Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009676

Physical Location & Seq

Genomic Coordinates Reverse (-)

2440651 .. 2441925

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTCGAAAAGGCGCAAGGTAACGATTGATGATGGGAAAAGAACAAGCAGCATAGATGATCAGAAGATCAAGGTTGCTTCTGCTTCTTCTTTGTGTGATTTTTGTGCCAACTTTGCTGACAGATTTGGTTTTCTACACGAGGAGCACTATGCCACCCTAAGTGCTGAACACATTTACCGTTTACGCAAGCTTGTCACTGAGAAATTGCTACTCCGCAGAAAACTCCTTCTCGTGATTAGTCTAGATCACGCATTTTTAAGTTACACAAGTCTCAATAGTCTGACTCCAGATGAAGCAGAATGTTTAAAGACCCAAGCTGATTCAGAAGGTGTTTTCACAGTGCTAGTTCCTCCGGAAATGAAACCTGTGATTATCAAGTTCAGGCCCAAACTGAGAGCCTTTCTGAAGGAAGCCAGTGAGTTTTTCGAAATTTACGCATATGCAAATGCTCCTCAATCTCTTGTGTGGAAAATTGTTGAGCTACTCGATCCTAGAAATGAGTACTTTGGTCGTAGAGTGATATCGCGCGAGGATTTTCATAGCACCCACAAAGGAAAAAAGTCTCTTGATCTTGTGCTTGGCCAAAAGTCTGCTGTTTTGGTGATTGATGATGGCTTAGCTGGATGGACAAAGAACAGTGAGAATAATGTAATCGTATTGCCCAGGTATTGTTTCTTCAAAAAGAGTGGCAAGAAGAAGAGAAAACGCAAGTCTCTGTGTGAGTTGAAATCTGATGCACGGGCTGGTATTCTTGCATCTTATCTTAAATATCTTAAGCGAATACACAACAGGTTCTTTAATGATGAAGTAATGTCACTAATGTGTGACAACTTTTTTGACCGGAATGTGAGGATGCTGATGAAAATTGAGTGGGATGCTGTAGGGGACGATAGGCTGCATTTGTGGAGGAAGGCTATAGCAAATGGTATGCGGAAAAGAGTTGAGGCGTCGCTCAGTTTTCAACAGAAGAAATTGGTAAAACAGTCGTCCGAAGTTATTTGTGTTGAAGAACAAGTGGATGATCCATCATCATTAGAGGTTGCAGAAGCAGCTGATGTTGGAAAGTTCCCAGTTATGACCAAGGATAGCGAATTCACCTGCAGCTTATGTGGTTGCAGCTCATATACGAACACCCCGGAAGCCCTTTTTCTATCCCTTTATCACAAGAGAGTCATGAAGACAAGTACTTCTCTGTTACCGACTGAGGATGAAGAAAGTAGGCAAAAGATGGAAAGAAACACCGAGACAAATAGGTATTCTGATCTAGTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

425

Amino Acids

48.77

Weight (kDa)

9.08

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	76 - 233	5e-16	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02680 FvH4_4g35032 FvH4_6g12031
rosa_chinensis	RchiOBHm_Chr3g0463881
rosa_laevigata	RLG00000024739 RLG00000024742 RLG00000024745 RLG00000024748
rosa_multiflora	Rmu_co8025626.1_g000001 Rmu_co8196170.1_g000001 Rmu_sc0000517.1_g000007 Rmu_sc0004796.1_g000001 Rmu_sc0042095.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416210
rosa_rugosa	Rorug03G0068800 Rorug03G0068900
rosa_samantha	Rh3AG125800 Rh3BG129900 Rh3CG132400 Rh3DG131000 Rh3DG131100
rosa_wichuraiana	Rw3G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1106
Acc36I	ACCTGC	1 cut(s)	1106
AccII	CGCG	2 cut(s)	526, 528
AccIII	TCCGGA	1 cut(s)	352
AciI	CCGC	2 cut(s)	214, 931
AclWI	GGATC	2 cut(s)	482, 1016
AcoI	YGGCCR	1 cut(s)	580
AcsI	RAATTY	2 cut(s)	429, 1091
AcuI	CTGAAG	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	947
AfaI	GTAC	2 cut(s)	503, 1186
AflII	CTTAAG	1 cut(s)	773
AgsI	TTSAA	4 cut(s)	679, 727, 962, 1007
AjnI	CCWGG	1 cut(s)	662
AleI	CACNNNNGTG	1 cut(s)	820
AluBI	AGCT	7 cut(s)	190, 317, 481, 620, 1052, 1104, 1119
AluI	AGCT	7 cut(s)	190, 317, 481, 620, 1052, 1104, 1119
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	4 cut(s)	275, 567, 717, 1238
AlwI	GGATC	2 cut(s)	482, 1016
Aor13HI	TCCGGA	1 cut(s)	352
AoxI	GGCC	2 cut(s)	383, 580
ApeKI	GCWGC	5 cut(s)	48, 895, 1049, 1101, 1116
ApoI	RAATTY	2 cut(s)	429, 1091
ArsI	GACNNNNNNTTYG	2 cut(s)	818, 850
AspLEI	GCGC	2 cut(s)	15, 528
AspS9I	GGNCC	1 cut(s)	384
AsuC2I	CCSGG	1 cut(s)	1136
AsuHPI	GGTGA	2 cut(s)	613, 1087
AsuII	TTCGAA	1 cut(s)	426
BalI	TGGCCA	1 cut(s)	582
BarI	GAAGNNNNNNTAC	2 cut(s)	659, 691
BauI	CACGAG	2 cut(s)	137, 230
BbsI	GAAGAC	1 cut(s)	1184
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	5 cut(s)	60, 882, 1061, 1113, 1128
BccI	CCATC	5 cut(s)	26, 605, 618, 1033, 1222
BciT130I	CCWGG	1 cut(s)	664
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	1136
BcoDI	GTCTC	4 cut(s)	275, 567, 717, 1238
BfaI	CTAG	4 cut(s)	242, 344, 492, 1265
BfmI	CTRYAG	3 cut(s)	879, 915, 1099
BfrI	CTTAAG	1 cut(s)	773
BfuAI	ACCTGC	1 cut(s)	1106
BisI	GCNGC	5 cut(s)	49, 896, 1050, 1102, 1117
BlpI	GCTNAGC	1 cut(s)	616
BlsI	GCNGC	5 cut(s)	50, 897, 1051, 1103, 1118
BmcAI	AGTACT	2 cut(s)	503, 1186
Bme1390I	CCNGG	2 cut(s)	664, 1136
BmgT120I	GGNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	664, 1136
BmrI	ACTGGG	1 cut(s)	1064
BmsI	GCATC	4 cut(s)	724, 764, 843, 865
BmuI	ACTGGG	1 cut(s)	1064
BpiI	GAAGAC	1 cut(s)	1184
BpmI	CTGGAG	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	616
Bpu14I	TTCGAA	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	1136
BsaHI	GRCGYC	1 cut(s)	947
BsaJI	CCNNGG	3 cut(s)	662, 1080, 1134
BsaWI	WCCGGW	2 cut(s)	352, 840
Bse1I	ACTGG	2 cut(s)	414, 1070
BseAI	TCCGGA	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	664
BseDI	CCNNGG	3 cut(s)	662, 1080, 1134
BseGI	GGATG	5 cut(s)	629, 858, 880, 1024, 1213
BseMII	CTCAG	4 cut(s)	189, 383, 967, 1194
BseNI	ACTGG	2 cut(s)	414, 1070
BseRI	GAGGAG	2 cut(s)	155, 441
BseXI	GCAGC	5 cut(s)	60, 882, 1061, 1113, 1128
Bsh1236I	CGCG	2 cut(s)	526, 528
BshFI	GGCC	2 cut(s)	385, 582
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	353, 841, 1136
BslFI	GGGAC	1 cut(s)	899
BsmAI	GTCTC	4 cut(s)	275, 567, 717, 1238
BsmFI	GGGAC	1 cut(s)	899
BsnI	GGCC	2 cut(s)	385, 582
Bsp119I	TTCGAA	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp13I	TCCGGA	1 cut(s)	352
Bsp143I	GATC	7 cut(s)	58, 66, 244, 487, 568, 1021, 1261
Bsp1720I	GCTNAGC	1 cut(s)	616
BspACI	CCGC	2 cut(s)	214, 931
BspANI	GGCC	2 cut(s)	385, 582
BspCNI	CTCAG	4 cut(s)	190, 384, 966, 1195
BspEI	TCCGGA	1 cut(s)	352
BspFNI	CGCG	2 cut(s)	526, 528
BspHI	TCATGA	1 cut(s)	1173
BspMAI	CTGCAG	1 cut(s)	1103
BspMI	ACCTGC	1 cut(s)	1106
BspPI	GGATC	2 cut(s)	482, 1016
BspT104I	TTCGAA	1 cut(s)	426
BspTI	CTTAAG	1 cut(s)	773
BsrI	ACTGG	2 cut(s)	414, 1070
BssECI	CCNNGG	3 cut(s)	662, 1080, 1134
BssMI	GATC	7 cut(s)	58, 66, 244, 487, 568, 1021, 1261
BssNI	GRCGYC	1 cut(s)	947
BssSI	CACGAG	2 cut(s)	137, 230
BssT1I	CCWWGG	1 cut(s)	1080
Bst2BI	CACGAG	2 cut(s)	137, 230
Bst2UI	CCWGG	1 cut(s)	664
Bst4CI	ACNGT	4 cut(s)	179, 340, 638, 984
Bst6I	CTCTTC	1 cut(s)	692
BstACI	GRCGYC	1 cut(s)	947
BstAFI	CTTAAG	1 cut(s)	773
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	6 cut(s)	158, 198, 392, 616, 953, 1203
BstF5I	GGATG	5 cut(s)	629, 858, 880, 1024, 1213
BstFNI	CGCG	2 cut(s)	526, 528
BstHHI	GCGC	2 cut(s)	15, 528
BstKTI	GATC	7 cut(s)	61, 69, 247, 490, 571, 1024, 1264
BstMAI	GTCTC	4 cut(s)	275, 567, 717, 1238
BstMBI	GATC	7 cut(s)	58, 66, 244, 487, 568, 1021, 1261
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 1049
BstNI	CCWGG	1 cut(s)	664
BstSCI	CCNGG	2 cut(s)	662, 1134
BstSFI	CTRYAG	3 cut(s)	879, 915, 1099
BstUI	CGCG	2 cut(s)	526, 528
BstV1I	GCAGC	5 cut(s)	60, 882, 1061, 1113, 1128
BstV2I	GAAGAC	1 cut(s)	1184
BsuRI	GGCC	2 cut(s)	385, 582
BtsCI	GGATG	5 cut(s)	629, 858, 880, 1024, 1213
BtsIMutI	CAGTG	4 cut(s)	195, 345, 421, 643
BveI	ACCTGC	1 cut(s)	1106
Cac8I	GCNNGC	1 cut(s)	188
CciI	TCATGA	1 cut(s)	1173
CfoI	GCGC	2 cut(s)	15, 528
Cfr13I	GGNCC	1 cut(s)	384
CseI	GACGC	1 cut(s)	936
Csp6I	GTAC	2 cut(s)	502, 1185
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	1 cut(s)	1174
CviQI	GTAC	2 cut(s)	502, 1185
DdeI	CTNAG	6 cut(s)	158, 198, 392, 616, 953, 1203
DpnI	GATC	7 cut(s)	60, 68, 246, 489, 570, 1023, 1263
DpnII	GATC	7 cut(s)	58, 66, 244, 487, 568, 1021, 1261
DraI	TTTAAA	1 cut(s)	306
EaeI	YGGCCR	1 cut(s)	580
Eam1104I	CTCTTC	1 cut(s)	692
EarI	CTCTTC	1 cut(s)	692
Eco130I	CCWWGG	1 cut(s)	1080
Eco32I	GATATC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	1091
EcoRII	CCWGG	1 cut(s)	662
EcoRV	GATATC	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	1080
ErhI	CCWWGG	1 cut(s)	1080
FaeI	CATG	1 cut(s)	1177
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	1 cut(s)	1173
FauNDI	CATATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	5 cut(s)	49, 896, 1050, 1102, 1117
FokI	GGATG	5 cut(s)	636, 865, 887, 1031, 1220
Fsp4HI	GCNGC	5 cut(s)	49, 896, 1050, 1102, 1117
FspBI	CTAG	4 cut(s)	242, 344, 492, 1265
GlaI	GCGC	2 cut(s)	14, 527
GluI	GCNGC	5 cut(s)	49, 896, 1050, 1102, 1117
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	385, 582
HapII	CCGG	3 cut(s)	353, 841, 1136
HgaI	GACGC	1 cut(s)	936
HhaI	GCGC	2 cut(s)	15, 528
Hin1I	GRCGYC	1 cut(s)	947
Hin1II	CATG	1 cut(s)	1177
Hin6I	GCGC	2 cut(s)	13, 526
HinP1I	GCGC	2 cut(s)	13, 526
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	283, 320, 1170
HpaII	CCGG	3 cut(s)	353, 841, 1136
HphI	GGTGA	2 cut(s)	613, 1087
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	7 cut(s)	63, 282, 325, 405, 733, 991, 1261
Hpy188III	TCNNGA	6 cut(s)	232, 242, 287, 353, 566, 1174
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	952
HpyAV	CCTTC	4 cut(s)	236, 320, 400, 904
HpyCH4III	ACNGT	4 cut(s)	179, 340, 638, 984
HpyCH4V	TGCA	7 cut(s)	443, 737, 755, 898, 1043, 1101, 1116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 1049
HpyF3I	CTNAG	6 cut(s)	158, 198, 392, 616, 953, 1203
Hsp92I	GRCGYC	1 cut(s)	947
Hsp92II	CATG	1 cut(s)	1177
HspAI	GCGC	2 cut(s)	13, 526
Kpn2I	TCCGGA	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	7 cut(s)	58, 66, 244, 487, 568, 1021, 1261
LmnI	GCTCC	2 cut(s)	142, 454
Lsp1109I	GCAGC	5 cut(s)	60, 882, 1061, 1113, 1128
LweI	GCATC	4 cut(s)	724, 764, 843, 865
MaeI	CTAG	4 cut(s)	242, 344, 492, 1265
MaeIII	GTNAC	6 cut(s)	19, 193, 260, 813, 824, 1194
MalI	GATC	7 cut(s)	60, 68, 246, 489, 570, 1023, 1263
MboI	GATC	7 cut(s)	58, 66, 244, 487, 568, 1021, 1261
MboII	GAAGA	9 cut(s)	76, 78, 667, 706, 709, 979, 1019, 1189, 1223
MhlI	GDGCHC	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	6 cut(s)	203, 429, 471, 864, 971, 1091
MluNI	TGGCCA	1 cut(s)	582
MlyI	GAGTC	2 cut(s)	277, 1179
MmeI	TCCRAC	1 cut(s)	1039
MnlI	CCTC	9 cut(s)	133, 360, 462, 523, 843, 900, 937, 1030, 1198
Mox20I	TGGCCA	1 cut(s)	582
MroI	TCCGGA	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	582
MseI	TTAA	5 cut(s)	257, 305, 765, 774, 798
MslI	CAYNNNNRTG	1 cut(s)	820
Msp20I	TGGCCA	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	1052
MspCI	CTTAAG	1 cut(s)	773
MspI	CCGG	3 cut(s)	353, 841, 1136
MspR9I	CCNGG	2 cut(s)	664, 1136
MvaI	CCWGG	1 cut(s)	664
MvnI	CGCG	2 cut(s)	526, 528
MwoI	GCNNNNNNNGC	2 cut(s)	113, 1049
NciI	CCSGG	1 cut(s)	1136
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	7 cut(s)	58, 66, 244, 487, 568, 1021, 1261
NlaIII	CATG	1 cut(s)	1177
NmuCI	GTSAC	3 cut(s)	193, 813, 824
NspV	TTCGAA	1 cut(s)	426
OliI	CACNNNNGTG	1 cut(s)	820
PagI	TCATGA	1 cut(s)	1173
PaqCI	CACCTGC	1 cut(s)	1106
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	5 cut(s)	50, 897, 1051, 1103, 1118
PleI	GAGTC	2 cut(s)	277, 1178
PpsI	GAGTC	2 cut(s)	277, 1178
Psp6I	CCWGG	1 cut(s)	662
PspGI	CCWGG	1 cut(s)	662
PspPI	GGNCC	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	1103
PvuII	CAGCTG	1 cut(s)	1052
RsaI	GTAC	2 cut(s)	503, 1186
RsaNI	GTAC	2 cut(s)	502, 1185
RseI	CAYNNNNRTG	1 cut(s)	820
SaqAI	TTAA	5 cut(s)	257, 305, 765, 774, 798
SatI	GCNGC	5 cut(s)	49, 896, 1050, 1102, 1117
Sau3AI	GATC	7 cut(s)	58, 66, 244, 487, 568, 1021, 1261
Sau96I	GGNCC	1 cut(s)	384
ScaI	AGTACT	2 cut(s)	503, 1186
SchI	GAGTC	2 cut(s)	277, 1179
ScrFI	CCNGG	2 cut(s)	664, 1136
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	4 cut(s)	724, 764, 843, 865
SfcI	CTRYAG	3 cut(s)	879, 915, 1099
SfuI	TTCGAA	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	820
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	6 cut(s)	203, 429, 471, 864, 971, 1091
SsiI	CCGC	2 cut(s)	214, 931
SspMI	CTAG	4 cut(s)	242, 344, 492, 1265
StyD4I	CCNGG	2 cut(s)	662, 1134
StyI	CCWWGG	1 cut(s)	1080
TaaI	ACNGT	4 cut(s)	179, 340, 638, 984
TaqI	TCGA	3 cut(s)	5, 426, 486
TasI	AATT	6 cut(s)	203, 429, 471, 864, 971, 1091
TatI	WGTACW	2 cut(s)	501, 1184
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	5 cut(s)	257, 305, 765, 774, 798
Tru9I	TTAA	5 cut(s)	257, 305, 765, 774, 798
TscAI	CASTG	4 cut(s)	202, 345, 421, 643
TseFI	GTSAC	3 cut(s)	193, 813, 824
TseI	GCWGC	5 cut(s)	48, 895, 1049, 1101, 1116
Tsp45I	GTSAC	3 cut(s)	193, 813, 824
TspDTI	ATGAA	7 cut(s)	306, 374, 527, 819, 875, 1190, 1224
TspRI	CASTG	4 cut(s)	202, 345, 421, 643
Vha464I	CTTAAG	1 cut(s)	773
XapI	RAATTY	2 cut(s)	429, 1091
XbaI	TCTAGA	1 cut(s)	241
XspI	CTAG	4 cut(s)	242, 344, 492, 1265
ZrmI	AGTACT	2 cut(s)	503, 1186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.