKAC 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.