Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8196170.1

Orthogroup ID

OG0009676

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 648

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8196170.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 647 bp

atgctagtccacaaaaaactccacctggtaattaatctggatcacacctttctgagtcacacaaggctcagtgatctgaccccagaagaagcagaaaatataaaggtccaagaagattcccaagatattttcacagtgcgagttcctccaaaaatgaaacctattattatcaagttcaggccctttctgagaacctttctgaaggaagccagtgactttttcgaaatttatgcatatgcaaatgctcctcgatctcttgtgtggaaaattgttgaactgctcgatcctagaaatgagtacttcggtcgtagagtgatatcgcgtgagagcttttatagcacccaccgaggaaagaagtctcttgatcttgtgcttggccaaaagtctgctgttttggtggttgatgatgaagaagatggatggcaggagaaaaatcaaaataatgtaatgctactgggagagtattgtttcttcaaaaagacgagtggcaagaagagaaaacggaagtccctttgtgagttgaaatctgatgaacgggctgcttctcttgcatctcttcttaaacagcttaagcaaatacacaacaggttctttaatgatgaaataatgtgtgacaaccttttcgacagagatgtgagggtgctgtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

215

Amino Acids

25.29

Weight (kDa)

9.15

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02680 FvH4_4g35032 FvH4_6g12031
rosa_chinensis	RchiOBHm_Chr3g0463881
rosa_laevigata	RLG00000024739 RLG00000024742 RLG00000024745 RLG00000024748
rosa_multiflora	Rmu_co8025626.1_g000001 Rmu_co8196170.1_g000001 Rmu_sc0000517.1_g000007 Rmu_sc0004796.1_g000001 Rmu_sc0042095.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416210
rosa_rugosa	Rorug03G0068800 Rorug03G0068900
rosa_samantha	Rh3AG125800 Rh3BG129900 Rh3CG132400 Rh3DG131000 Rh3DG131100
rosa_wichuraiana	Rw3G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	322
AclWI	GGATC	2 cut(s)	48, 278
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	299
AflII	CTTAAG	1 cut(s)	569
AgsI	TTSAA	3 cut(s)	275, 475, 523
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	2 cut(s)	330, 568
AluI	AGCT	2 cut(s)	330, 568
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	48, 278
AoxI	GGCC	2 cut(s)	179, 376
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	1 cut(s)	225
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
AseI	ATTAAT	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	106, 180
AsuII	TTCGAA	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	378
BarI	GAAGNNNNNNTAC	2 cut(s)	455, 487
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	2 cut(s)	410, 414
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	2 cut(s)	5, 288
BfrI	CTTAAG	1 cut(s)	569
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	106, 180
BmrFI	CCNGG	1 cut(s)	26
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	560
BmuI	ACTGGG	1 cut(s)	464
Bpu14I	TTCGAA	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	346
Bse1I	ACTGG	2 cut(s)	210, 459
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	425
BseMII	CTCAG	3 cut(s)	44, 82, 179
BseNI	ACTGG	2 cut(s)	210, 459
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	2 cut(s)	181, 378
BsiEI	CGRYCG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	181, 378
Bsp119I	TTCGAA	1 cut(s)	222
Bsp143I	GATC	5 cut(s)	40, 73, 251, 283, 364
BspANI	GGCC	2 cut(s)	181, 378
BspCNI	CTCAG	3 cut(s)	45, 81, 180
BspFNI	CGCG	1 cut(s)	322
BspPI	GGATC	2 cut(s)	48, 278
BspT104I	TTCGAA	1 cut(s)	222
BspTI	CTTAAG	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	210, 459
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	5 cut(s)	40, 73, 251, 283, 364
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	2 cut(s)	488, 561
BstAFI	CTTAAG	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	53, 68, 188
BstF5I	GGATG	1 cut(s)	425
BstFNI	CGCG	1 cut(s)	322
BstKTI	GATC	5 cut(s)	43, 76, 254, 286, 367
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	5 cut(s)	40, 73, 251, 283, 364
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 548
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	526
BsuRI	GGCC	2 cut(s)	181, 378
BtsCI	GGATG	1 cut(s)	425
BtsIMutI	CAGTG	3 cut(s)	76, 141, 217
Cfr13I	GGNCC	2 cut(s)	106, 180
CsiI	ACCWGGT	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	298
CviJI	RGCY	7 cut(s)	67, 181, 209, 330, 378, 539, 568
CviKI_1	RGCY	7 cut(s)	67, 181, 209, 330, 378, 539, 568
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	53, 68, 188
DpnI	GATC	5 cut(s)	42, 75, 253, 285, 366
DpnII	GATC	5 cut(s)	40, 73, 251, 283, 364
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	488, 561
EarI	CTCTTC	2 cut(s)	488, 561
Eco32I	GATATC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	235
FaiI	YATR	5 cut(s)	101, 231, 235, 237, 336
FaqI	GGGAC	1 cut(s)	493
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	1 cut(s)	432
Fsp4HI	GCNGC	1 cut(s)	540
FspBI	CTAG	2 cut(s)	5, 288
GluI	GCNGC	1 cut(s)	540
HaeIII	GGCC	2 cut(s)	181, 378
HinfI	GANTC	2 cut(s)	55, 116
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	5 cut(s)	54, 78, 189, 201, 529
Hpy188III	TCNNGA	2 cut(s)	38, 362
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	233, 239, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 548
HpyF3I	CTNAG	3 cut(s)	53, 68, 188
Kzo9I	GATC	5 cut(s)	40, 73, 251, 283, 364
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	9 cut(s)	11, 23, 38, 96, 163, 223, 410, 440, 571
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	1 cut(s)	560
MabI	ACCWGGT	1 cut(s)	24
MaeI	CTAG	2 cut(s)	5, 288
MaeIII	GTNAC	3 cut(s)	56, 212, 611
MalI	GATC	5 cut(s)	42, 75, 253, 285, 366
MboI	GATC	5 cut(s)	40, 73, 251, 283, 364
MboII	GAAGA	7 cut(s)	98, 125, 422, 425, 463, 505, 548
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	3 cut(s)	30, 225, 267
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	156, 258, 341, 630
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	4 cut(s)	33, 561, 570, 594
Msp20I	TGGCCA	1 cut(s)	378
MspCI	CTTAAG	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	2 cut(s)	336, 548
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	5 cut(s)	40, 73, 251, 283, 364
NmuCI	GTSAC	3 cut(s)	56, 212, 611
NsiI	ATGCAT	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	541
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
PshBI	ATTAAT	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	106, 180
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	4 cut(s)	33, 561, 570, 594
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	5 cut(s)	40, 73, 251, 283, 364
Sau96I	GGNCC	2 cut(s)	106, 180
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	26
SetI	ASST	9 cut(s)	27, 50, 108, 163, 197, 332, 570, 590, 621
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	560
SfuI	TTCGAA	1 cut(s)	222
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	3 cut(s)	30, 225, 267
SspMI	CTAG	2 cut(s)	5, 288
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	4 cut(s)	222, 250, 282, 624
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	3 cut(s)	30, 225, 267
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	4 cut(s)	33, 561, 570, 594
Tru9I	TTAA	4 cut(s)	33, 561, 570, 594
TscAI	CASTG	3 cut(s)	76, 141, 217
TseFI	GTSAC	3 cut(s)	56, 212, 611
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	3 cut(s)	56, 212, 611
TspDTI	ATGAA	4 cut(s)	170, 423, 546, 615
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	3 cut(s)	76, 141, 217
Vha464I	CTTAAG	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	106
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	1 cut(s)	225
XspI	CTAG	2 cut(s)	5, 288
ZrmI	AGTACT	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.