Rmu_co8025626.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8025626.1
OG0009676
Physical Location & Seq
Forward (+)
33 .. 419
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8025626.1_g000001.1.cds

Sequence Viewer

Length: 387 bp
atgtgtgacaaccttttcgacagagatgtgagggtgctgttaaaaattgggtgggactctaatattgacgatagccttcagttttggaggaaggcagtatcaaattgtatgcgaaaaaaatttgtggcgtcccttaattatcaacagaagaatttggcggagcagtcattcagagctacttgtgttgaggaacaagcggatgatccatcatcattggaggttgcagaagcagctcatgttggaaagtcacctgctcgttggttccatctgagttggattgacacatcactccgtttgtggcagaagagtaatgtagaaaagaaccctgttatgattgaggatagcgattttacctgcagctcatgcatcacaactttttgtatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.76

Weight (kDa)

5.33

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc36I ACCTGC 2 cut(s) 259, 362
AciI CCGC 2 cut(s) 158, 197
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 2 cut(s) 119, 151
AcuI CTGAAG 1 cut(s) 62
AcyI GRCGYC 1 cut(s) 128
AluBI AGCT 3 cut(s) 176, 233, 360
AluI AGCT 3 cut(s) 176, 233, 360
AlwI GGATC 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 230, 357
ApoI RAATTY 2 cut(s) 119, 151
ArsI GACNNNNNNTTYG 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 240
BbvI GCAGC 2 cut(s) 242, 369
BccI CCATC 2 cut(s) 214, 273
BfmI CTRYAG 1 cut(s) 355
BfuAI ACCTGC 2 cut(s) 259, 362
BisI GCNGC 2 cut(s) 231, 358
BlsI GCNGC 2 cut(s) 232, 359
BmiI GGNNCC 1 cut(s) 263
BmsI GCATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 128
BseGI GGATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 242, 369
BslFI GGGAC 2 cut(s) 68, 115
BsmFI GGGAC 2 cut(s) 68, 115
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 2 cut(s) 158, 197
BspCNI CTCAG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 359
BspMI ACCTGC 2 cut(s) 259, 362
BspPI GGATC 1 cut(s) 197
BssMI GATC 1 cut(s) 202
BssNI GRCGYC 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 230, 363
BstSFI CTRYAG 1 cut(s) 355
BstV1I GCAGC 2 cut(s) 242, 369
BtsCI GGATG 1 cut(s) 205
BveI ACCTGC 2 cut(s) 259, 362
CseI GACGC 1 cut(s) 117
CviAII CATG 2 cut(s) 236, 363
CviJI RGCY 4 cut(s) 75, 176, 233, 360
CviKI_1 RGCY 4 cut(s) 75, 176, 233, 360
DdeI CTNAG 1 cut(s) 269
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
EciI GGCGGA 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 368
FaeI CATG 2 cut(s) 239, 366
FaiI YATR 6 cut(s) 110, 237, 332, 364, 383, 385
FaqI GGGAC 2 cut(s) 68, 115
FatI CATG 2 cut(s) 235, 362
Fnu4HI GCNGC 2 cut(s) 231, 358
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 2 cut(s) 231, 358
GluI GCNGC 2 cut(s) 231, 358
HgaI GACGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 2 cut(s) 239, 366
HinfI GANTC 1 cut(s) 56
HphI GGTGA 1 cut(s) 240
Hpy188I TCNGA 2 cut(s) 173, 270
HpyAV CCTTC 2 cut(s) 85, 86
HpyCH4V TGCA 3 cut(s) 224, 357, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 363
HpyF3I CTNAG 1 cut(s) 269
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 2 cut(s) 239, 366
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 3 cut(s) 264, 339, 367
Lsp1109I GCAGC 2 cut(s) 242, 369
LweI GCATC 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 5, 246
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 2 cut(s) 160, 316
MluCI AATT 5 cut(s) 45, 103, 119, 136, 151
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 2 cut(s) 220, 254
MnlI CCTC 5 cut(s) 24, 81, 181, 211, 331
Mph1103I ATGCAT 1 cut(s) 368
MseI TTAA 2 cut(s) 41, 135
MwoI GCNNNNNNNGC 2 cut(s) 230, 363
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 239, 366
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 2 cut(s) 5, 246
NsiI ATGCAT 1 cut(s) 368
PaqCI CACCTGC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 232, 359
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 263
PstI CTGCAG 1 cut(s) 359
SaqAI TTAA 2 cut(s) 41, 135
SatI GCNGC 2 cut(s) 231, 358
Sau3AI GATC 1 cut(s) 202
SchI GAGTC 1 cut(s) 50
SetI ASST 7 cut(s) 15, 178, 222, 235, 253, 356, 362
SfaNI GCATC 1 cut(s) 375
SfcI CTRYAG 1 cut(s) 355
SgeI CNNG 8 cut(s) 192, 206, 248, 263, 267, 338, 366, 375
Sse9I AATT 5 cut(s) 45, 103, 119, 136, 151
SsiI CCGC 2 cut(s) 158, 197
SspI AATATT 1 cut(s) 64
TaqI TCGA 1 cut(s) 18
TasI AATT 5 cut(s) 45, 103, 119, 136, 151
Tru1I TTAA 2 cut(s) 41, 135
Tru9I TTAA 2 cut(s) 41, 135
TseFI GTSAC 2 cut(s) 5, 246
TseI GCWGC 2 cut(s) 230, 357
Tsp45I GTSAC 2 cut(s) 5, 246
TspGWI ACGGA 1 cut(s) 281
XapI RAATTY 2 cut(s) 119, 151
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.