Rmu_sc0000517.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000517.1
OG0009676
Physical Location & Seq
Forward (+)
30919 .. 31239
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000517.1_g000007.1.cds

Sequence Viewer

Length: 321 bp
atgcgaaaaaaagttgtggcgtcacttaattatcaacagaagaagatggcagagcagtcgtccatagctacttgtgttgaggaacaagtggatgatccatcgtcattggaggttgcagaagcagcacatgttggaaagtcacctgctcgttggttccatctgagttggattgacatatcaatccgtttgtggcacaagagtctagacaagtgccctattatgatcgaggatggcgaatttacctgcagctcatgtggttgcagctcatatgtgaacaccccagaatccctttgtctatccctttatagcagaaagcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.97

Weight (kDa)

6.81

Isoelectric Point (pI)

65.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 151
Acc36I ACCTGC 2 cut(s) 151, 251
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 20
AflIII ACRYGT 1 cut(s) 127
AluBI AGCT 3 cut(s) 68, 249, 264
AluI AGCT 3 cut(s) 68, 249, 264
AlwI GGATC 1 cut(s) 89
ApeKI GCWGC 3 cut(s) 122, 246, 261
ApoI RAATTY 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 215
BbvI GCAGC 3 cut(s) 134, 258, 273
BccI CCATC 4 cut(s) 40, 106, 165, 224
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 244
BfuAI ACCTGC 2 cut(s) 151, 251
BisI GCNGC 3 cut(s) 123, 247, 262
BlsI GCNGC 3 cut(s) 124, 248, 263
BmiI GGNNCC 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 20
BseGI GGATG 2 cut(s) 97, 235
BseMII CTCAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 3 cut(s) 134, 258, 273
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 2 cut(s) 94, 222
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 155
BspMAI CTGCAG 1 cut(s) 248
BspMI ACCTGC 2 cut(s) 151, 251
BspPI GGATC 1 cut(s) 89
BssMI GATC 2 cut(s) 94, 222
BssNI GRCGYC 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 97, 235
BstKTI GATC 2 cut(s) 97, 225
BstMBI GATC 2 cut(s) 94, 222
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 3 cut(s) 134, 258, 273
BtsCI GGATG 2 cut(s) 97, 235
BveI ACCTGC 2 cut(s) 151, 251
CseI GACGC 1 cut(s) 9
CviAII CATG 2 cut(s) 128, 252
CviJI RGCY 3 cut(s) 68, 249, 264
CviKI_1 RGCY 3 cut(s) 68, 249, 264
DdeI CTNAG 1 cut(s) 161
DpnI GATC 2 cut(s) 96, 224
DpnII GATC 2 cut(s) 94, 222
FaeI CATG 2 cut(s) 131, 255
FaiI YATR 8 cut(s) 65, 129, 176, 221, 253, 268, 270, 306
FatI CATG 2 cut(s) 127, 251
FauNDI CATATG 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 123, 247, 262
FokI GGATG 2 cut(s) 104, 242
Fsp4HI GCNGC 3 cut(s) 123, 247, 262
FspBI CTAG 1 cut(s) 203
GluI GCNGC 3 cut(s) 123, 247, 262
HgaI GACGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 2 cut(s) 131, 255
HinfI GANTC 2 cut(s) 199, 284
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 274
HpyCH4V TGCA 3 cut(s) 116, 246, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 2 cut(s) 131, 255
Kzo9I GATC 2 cut(s) 94, 222
LpnPI CCDG 3 cut(s) 156, 256, 294
Lsp1109I GCAGC 3 cut(s) 134, 258, 273
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 21, 138
MalI GATC 2 cut(s) 96, 224
MboI GATC 2 cut(s) 94, 222
MboII GAAGA 2 cut(s) 52, 55
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 2 cut(s) 28, 236
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 2 cut(s) 112, 146
MnlI CCTC 3 cut(s) 73, 103, 220
MseI TTAA 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeI CATATG 1 cut(s) 268
NdeII GATC 2 cut(s) 94, 222
NlaIII CATG 2 cut(s) 131, 255
NlaIV GGNNCC 1 cut(s) 155
NmuCI GTSAC 2 cut(s) 21, 138
NspI RCATGY 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 151
PciI ACATGT 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 3 cut(s) 124, 248, 263
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PscI ACATGT 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 155
PstI CTGCAG 1 cut(s) 248
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 3 cut(s) 123, 247, 262
Sau3AI GATC 2 cut(s) 94, 222
SchI GAGTC 1 cut(s) 208
SduI GDGCHC 1 cut(s) 215
SetI ASST 6 cut(s) 70, 114, 145, 245, 251, 266
SfcI CTRYAG 1 cut(s) 244
Sse9I AATT 2 cut(s) 28, 236
SspMI CTAG 1 cut(s) 203
TaqI TCGA 1 cut(s) 225
TasI AATT 2 cut(s) 28, 236
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseFI GTSAC 2 cut(s) 21, 138
TseI GCWGC 3 cut(s) 122, 246, 261
Tsp45I GTSAC 2 cut(s) 21, 138
TspGWI ACGGA 1 cut(s) 173
XapI RAATTY 1 cut(s) 236
XbaI TCTAGA 1 cut(s) 202
XceI RCATGY 1 cut(s) 131
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.