Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010553

Physical Location & Seq

Genomic Coordinates Reverse (-)

19009282 .. 19012087

Gene Structure 2806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCCCTTGTGGTTGACTCAGATAATGTGGCTGCTAAAATTGACCCAAGTCACACCTACCTCCTCATATGATTCAGATTTGATTGGTTCACGCCTACAGAAGTTTGAGCTTGCAGAAATAGCTCAGAATTCCGTCAAAGATTCGACGGAGAAATTCAAACTTGTCGATACTGGCAGCTTGTGGTTGAATGTTAGAGCCATTGAAGATTTCTCTGTTTCGAAGGAAACAGAGTCTGATCAAGTTCTTTTGCAAGAAACAGCAGTTGGTGCGATGGTCAGATTCCGGGTAGACCCAGGAGGTCAGATATGGAAACATGCGCAGAGAGGCGGTCTAGGAGTGAAGATACTGAGATGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

119

Amino Acids

13.48

Weight (kDa)

6.57

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00430
pyrus_communis	pycom420g00820
rosa_chinensis	RchiOBHm_Chr2g0163341
rosa_laevigata	RLG00000011790 RLG00000020219
rosa_multiflora	Rmu_sc0004112.1_g000025
rosa_samantha	Rh1DG076300 Rh2BG436700 Rh2BG436800 Rh2CG550700 Rh2DG446400 Rh3AG245300 Rh4CG120300 Rh5BG439600 Rh5CG230100 Rh5CG462400 Rh6AG254800 Rh6BG131500 Rh6DG117100
rosa_wichuraiana	Rw5G003000 Rw5G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	127, 152
AgsI	TTSAA	3 cut(s)	157, 187, 203
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	3 cut(s)	109, 122, 177
AluI	AGCT	3 cut(s)	109, 122, 177
AlwNI	CAGNNNCTG	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	31, 174
ApoI	RAATTY	2 cut(s)	127, 152
AspLEI	GCGC	1 cut(s)	319
AsuC2I	CCSGG	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	18, 186
BccI	CCATC	2 cut(s)	265, 345
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	284
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	95
BisI	GCNGC	2 cut(s)	32, 175
BlsI	GCNGC	2 cut(s)	33, 176
Bme1390I	CCNGG	2 cut(s)	284, 294
BmrFI	CCNGG	2 cut(s)	284, 294
BoxI	GACNNNNGTC	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	292
BseMII	CTCAG	3 cut(s)	32, 137, 338
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	18, 186
BsiSI	CCGG	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	327
BspCNI	CTCAG	3 cut(s)	31, 136, 339
BspT104I	TTCGAA	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	18, 123, 347
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 266
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	317
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	282, 292
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	18, 186
BtgZI	GCGATG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	319
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	5 cut(s)	31, 109, 122, 177, 197
CviKI_1	RGCY	5 cut(s)	31, 109, 122, 177, 197
DdeI	CTNAG	3 cut(s)	18, 123, 347
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	317
FaiI	YATR	4 cut(s)	67, 69, 307, 315
FatI	CATG	1 cut(s)	313
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	32, 175
Fsp4HI	GCNGC	2 cut(s)	32, 175
FspBI	CTAG	1 cut(s)	332
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	2 cut(s)	32, 175
HapII	CCGG	1 cut(s)	283
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	5 cut(s)	16, 71, 140, 230, 279
HpaII	CCGG	1 cut(s)	283
Hpy166II	GTNNAC	3 cut(s)	15, 89, 289
Hpy188I	TCNGA	6 cut(s)	21, 76, 126, 235, 278, 303
Hpy8I	GTNNAC	3 cut(s)	15, 89, 289
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	113, 250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 266
HpyF3I	CTNAG	3 cut(s)	18, 123, 347
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	235
LpnPI	CCDG	4 cut(s)	156, 279, 296, 306
Lsp1109I	GCAGC	2 cut(s)	18, 186
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	215, 352
MluCI	AATT	3 cut(s)	38, 127, 152
MlyI	GAGTC	2 cut(s)	10, 239
MnlI	CCTC	4 cut(s)	70, 73, 290, 317
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	2 cut(s)	284, 294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	119, 266
NciI	CCSGG	1 cut(s)	284
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	49
NsbI	TGCGCA	1 cut(s)	318
NspI	RCATGY	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	71, 140, 279
PkrI	GCNGC	2 cut(s)	33, 176
PleI	GAGTC	2 cut(s)	10, 238
PpsI	GAGTC	2 cut(s)	10, 238
PshAI	GACNNNNGTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	233
SatI	GCNGC	2 cut(s)	32, 175
Sau3AI	GATC	1 cut(s)	235
SchI	GAGTC	2 cut(s)	10, 239
ScrFI	CCNGG	2 cut(s)	284, 294
SetI	ASST	6 cut(s)	58, 62, 111, 124, 179, 301
SfcI	CTRYAG	1 cut(s)	95
SfuI	TTCGAA	1 cut(s)	218
Sse9I	AATT	3 cut(s)	38, 127, 152
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	282, 292
TaqI	TCGA	3 cut(s)	143, 165, 218
TasI	AATT	3 cut(s)	38, 127, 152
TfiI	GAWTC	3 cut(s)	71, 140, 279
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	31, 174
Tsp45I	GTSAC	1 cut(s)	49
TspGWI	ACGGA	2 cut(s)	121, 161
XapI	RAATTY	2 cut(s)	127, 152
XceI	RCATGY	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.