Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0010553

Physical Location & Seq

Genomic Coordinates Forward (+)

1075487 .. 1078243

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom420g00820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTCAGTGGGCATTTGTTCCCTTGTAGAAAGAATTCATGGCCGCCTGAGGAGTATATCAGCGGAAACACTTTGCACCTGTTTGATTTTGATAGTGCTGCCCCACCAGAACATGCCTGGAGGAGGAAGTTAAACAGCAATGCTAATCTTCTCAGAGAATTTAGTGTTACATTTAGGGAAGCCATAAAGATGGTTAGGTTAGGTATACGCTTGTGGTCATACGTTAGGGAAGAGGCTTCTCATGGAAGGGCAGAAAGCACCCATTTACCCTTTTACTTGAGAAAGTTGCAAGCCATCTGCATCTCAGGGGGTTCCACTTGGAGGGATGGGGTATTGGCAGCATTTCTAGAGGTTTTAGAGGTGAATTCAGGCAATGGCAAATCATTCCTGGTATATGTGAAGGTTCTCCCTTCATGGCCAATCAATTCTCTATTTTTATATCTAGAGAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0006082 GO:0006629 GO:0007275 GO:0007399 GO:0007417 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008422 GO:0009056 GO:0009987 GO:0015926 GO:0016020 GO:0016021 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019752 GO:0021953 GO:0021954 GO:0022008 GO:0030154 GO:0030182 GO:0031224 GO:0032501 GO:0032502 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044425 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0071704 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00511 ko00600 ko01100 map00511 map00600 map01100

Pfam Domains

Protein Families

DUF608 Glyco_hydr_116N

Protein Analysis

152

Amino Acids

17.31

Weight (kDa)

8.62

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00430
pyrus_communis	pycom420g00820
rosa_chinensis	RchiOBHm_Chr2g0163341
rosa_laevigata	RLG00000011790 RLG00000020219
rosa_multiflora	Rmu_sc0004112.1_g000025
rosa_samantha	Rh1DG076300 Rh2BG436700 Rh2BG436800 Rh2CG550700 Rh2DG446400 Rh3AG245300 Rh4CG120300 Rh5BG439600 Rh5CG230100 Rh5CG462400 Rh6AG254800 Rh6BG131500 Rh6DG117100
rosa_wichuraiana	Rw5G003000 Rw5G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	205
AciI	CCGC	2 cut(s)	44, 63
AcoI	YGGCCR	2 cut(s)	41, 416
AcsI	RAATTY	3 cut(s)	34, 158, 364
AfiI	CCNNNNNNNGG	2 cut(s)	123, 321
AjnI	CCWGG	2 cut(s)	116, 387
AoxI	GGCC	2 cut(s)	41, 416
ApeKI	GCWGC	2 cut(s)	98, 338
ApoI	RAATTY	3 cut(s)	34, 158, 364
Asp700I	GAANNNNTTC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	373
AxyI	CCTNAGG	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	85, 350
BccI	CCATC	3 cut(s)	184, 302, 320
BciT130I	CCWGG	2 cut(s)	118, 389
BfaI	CTAG	2 cut(s)	347, 443
BisI	GCNGC	3 cut(s)	44, 99, 339
BlsI	GCNGC	3 cut(s)	45, 100, 340
Bme1390I	CCNGG	2 cut(s)	118, 389
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	2 cut(s)	118, 389
BmsI	GCATC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 321
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	2 cut(s)	145, 379
BseBI	CCWGG	2 cut(s)	118, 389
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	2 cut(s)	123, 321
BseMI	GCAATG	2 cut(s)	145, 379
BseMII	CTCAG	3 cut(s)	39, 166, 318
BseRI	GAGGAG	2 cut(s)	65, 136
BseXI	GCAGC	2 cut(s)	85, 350
BshFI	GGCC	2 cut(s)	43, 418
BslI	CCNNNNNNNGG	2 cut(s)	123, 321
BsnI	GGCC	2 cut(s)	43, 418
BspACI	CCGC	2 cut(s)	44, 63
BspANI	GGCC	2 cut(s)	43, 418
BspCNI	CTCAG	3 cut(s)	40, 165, 317
BspLI	GGNNCC	1 cut(s)	313
BsrDI	GCAATG	2 cut(s)	145, 379
BssNAI	GTATAC	1 cut(s)	206
Bst1107I	GTATAC	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	118, 389
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	3 cut(s)	48, 152, 304
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	331
BstNI	CCWGG	2 cut(s)	118, 389
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	116, 387
BstV1I	GCAGC	2 cut(s)	85, 350
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstZ17I	GTATAC	1 cut(s)	206
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	43, 418
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	291
CviAII	CATG	4 cut(s)	39, 113, 242, 414
CviJI	RGCY	5 cut(s)	43, 182, 236, 293, 418
CviKI_1	RGCY	5 cut(s)	43, 182, 236, 293, 418
DdeI	CTNAG	3 cut(s)	48, 152, 304
EaeI	YGGCCR	2 cut(s)	41, 416
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRI	GAATTC	2 cut(s)	34, 364
EcoRII	CCWGG	2 cut(s)	116, 387
FaeI	CATG	4 cut(s)	42, 116, 245, 417
FatI	CATG	4 cut(s)	38, 112, 241, 413
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	3 cut(s)	44, 99, 339
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	44, 99, 339
FspBI	CTAG	2 cut(s)	347, 443
GluI	GCNGC	3 cut(s)	44, 99, 339
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	43, 418
Hin1II	CATG	4 cut(s)	42, 116, 245, 417
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	155
Hpy188III	TCNNGA	2 cut(s)	347, 443
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	240, 394, 420
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	76, 289, 300
HpyF3I	CTNAG	3 cut(s)	48, 152, 304
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	42, 116, 245, 417
LpnPI	CCDG	9 cut(s)	60, 92, 103, 120, 130, 291, 354, 374, 401
Lsp1109I	GCAGC	2 cut(s)	85, 350
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	2 cut(s)	347, 443
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	140, 242
MlsI	TGGCCA	1 cut(s)	418
MluCI	AATT	4 cut(s)	34, 158, 364, 424
MluNI	TGGCCA	1 cut(s)	418
MnlI	CCTC	7 cut(s)	43, 114, 117, 226, 315, 343, 352
Mox20I	TGGCCA	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	418
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	418
MspA1I	CMGCKG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	118, 389
MvaI	CCWGG	2 cut(s)	118, 389
NlaIII	CATG	4 cut(s)	42, 116, 245, 417
NlaIV	GGNNCC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	45, 100, 340
Psp6I	CCWGG	2 cut(s)	116, 387
PspGI	CCWGG	2 cut(s)	116, 387
PspN4I	GGNNCC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	3 cut(s)	44, 99, 339
ScrFI	CCNGG	2 cut(s)	118, 389
SetI	ASST	7 cut(s)	81, 200, 205, 225, 354, 363, 405
SfaNI	GCATC	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	4 cut(s)	34, 158, 364, 424
SsiI	CCGC	2 cut(s)	44, 63
SspMI	CTAG	2 cut(s)	347, 443
StyD4I	CCNGG	2 cut(s)	116, 387
TaiI	ACGT	1 cut(s)	225
TasI	AATT	4 cut(s)	34, 158, 364, 424
TauI	GCSGC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	2 cut(s)	98, 338
TspDTI	ATGAA	2 cut(s)	27, 402
TspRI	CASTG	1 cut(s)	13
XagI	CCTNNNNNAGG	1 cut(s)	121
XapI	RAATTY	3 cut(s)	34, 158, 364
XbaI	TCTAGA	2 cut(s)	346, 442
XceI	RCATGY	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	2 cut(s)	347, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.