Rh2DG446400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010553
Physical Location & Seq
Reverse (-)
64840596 .. 64850960
10365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG446400.1

Sequence Viewer

Length: 984 bp
ATGGGGAAGGAGTATGTCCTTGTGGTTGACTCAGATAATGTGGCTGCTAAAATTGACCCAAAAATTTTAGACCATCTGGTTGAAAAAGAGATAGACTACTGTATGGAGGTCACACCTACCTCCTCATATGATTCAGATTTGATTGGTTCACGCCTACAGAAGTTTGAGCTTGCAGAAATAGCTCAATATTCCGTCAAAGATTCGACGGAGAAATTCAAACTTGTCGATACTGGCAGCTTGTGGTTGAATGTTAGAACCATTGAAGATTTCTCTGTTTTGAAGGAAACAGAGTCTGATCAAGTTCTTTTGCAAGAAACAGCAGTTGGTCTCCTAGAAGCAATCACCTGTTCAATTGCTTCATGTGCCATCACTCTCCTAGAAGCAATCAGTAGTTTAGTCTATTTTTGTTACCCAGAATTTGTAATTGTTGATTTAGGGAAGAGGATTGGTACTCTGGAGTTGAGCATTATGAAGGATGTTGGTACTTCTTCTCCTCCAAAGAGCTCAAAGAGATGGATTACAAGGAAGAAAACCAGAGGTGAAAAGGTGGGTGATAGAGGAGATGTAGGTCATCAGTTGAGATTCCTGGCAGCAAAGCCAAATTGTTTGACTTGCAGGGAGCATCCAGCTCAGGAGCTCCTGTTTTGGAGTTGGGATGGGATTGTGAATACGTTTGTAGTTATGACTTACATTCCTCAAGATTTTCGGGGGAGGCTTATTAGACTGCAGAGGGAGCGATCCAAGAGGAATGGGAGTAATCTAAGAGGAATAAGCAAGCTAGCGGAGATTGATTCTATGATTAGTTATGGGGCAAGTATACGTGATCGTTATGCTCTCCTGTGGAAACAACAAATGGAGAGGAGGAGACTGTTGGCACAGCTTGTTTCTGCTACTAGTGTCTACAAAACCCTTGTCAAGTACTTGGTTGGGGTTCCGCAGGTTTTACTAGATTTTGTTCGCCAAATAAATGATGATGATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

37.04

Weight (kDa)

6.85

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGP PF01704 2 - 97 5.9e-15 UTP--glucose-1-phosphate uridylyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 928
AccI GTMKAC 2 cut(s) 817, 900
AciI CCGC 2 cut(s) 782, 935
AclWI GGATC 1 cut(s) 732
AcsI RAATTY 3 cut(s) 63, 212, 416
AfaI GTAC 3 cut(s) 451, 484, 920
AgsI TTSAA 6 cut(s) 83, 217, 247, 263, 280, 351
AhlI ACTAGT 1 cut(s) 893
AjnI CCWGG 1 cut(s) 585
AjuI GAANNNNNNNTTGG 2 cut(s) 306, 338
AluBI AGCT 8 cut(s) 169, 182, 237, 504, 629, 637, 778, 880
AluI AGCT 8 cut(s) 169, 182, 237, 504, 629, 637, 778, 880
Alw21I GWGCWC 2 cut(s) 506, 639
Alw26I GTCTC 2 cut(s) 332, 859
AlwI GGATC 1 cut(s) 732
AlwNI CAGNNNCTG 1 cut(s) 293
ApeKI GCWGC 3 cut(s) 44, 234, 590
ApoI RAATTY 3 cut(s) 63, 212, 416
ArsI GACNNNNNNTTYG 2 cut(s) 897, 929
AsuHPI GGTGA 3 cut(s) 334, 551, 563
AsuNHI GCTAGC 1 cut(s) 778
BanII GRGCYC 2 cut(s) 506, 639
Bbv12I GWGCWC 2 cut(s) 506, 639
BbvI GCAGC 3 cut(s) 31, 246, 602
BccI CCATC 5 cut(s) 81, 374, 507, 650, 971
BciT130I CCWGG 1 cut(s) 587
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 332, 859
BcuI ACTAGT 1 cut(s) 893
BfaI CTAG 5 cut(s) 332, 377, 779, 894, 947
BfmI CTRYAG 2 cut(s) 155, 725
BfuAI ACCTGC 1 cut(s) 928
BisI GCNGC 3 cut(s) 45, 235, 591
BlsI GCNGC 3 cut(s) 46, 236, 592
BmcAI AGTACT 1 cut(s) 920
Bme1390I CCNGG 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 933
BmrFI CCNGG 1 cut(s) 587
BmsI GCATC 1 cut(s) 631
BmtI GCTAGC 1 cut(s) 782
BpmI CTGGAG 1 cut(s) 476
Bpu10I CCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 681
BsaAI YACGTR 1 cut(s) 821
BsaI GGTCTC 1 cut(s) 332
BsaXI ACNNNNNCTCC 4 cut(s) 475, 505, 626, 656
Bse1I ACTGG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 587
BseGI GGATG 3 cut(s) 481, 622, 661
BseMII CTCAG 2 cut(s) 45, 644
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 5 cut(s) 112, 483, 573, 874, 877
BseXI GCAGC 3 cut(s) 31, 246, 602
BsiHKAI GWGCWC 2 cut(s) 506, 639
BsmAI GTCTC 2 cut(s) 332, 859
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 506, 639
Bsp143I GATC 3 cut(s) 295, 737, 823
BspACI CCGC 2 cut(s) 782, 935
BspCNI CTCAG 2 cut(s) 44, 643
BspLI GGNNCC 1 cut(s) 933
BspMAI CTGCAG 1 cut(s) 729
BspMI ACCTGC 1 cut(s) 928
BspOI GCTAGC 1 cut(s) 782
BspPI GGATC 1 cut(s) 732
BspTNI GGTCTC 1 cut(s) 332
BsrI ACTGG 1 cut(s) 235
BssMI GATC 3 cut(s) 295, 737, 823
BssNAI GTATAC 1 cut(s) 818
Bst1107I GTATAC 1 cut(s) 818
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 2 cut(s) 101, 870
Bst6I CTCTTC 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 821
BstC8I GCNNGC 3 cut(s) 171, 776, 780
BstDEI CTNAG 3 cut(s) 31, 630, 761
BstF5I GGATG 3 cut(s) 481, 622, 661
BstKTI GATC 3 cut(s) 298, 740, 826
BstMAI GTCTC 2 cut(s) 332, 859
BstMBI GATC 3 cut(s) 295, 737, 823
BstMWI GCNNNNNNNGC 3 cut(s) 179, 362, 733
BstNI CCWGG 1 cut(s) 587
BstSCI CCNGG 1 cut(s) 585
BstSFI CTRYAG 2 cut(s) 155, 725
BstV1I GCAGC 3 cut(s) 31, 246, 602
BstZ17I GTATAC 1 cut(s) 818
BtsCI GGATG 3 cut(s) 481, 622, 661
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 3 cut(s) 171, 776, 780
CaiI CAGNNNCTG 1 cut(s) 293
Csp6I GTAC 3 cut(s) 450, 483, 919
CviAII CATG 1 cut(s) 360
CviQI GTAC 3 cut(s) 450, 483, 919
DdeI CTNAG 3 cut(s) 31, 630, 761
DpnI GATC 3 cut(s) 297, 739, 825
DpnII GATC 3 cut(s) 295, 737, 823
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Ecl136II GAGCTC 2 cut(s) 504, 637
Eco24I GRGCYC 2 cut(s) 506, 639
Eco31I GGTCTC 1 cut(s) 332
Eco53kI GAGCTC 2 cut(s) 504, 637
EcoICRI GAGCTC 2 cut(s) 504, 637
EcoRII CCWGG 1 cut(s) 585
EcoT38I GRGCYC 2 cut(s) 506, 639
FaeI CATG 1 cut(s) 363
FatI CATG 1 cut(s) 359
FauNDI CATATG 1 cut(s) 127
FbaI TGATCA 1 cut(s) 295
FblI GTMKAC 2 cut(s) 817, 900
Fnu4HI GCNGC 3 cut(s) 45, 235, 591
FokI GGATG 3 cut(s) 488, 609, 668
FriOI GRGCYC 2 cut(s) 506, 639
Fsp4HI GCNGC 3 cut(s) 45, 235, 591
FspBI CTAG 5 cut(s) 332, 377, 779, 894, 947
GluI GCNGC 3 cut(s) 45, 235, 591
GsuI CTGGAG 1 cut(s) 476
Hin1II CATG 1 cut(s) 363
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 6 cut(s) 29, 131, 200, 290, 582, 791
HphI GGTGA 3 cut(s) 334, 551, 563
Hpy166II GTNNAC 4 cut(s) 28, 149, 818, 901
Hpy188I TCNGA 3 cut(s) 34, 136, 295
Hpy188III TCNNGA 3 cut(s) 455, 632, 698
Hpy8I GTNNAC 4 cut(s) 28, 149, 818, 901
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 274, 466
HpyCH4III ACNGT 2 cut(s) 101, 870
HpyCH4IV ACGT 2 cut(s) 671, 820
HpyCH4V TGCA 4 cut(s) 173, 310, 615, 727
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 362, 733
HpyF3I CTNAG 3 cut(s) 31, 630, 761
HpySE526I ACGT 2 cut(s) 671, 820
Hsp92II CATG 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 3 cut(s) 295, 737, 823
LmnI GCTCC 4 cut(s) 619, 634, 642, 733
Lsp1109I GCAGC 3 cut(s) 31, 246, 602
LweI GCATC 1 cut(s) 631
MaeI CTAG 5 cut(s) 332, 377, 779, 894, 947
MaeII ACGT 2 cut(s) 671, 820
MaeIII GTNAC 2 cut(s) 109, 407
MalI GATC 3 cut(s) 297, 739, 825
MboI GATC 3 cut(s) 295, 737, 823
MboII GAAGA 4 cut(s) 275, 451, 480, 538
MfeI CAATTG 1 cut(s) 351
MhlI GDGCHC 2 cut(s) 506, 639
MluCI AATT 7 cut(s) 51, 63, 212, 351, 416, 423, 601
MlyI GAGTC 2 cut(s) 23, 299
MspR9I CCNGG 1 cut(s) 587
MunI CAATTG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 587
MwoI GCNNNNNNNGC 3 cut(s) 179, 362, 733
NdeI CATATG 1 cut(s) 127
NdeII GATC 3 cut(s) 295, 737, 823
NheI GCTAGC 1 cut(s) 778
NlaIII CATG 1 cut(s) 363
NlaIV GGNNCC 1 cut(s) 933
NmuCI GTSAC 1 cut(s) 109
PfeI GAWTC 4 cut(s) 131, 200, 582, 791
PkrI GCNGC 3 cut(s) 46, 236, 592
PleI GAGTC 2 cut(s) 23, 298
PpsI GAGTC 2 cut(s) 23, 298
Ppu21I YACGTR 1 cut(s) 821
Psp124BI GAGCTC 2 cut(s) 506, 639
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 1 cut(s) 933
PstI CTGCAG 1 cut(s) 729
PstNI CAGNNNCTG 1 cut(s) 293
RsaI GTAC 3 cut(s) 451, 484, 920
RsaNI GTAC 3 cut(s) 450, 483, 919
SacI GAGCTC 2 cut(s) 506, 639
SatI GCNGC 3 cut(s) 45, 235, 591
Sau3AI GATC 3 cut(s) 295, 737, 823
ScaI AGTACT 1 cut(s) 920
SchI GAGTC 2 cut(s) 23, 299
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 2 cut(s) 506, 639
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 2 cut(s) 155, 725
SmlI CTYRAG 1 cut(s) 696
SmoI CTYRAG 1 cut(s) 696
SpeI ACTAGT 1 cut(s) 893
Sse9I AATT 7 cut(s) 51, 63, 212, 351, 416, 423, 601
SsiI CCGC 2 cut(s) 782, 935
SspI AATATT 1 cut(s) 188
SspMI CTAG 5 cut(s) 332, 377, 779, 894, 947
SstI GAGCTC 2 cut(s) 506, 639
StyD4I CCNGG 1 cut(s) 585
TaaI ACNGT 2 cut(s) 101, 870
TaiI ACGT 2 cut(s) 674, 823
TaqI TCGA 2 cut(s) 203, 225
TasI AATT 7 cut(s) 51, 63, 212, 351, 416, 423, 601
TatI WGTACW 1 cut(s) 918
TfiI GAWTC 4 cut(s) 131, 200, 582, 791
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 3 cut(s) 44, 234, 590
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 348, 485
TspGWI ACGGA 2 cut(s) 181, 221
XapI RAATTY 3 cut(s) 63, 212, 416
XmiI GTMKAC 2 cut(s) 817, 900
XspI CTAG 5 cut(s) 332, 377, 779, 894, 947
ZrmI AGTACT 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.