Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010553

Physical Location & Seq

Genomic Coordinates Reverse (-)

61882999 .. 61891618

Gene Structure 8620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG436800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACAAAAGAGGCCTTACATGTCAAATACCAACATACGCTTTCTTCCACCCCTACTCTGCAGGGGAAGGAGTATGTCCTTGTGGTTGACTCAGATAATGTGGCTGCTAAAATTGACCCAAAAATTTTAGACCATCTGGTTGAAAAAGAGATAGACTACTGTATGGAGGTCACACCTACCTCCTCATATGATTCAGATTTGATTGGTTCACGCCTACAGAAGTTTGAGCTTGCAGAAATAGCTCAATATTCCGTCAAAGATTCGACGGAGAAATTCAAACTTGTCGATACTGGCAGCTTGTTTGATTTAAGTTCTTGGCTATTTCCAGGTTACCCAGAATTTGTAATTGTTGATTTAGGGAAGAGGATTGGTACTCTGGAGTTGAGCATTATGAAGGATGTTGGTACTTCTTCTCCTCCAAAGAGCTCAAAGAGATGGATTACAAGGAAGAAAACCAGAGGTGAAAAGGTGGGTGATAGAGGAGATGTAGGTCATCAGTTGAGATTCCTGGCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

172

Amino Acids

19.28

Weight (kDa)

6.43

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGP	PF01704	21 - 101	3.8e-12	UTP--glucose-1-phosphate uridylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00430
pyrus_communis	pycom420g00820
rosa_chinensis	RchiOBHm_Chr2g0163341
rosa_laevigata	RLG00000011790 RLG00000020219
rosa_multiflora	Rmu_sc0004112.1_g000025
rosa_samantha	Rh1DG076300 Rh2BG436700 Rh2BG436800 Rh2CG550700 Rh2DG446400 Rh3AG245300 Rh4CG120300 Rh5BG439600 Rh5CG230100 Rh5CG462400 Rh6AG254800 Rh6BG131500 Rh6DG117100
rosa_wichuraiana	Rw5G003000 Rw5G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	503
AcsI	RAATTY	3 cut(s)	123, 272, 338
AfaI	GTAC	2 cut(s)	373, 406
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	143, 277
AjnI	CCWGG	2 cut(s)	325, 507
AluBI	AGCT	4 cut(s)	229, 242, 297, 426
AluI	AGCT	4 cut(s)	229, 242, 297, 426
Alw21I	GWGCWC	1 cut(s)	428
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	104, 294
ApoI	RAATTY	3 cut(s)	123, 272, 338
AsuHPI	GGTGA	2 cut(s)	473, 485
BanII	GRGCYC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	91, 306
BccI	CCATC	2 cut(s)	141, 429
BciT130I	CCWGG	2 cut(s)	327, 509
BfmI	CTRYAG	2 cut(s)	59, 215
BfuAI	ACCTGC	1 cut(s)	503
BisI	GCNGC	2 cut(s)	105, 295
BlsI	GCNGC	2 cut(s)	106, 296
Bme1390I	CCNGG	2 cut(s)	327, 509
BmrFI	CCNGG	2 cut(s)	327, 509
BpmI	CTGGAG	1 cut(s)	398
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	327, 509
BseGI	GGATG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	3 cut(s)	172, 405, 495
BseXI	GCAGC	2 cut(s)	91, 306
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	428
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	104
BspMAI	CTGCAG	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	327, 509
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	91
BstEII	GGTNACC	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	2 cut(s)	327, 509
BstNSI	RCATGY	1 cut(s)	23
BstPI	GGTNACC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	325, 507
BstSFI	CTRYAG	2 cut(s)	59, 215
BstV1I	GCAGC	2 cut(s)	91, 306
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	403
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	372, 405
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	7 cut(s)	14, 104, 229, 242, 297, 319, 426
CviKI_1	RGCY	7 cut(s)	14, 104, 229, 242, 297, 319, 426
CviQI	GTAC	2 cut(s)	372, 405
DdeI	CTNAG	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	426
Eco147I	AGGCCT	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	426
Eco91I	GGTNACC	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	426
EcoO65I	GGTNACC	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	325, 507
EcoT38I	GRGCYC	1 cut(s)	428
FaeI	CATG	1 cut(s)	23
FaiI	YATR	7 cut(s)	21, 36, 75, 164, 187, 189, 392
FatI	CATG	1 cut(s)	19
FauNDI	CATATG	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	105, 295
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	2 cut(s)	105, 295
GluI	GCNGC	2 cut(s)	105, 295
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	4 cut(s)	89, 191, 260, 504
HphI	GGTGA	2 cut(s)	473, 485
Hpy166II	GTNNAC	2 cut(s)	88, 209
Hpy188I	TCNGA	2 cut(s)	94, 196
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	2 cut(s)	88, 209
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	61, 388
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	61, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	23
Lsp1109I	GCAGC	2 cut(s)	91, 306
MaeIII	GTNAC	2 cut(s)	169, 329
MboII	GAAGA	4 cut(s)	36, 373, 402, 460
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	5 cut(s)	111, 123, 272, 338, 345
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	8 cut(s)	4, 160, 190, 193, 357, 426, 452, 473
MseI	TTAA	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	327, 509
MvaI	CCWGG	2 cut(s)	327, 509
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeI	CATATG	1 cut(s)	187
NlaIII	CATG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	23
PceI	AGGCCT	1 cut(s)	14
PciI	ACATGT	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	191, 260, 504
PkrI	GCNGC	2 cut(s)	106, 296
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PscI	ACATGT	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	428
Psp6I	CCWGG	2 cut(s)	325, 507
PspEI	GGTNACC	1 cut(s)	329
PspGI	CCWGG	2 cut(s)	325, 507
PstI	CTGCAG	1 cut(s)	63
RsaI	GTAC	2 cut(s)	373, 406
RsaNI	GTAC	2 cut(s)	372, 405
SacI	GAGCTC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	2 cut(s)	105, 295
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	327, 509
SduI	GDGCHC	1 cut(s)	428
SfcI	CTRYAG	2 cut(s)	59, 215
Sse9I	AATT	5 cut(s)	111, 123, 272, 338, 345
SseBI	AGGCCT	1 cut(s)	14
SspI	AATATT	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	428
StuI	AGGCCT	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	325, 507
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	263, 285
TasI	AATT	5 cut(s)	111, 123, 272, 338, 345
TfiI	GAWTC	3 cut(s)	191, 260, 504
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	104, 294
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	2 cut(s)	241, 281
XapI	RAATTY	3 cut(s)	123, 272, 338
XceI	RCATGY	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.