Rh4CG120300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0010553
Physical Location & Seq
Reverse (-)
23038805 .. 23044684
5880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG120300.1

Sequence Viewer

Length: 918 bp
ATGAAGGATGTTGGTACTTCTTCTCCTCCAAAGAGCTCAAAGAGATGGATTACGAGGAAGAAAACCAAAGGTGAAAACGTGGGTGATAGAGGAGATGTAGGTCCTCAGTTGAGATTCCTGCATCAGAGCTTCAAGCGGGAAACTTATCAACCAGATCAAGGAAAACTAAGGAAATGCTACCAACGGGATTCAGCAGCTAAAGCTAAAAGAAATGTCATTCCCTCTCGATCGAGTCCTGAGGATGCTCAGCTTGCTACTGTTTTCACTCGCCTGCATCATAAGTTCAATACTACCTTGAAGTCATTGGAATCGTTTCAAGCTAAGAACTCTGAGCGTGTGTTCAATACAGTTATGACTTACATTCCTCAAGATTTTCGAGGGAGGCTTATTAGAATGCAGAGGGAGCGATCCGAGAGGAAAGGGAGTAATCTGAGAGGAATAAGTAAGCTAGCGGAGATTGATGCTATGATTAGTTCTGGGGCAAGTATACGTGATCGTTATGCTCTCCTGTGGAAACAACAAATAGAGAGGAGGAGACTATTGGCACAGCTTGTTTCTGGTACTGGTGTCTACAAAACCCTTGTCAAGTACTTGGTTGGGGTTTTACTAGATTTTGTTCGCCAAATAAATGATGATGATGGGCCCATGGAAGAGCAACGACAGCGTTATGGACCACCTTTGTACAGCCTTACAACTTTGGTGCTTCTTATACGTCTGGCTATTTTGCTGTCTCGGGGGCGGTTTGAAACTAGAAAATTAAACAAGCAAGAGGTAGCTGTCTTGGAACAATCTATTGACGTCTACACCACTGAGTTTGAAAGTTTATTAGGTTTATCAGAGAAGGGGAATGGTGCTCCCTTGTATAAGACTTGCGTAGAATGTTTCTGGAACATTTGGGGTTGCTTTGGCTTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

35.02

Weight (kDa)

9.98

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 801
AccI GTMKAC 3 cut(s) 487, 570, 801
AciI CCGC 3 cut(s) 136, 452, 739
AclWI GGATC 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 798
AfaI GTAC 4 cut(s) 16, 562, 590, 683
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 7 cut(s) 133, 286, 298, 317, 343, 746, 818
AluBI AGCT 9 cut(s) 36, 129, 197, 203, 250, 320, 448, 550, 776
AluI AGCT 9 cut(s) 36, 129, 197, 203, 250, 320, 448, 550, 776
Alw21I GWGCWC 2 cut(s) 38, 856
Alw26I GTCTC 2 cut(s) 529, 735
AlwI GGATC 1 cut(s) 402
Ama87I CYCGRG 1 cut(s) 732
AoxI GGCC 1 cut(s) 641
ApaI GGGCCC 1 cut(s) 645
ApeKI GCWGC 1 cut(s) 194
ArsI GACNNNNNNTTYG 2 cut(s) 567, 599
Asp700I GAANNNNTTC 1 cut(s) 312
AspS9I GGNCC 4 cut(s) 101, 641, 642, 671
AsuHPI GGTGA 2 cut(s) 83, 95
AsuNHI GCTAGC 1 cut(s) 448
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 2 cut(s) 101, 671
AxyI CCTNAGG 1 cut(s) 237
BaeGI GKGCMC 1 cut(s) 645
BaeI ACNNNNGTAYC 2 cut(s) 552, 585
BanII GRGCYC 2 cut(s) 38, 645
Bbv12I GWGCWC 2 cut(s) 38, 856
BbvI GCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 39, 632
BcoDI GTCTC 2 cut(s) 529, 735
BfaI CTAG 3 cut(s) 449, 608, 750
BisI GCNGC 1 cut(s) 195
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 196
BmcAI AGTACT 1 cut(s) 590
Bme18I GGWCC 2 cut(s) 101, 671
BmeT110I CYCGRG 1 cut(s) 732
BmgT120I GGNCC 4 cut(s) 101, 641, 642, 671
BmiI GGNNCC 1 cut(s) 643
BmsI GCATC 4 cut(s) 130, 232, 283, 451
BmtI GCTAGC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 491
BsaHI GRCGYC 1 cut(s) 798
BsaJI CCNNGG 1 cut(s) 645
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 568
Bse21I CCTNAGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 645
BseGI GGATG 2 cut(s) 13, 247
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 6 cut(s) 119, 228, 260, 321, 422, 801
BseNI ACTGG 1 cut(s) 568
BseRI GAGGAG 4 cut(s) 15, 105, 544, 547
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 1 cut(s) 643
BsiEI CGRYCG 1 cut(s) 230
BsiHKAI GWGCWC 2 cut(s) 38, 856
BsiHKCI CYCGRG 1 cut(s) 732
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 529, 735
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 1 cut(s) 643
BsoBI CYCGRG 1 cut(s) 732
Bsp120I GGGCCC 1 cut(s) 641
Bsp1286I GDGCHC 3 cut(s) 38, 645, 856
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 4 cut(s) 154, 227, 407, 493
Bsp1720I GCTNAGC 1 cut(s) 246
Bsp19I CCATGG 1 cut(s) 645
BspACI CCGC 3 cut(s) 136, 452, 739
BspANI GGCC 1 cut(s) 643
BspCNI CTCAG 6 cut(s) 118, 229, 259, 322, 423, 802
BspLI GGNNCC 1 cut(s) 643
BspOI GCTAGC 1 cut(s) 452
BspPI GGATC 1 cut(s) 402
BspQI GCTCTTC 1 cut(s) 645
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 1 cut(s) 568
BssECI CCNNGG 1 cut(s) 645
BssMI GATC 4 cut(s) 154, 227, 407, 493
BssNAI GTATAC 1 cut(s) 488
BssNI GRCGYC 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 645
Bst1107I GTATAC 1 cut(s) 488
Bst4CI ACNGT 2 cut(s) 259, 349
Bst6I CTCTTC 1 cut(s) 645
BstACI GRCGYC 1 cut(s) 798
BstAUI TGTACA 1 cut(s) 681
BstBAI YACGTR 1 cut(s) 491
BstC8I GCNNGC 3 cut(s) 252, 272, 450
BstDEI CTNAG 8 cut(s) 105, 167, 237, 246, 321, 330, 431, 810
BstDSI CCRYGG 1 cut(s) 645
BstF5I GGATG 2 cut(s) 13, 247
BstKTI GATC 4 cut(s) 157, 230, 410, 496
BstMAI GTCTC 2 cut(s) 529, 735
BstMBI GATC 4 cut(s) 154, 227, 407, 493
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 4 cut(s) 200, 251, 403, 661
BstSLI GKGCMC 1 cut(s) 645
BstV1I GCAGC 1 cut(s) 206
BstZ17I GTATAC 1 cut(s) 488
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 1 cut(s) 643
BtgI CCRYGG 1 cut(s) 645
BtsCI GGATG 2 cut(s) 13, 247
BtsIMutI CAGTG 1 cut(s) 807
Cac8I GCNNGC 3 cut(s) 252, 272, 450
Cfr13I GGNCC 4 cut(s) 101, 641, 642, 671
Csp6I GTAC 4 cut(s) 15, 561, 589, 682
CspCI CAANNNNNGTGG 2 cut(s) 796, 831
CviAII CATG 1 cut(s) 646
CviQI GTAC 4 cut(s) 15, 561, 589, 682
DdeI CTNAG 8 cut(s) 105, 167, 237, 246, 321, 330, 431, 810
DpnI GATC 4 cut(s) 156, 229, 409, 495
DpnII GATC 4 cut(s) 154, 227, 407, 493
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 645
Eco24I GRGCYC 2 cut(s) 38, 645
Eco47I GGWCC 2 cut(s) 101, 671
Eco53kI GAGCTC 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 645
EcoT38I GRGCYC 2 cut(s) 38, 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 1 cut(s) 649
FatI CATG 1 cut(s) 645
FauI CCCGC 1 cut(s) 129
FblI GTMKAC 3 cut(s) 487, 570, 801
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 2 cut(s) 20, 254
FriOI GRGCYC 2 cut(s) 38, 645
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 3 cut(s) 449, 608, 750
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 643
Hin1I GRCGYC 1 cut(s) 798
Hin1II CATG 1 cut(s) 649
HinfI GANTC 4 cut(s) 114, 188, 232, 308
HphI GGTGA 2 cut(s) 83, 95
Hpy166II GTNNAC 3 cut(s) 488, 571, 802
Hpy188I TCNGA 5 cut(s) 126, 331, 412, 432, 838
Hpy188III TCNNGA 4 cut(s) 225, 236, 368, 886
Hpy8I GTNNAC 3 cut(s) 488, 571, 802
HpyAV CCTTC 1 cut(s) 835
HpyCH4III ACNGT 2 cut(s) 259, 349
HpyCH4IV ACGT 4 cut(s) 78, 490, 712, 798
HpyCH4V TGCA 4 cut(s) 121, 274, 397, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 251, 403, 661
HpyF3I CTNAG 8 cut(s) 105, 167, 237, 246, 321, 330, 431, 810
HpySE526I ACGT 4 cut(s) 78, 490, 712, 798
Hsp92I GRCGYC 1 cut(s) 798
Hsp92II CATG 1 cut(s) 649
Kzo9I GATC 4 cut(s) 154, 227, 407, 493
LguI GCTCTTC 1 cut(s) 645
LmnI GCTCC 2 cut(s) 403, 859
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 4 cut(s) 130, 232, 283, 451
MaeI CTAG 3 cut(s) 449, 608, 750
MaeII ACGT 4 cut(s) 78, 490, 712, 798
MalI GATC 4 cut(s) 156, 229, 409, 495
MboI GATC 4 cut(s) 154, 227, 407, 493
MboII GAAGA 3 cut(s) 12, 70, 662
MhlI GDGCHC 3 cut(s) 38, 645, 856
MluCI AATT 1 cut(s) 755
MlyI GAGTC 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 1 cut(s) 758
Mva1269I GAATGC 1 cut(s) 399
MwoI GCNNNNNNNGC 4 cut(s) 200, 251, 403, 661
NcoI CCATGG 1 cut(s) 645
NdeII GATC 4 cut(s) 154, 227, 407, 493
NheI GCTAGC 1 cut(s) 448
NlaIII CATG 1 cut(s) 649
NlaIV GGNNCC 1 cut(s) 643
PciSI GCTCTTC 1 cut(s) 645
PctI GAATGC 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 3 cut(s) 114, 188, 308
PkrI GCNGC 1 cut(s) 196
Ple19I CGATCG 1 cut(s) 230
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
Ppu21I YACGTR 1 cut(s) 491
PpuMI RGGWCCY 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 643
PspOMI GGGCCC 1 cut(s) 641
PspPI GGNCC 4 cut(s) 101, 641, 642, 671
PspPPI RGGWCCY 1 cut(s) 101
PvuI CGATCG 1 cut(s) 230
RsaI GTAC 4 cut(s) 16, 562, 590, 683
RsaNI GTAC 4 cut(s) 15, 561, 589, 682
SacI GAGCTC 1 cut(s) 38
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 1 cut(s) 758
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 4 cut(s) 154, 227, 407, 493
Sau96I GGNCC 4 cut(s) 101, 641, 642, 671
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 1 cut(s) 241
SduI GDGCHC 3 cut(s) 38, 645, 856
SfaNI GCATC 4 cut(s) 130, 232, 283, 451
SinI GGWCC 2 cut(s) 101, 671
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 1 cut(s) 755
SsiI CCGC 3 cut(s) 136, 452, 739
SspMI CTAG 3 cut(s) 449, 608, 750
SstI GAGCTC 1 cut(s) 38
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 2 cut(s) 259, 349
TaiI ACGT 4 cut(s) 81, 493, 715, 801
TaqI TCGA 3 cut(s) 226, 230, 376
TasI AATT 1 cut(s) 755
TatI WGTACW 2 cut(s) 588, 681
TfiI GAWTC 3 cut(s) 114, 188, 308
Tru1I TTAA 1 cut(s) 758
Tru9I TTAA 1 cut(s) 758
TscAI CASTG 1 cut(s) 814
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 814
VpaK11BI GGWCC 2 cut(s) 101, 671
XmiI GTMKAC 3 cut(s) 487, 570, 801
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 3 cut(s) 449, 608, 750
ZraI GACGTC 1 cut(s) 799
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.