Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010553

Physical Location & Seq

Genomic Coordinates Reverse (-)

26128196 .. 26135036

Gene Structure 6841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG245300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCGGCAGCAAAGTTGCTTACTTGTATACTTAGTAGGGCAAGAAGGGAACCAATCAAGATGCCATGCTTGTTTGGAAGGTTAGTGATGACTTGGTGCTTACTTTGTTCTAGATTTGAACCTTTTGTTGCTTTGTGTATGATCAGCAAAACCAAATTGTTTGACTTGCAGGGAGCATCCAGCTCAGGAGCTCCTCATCAGAGCTTTAAGGGGGAAACTTATCAACCAGATCAAGGAAAACTAAGGAAATGCTACCAACGGGATTCAGCAGCTAAAGCTAAAAGAAATGTCATTCCCTCTCGATCGAGTCCTGAGGATGCTCAGCTTGCTACTTTTTTCACTCACCTGCATCATAAGTTCCATACGACCTTGAAGTCATTGGAATCGTTTCAAGCTAAGAACTCTGAGCGTGTGTTCAATACAGGAATGAATATGAGCGTAGAAGGAATGAGGACAACAAATGAAAAGGAATATGGAAGAGAAATTTCAAACCAATCAAAGCGACATCTTGATCAGCCTCATCTTAAAAACATCAACATGGCATCAGAGATAGCCCTGGCCAATGTGCCACAAATCTTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.96

Weight (kDa)

9.69

Isoelectric Point (pI)

59.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00430
pyrus_communis	pycom420g00820
rosa_chinensis	RchiOBHm_Chr2g0163341
rosa_laevigata	RLG00000011790 RLG00000020219
rosa_multiflora	Rmu_sc0004112.1_g000025
rosa_samantha	Rh1DG076300 Rh2BG436700 Rh2BG436800 Rh2CG550700 Rh2DG446400 Rh3AG245300 Rh4CG120300 Rh5BG439600 Rh5CG230100 Rh5CG462400 Rh6AG254800 Rh6BG131500 Rh6DG117100
rosa_wichuraiana	Rw5G003000 Rw5G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	354
AasI	GACNNNNNNGTC	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	1 cut(s)	483
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	5 cut(s)	119, 373, 392, 418, 489
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	7 cut(s)	183, 191, 204, 272, 278, 325, 395
AluI	AGCT	7 cut(s)	183, 191, 204, 272, 278, 325, 395
Alw21I	GWGCWC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	2 cut(s)	8, 269
ApoI	RAATTY	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	335
AxyI	CCTNAGG	1 cut(s)	312
BalI	TGGCCA	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	20, 281
BciT130I	CCWGG	1 cut(s)	557
BclI	TGATCA	2 cut(s)	141, 511
BfaI	CTAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	354
BisI	GCNGC	3 cut(s)	6, 9, 270
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	3 cut(s)	7, 10, 271
Bme1390I	CCNGG	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	5 cut(s)	51, 185, 307, 358, 551
Bpu10I	CCTNAGC	1 cut(s)	184
Bpu1102I	GCTNAGC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	555
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse21I	CCTNAGG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	2 cut(s)	176, 322
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	4 cut(s)	198, 303, 335, 396
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	20, 281
Bsh1285I	CGRYCG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	560
BsiEI	CGRYCG	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	233
BsnI	GGCC	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	4 cut(s)	141, 229, 302, 511
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	4 cut(s)	197, 304, 334, 397
BspLI	GGNNCC	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	4 cut(s)	141, 229, 302, 511
BssNAI	GTATAC	1 cut(s)	29
Bst1107I	GTATAC	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	557
Bst6I	CTCTTC	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	7 cut(s)	32, 184, 242, 312, 321, 396, 405
BstF5I	GGATG	2 cut(s)	176, 322
BstKTI	GATC	4 cut(s)	144, 232, 305, 514
BstMBI	GATC	4 cut(s)	141, 229, 302, 511
BstMCI	CGRYCG	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 326
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	555
BstV1I	GCAGC	2 cut(s)	20, 281
BstZ17I	GTATAC	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	176, 322
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	327
CspCI	CAANNNNNGTGG	1 cut(s)	558
CviAII	CATG	2 cut(s)	66, 538
DdeI	CTNAG	7 cut(s)	32, 184, 242, 312, 321, 396, 405
DpnI	GATC	4 cut(s)	143, 231, 304, 513
DpnII	GATC	4 cut(s)	141, 229, 302, 511
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	2 cut(s)	69, 541
FaiI	YATR	8 cut(s)	29, 67, 140, 354, 363, 434, 474, 539
FatI	CATG	2 cut(s)	65, 537
FbaI	TGATCA	2 cut(s)	141, 511
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	6, 9, 270
FokI	GGATG	2 cut(s)	163, 329
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	3 cut(s)	6, 9, 270
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	3 cut(s)	6, 9, 270
HaeIII	GGCC	1 cut(s)	560
Hin1II	CATG	2 cut(s)	69, 541
HinfI	GANTC	3 cut(s)	263, 307, 383
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	3 cut(s)	201, 406, 547
Hpy188III	TCNNGA	6 cut(s)	58, 111, 186, 300, 311, 509
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	39, 72, 437
HpyCH4V	TGCA	2 cut(s)	169, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 326
HpyF3I	CTNAG	7 cut(s)	32, 184, 242, 312, 321, 396, 405
Hsp92II	CATG	2 cut(s)	69, 541
Ksp22I	TGATCA	2 cut(s)	141, 511
Kzo9I	GATC	4 cut(s)	141, 229, 302, 511
LmnI	GCTCC	3 cut(s)	173, 188, 196
LpnPI	CCDG	9 cut(s)	155, 171, 193, 240, 324, 359, 408, 542, 569
Lsp1109I	GCAGC	2 cut(s)	20, 281
LweI	GCATC	5 cut(s)	51, 185, 307, 358, 551
MaeI	CTAG	1 cut(s)	111
MalI	GATC	4 cut(s)	143, 231, 304, 513
MboI	GATC	4 cut(s)	141, 229, 302, 511
MboII	GAAGA	1 cut(s)	489
MhlI	GDGCHC	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	2 cut(s)	155, 483
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	5 cut(s)	204, 307, 307, 444, 528
Mox20I	TGGCCA	1 cut(s)	560
MroXI	GAANNNNTTC	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	2 cut(s)	207, 525
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	560
MspR9I	CCNGG	1 cut(s)	557
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	275, 326
NdeII	GATC	4 cut(s)	141, 229, 302, 511
NlaIII	CATG	2 cut(s)	69, 541
NlaIV	GGNNCC	1 cut(s)	51
PaqCI	CACCTGC	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	263, 383
PkrI	GCNGC	3 cut(s)	7, 10, 271
Ple19I	CGATCG	1 cut(s)	305
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	1 cut(s)	51
PvuI	CGATCG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	2 cut(s)	207, 525
SatI	GCNGC	3 cut(s)	6, 9, 270
Sau3AI	GATC	4 cut(s)	141, 229, 302, 511
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	1 cut(s)	193
SfaNI	GCATC	5 cut(s)	51, 185, 307, 358, 551
SmiMI	CAYNNNNRTG	1 cut(s)	536
Sse9I	AATT	2 cut(s)	155, 483
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	555
TaqI	TCGA	2 cut(s)	301, 305
TasI	AATT	2 cut(s)	155, 483
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	263, 383
Tru1I	TTAA	2 cut(s)	207, 525
Tru9I	TTAA	2 cut(s)	207, 525
TseI	GCWGC	2 cut(s)	8, 269
TspDTI	ATGAA	2 cut(s)	443, 477
XapI	RAATTY	1 cut(s)	483
XbaI	TCTAGA	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.