Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009676

Physical Location & Seq

Genomic Coordinates Forward (+)

5352638 .. 5353885

Gene Structure 1248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0068900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGTAGAGTTATGCAAGATGTCAGAAGAGATGGTGGTGCAAATCCTATCAAGGATGCCTCCTAAATCTCTAATGCGATTCAAGTGTATCCACAAGTCATGGTATTCTACGATCAATGATCCACAATTTGCAGCTAAACATCTTCACTTTTACAATAATCCATCTTCCTCCACTGCGTTCCTTGTCAAGCGTCCTGTCATCCTCAGAAGTGAAACAAGCAATGAGAACGTTGTACTTTCATATCTTCGTCTTGAAAATTATAGTAATGGTGACGATGAAGACCTTCATTTTGTAGTTGAGGACCTCATTTTCCCACCTTTTAAGGGTCTAAAGACTAGGGGCCAATTTATTGAGCTCCCTGGACGTGATGATTCTGTGTATATCAATAGTCATTGTGATGGCATTATTTTTCTAACTTTGTATGCCAGCGACCTTGTTTTGTACAATCCAGCAATCAAAGAATTCAAGATTATTCCGGCGTCATGTTGTCAAGATTGTTTCTGGAGCTTGGTGGGATTCGGATATGATCTGAGATCCAAAGACTACATTATTCTAGAAATTGCTTGTTATGGTGAGACAAATTATCACCATCTTCAGCGTGTCATTGTTGATCCTCCTAAAGCTGCAGTTTACACACTAGGCATTGATTCTTGGAGAGAGATTAAGACTGATTACTTACAAACTGAAGATACCTACTTTTGGCCTACAGCATTCGATTTGTACTCGAAGGGAATTTTCTATTGGTTTGGTTATGAGGAAAAGAAGGAGTTCTTGGATGACATGGAAAGATGTGAGGAAAGAAACAAGCAAGTGATGATTTTCTATGATACGGGAGATCAGCTATTTCATATTGCAATGCTTCCGGATAGTTTCAATGAGCCTGCATGCGGCGTACATGATATTCATCTTACATTGTTAGATAAGTCAATTGCTCTTTATGGTTTTAGCATTTTTGAATCGATTCATTCCATTCAAATATGGGTGACAGATGACATTCGAGAGGAATCTTGGACAAAATACTTGTCCTTAGAGCCGGTAGATGCTGTTCGGAGGTCATTGGCCTTTTGGAAGATCAACAAGGTTTTTATGATTGCCAAAGATGGACGTGTTGTTCTCTACAACCTCGTTTCCGGAAAGCTTAAGTATTTTCCTATTCATGGCCTGCACCTAGGAGATGATATTCAAGGCATTGTTTGTATGGATAGTATAGTTTCAGTTATGAGAAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

410

Amino Acids

47.72

Weight (kDa)

5.41

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 43	8.9e-08	F-box domain
FBA_1	PF07734	113 - 373	1.6e-21	F-box associated beta propeller domain
FBA_3	PF08268	120 - 346	7.3e-09	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02680 FvH4_4g35032 FvH4_6g12031
rosa_chinensis	RchiOBHm_Chr3g0463881
rosa_laevigata	RLG00000024739 RLG00000024742 RLG00000024745 RLG00000024748
rosa_multiflora	Rmu_co8025626.1_g000001 Rmu_co8196170.1_g000001 Rmu_sc0000517.1_g000007 Rmu_sc0004796.1_g000001 Rmu_sc0042095.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416210
rosa_rugosa	Rorug03G0068800 Rorug03G0068900
rosa_samantha	Rh3AG125800 Rh3BG129900 Rh3CG132400 Rh3DG131000 Rh3DG131100
rosa_wichuraiana	Rw3G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	862, 1130
AciI	CCGC	1 cut(s)	888
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	3 cut(s)	113, 528, 605
AcsI	RAATTY	2 cut(s)	461, 732
AcuI	CTGAAG	2 cut(s)	578, 705
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	4 cut(s)	234, 443, 722, 894
AfiI	CCNNNNNNNGG	4 cut(s)	323, 699, 887, 1157
AflII	CTTAAG	1 cut(s)	1139
AflIII	ACRYGT	1 cut(s)	1105
AgsI	TTSAA	7 cut(s)	82, 254, 466, 874, 956, 974, 1184
AjiI	CACGTC	2 cut(s)	365, 1106
AjnI	CCWGG	1 cut(s)	358
AjuI	GAANNNNNNNTTGG	4 cut(s)	724, 755, 756, 787
AloI	GAACNNNNNNTCC	2 cut(s)	1095, 1127
AluBI	AGCT	6 cut(s)	134, 355, 507, 623, 841, 1138
AluI	AGCT	6 cut(s)	134, 355, 507, 623, 841, 1138
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	3 cut(s)	113, 528, 605
Aor13HI	TCCGGA	2 cut(s)	862, 1130
AoxI	GGCC	4 cut(s)	340, 701, 1059, 1159
ApeKI	GCWGC	2 cut(s)	131, 623
ApoI	RAATTY	2 cut(s)	461, 732
ArsI	GACNNNNNNTTYG	4 cut(s)	272, 304, 1007, 1039
Asp700I	GAANNNNTTC	3 cut(s)	282, 767, 960
AspA2I	CCTAGG	1 cut(s)	1168
AspS9I	GGNCC	2 cut(s)	301, 340
AsuHPI	GGTGA	4 cut(s)	281, 578, 584, 994
AvaII	GGWCC	1 cut(s)	301
AvrII	CCTAGG	1 cut(s)	1168
BanII	GRGCYC	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	143, 610
BccI	CCATC	5 cut(s)	25, 169, 392, 597, 1094
BciT130I	CCWGG	1 cut(s)	360
BciVI	GTATCC	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	4 cut(s)	336, 554, 638, 1169
BfmI	CTRYAG	2 cut(s)	624, 705
BfrI	CTTAAG	1 cut(s)	1139
BfuI	GTATCC	1 cut(s)	98
BisI	GCNGC	3 cut(s)	132, 624, 889
BlnI	CCTAGG	1 cut(s)	1168
BlsI	GCNGC	3 cut(s)	133, 625, 890
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	301
BmgBI	CACGTC	2 cut(s)	365, 1106
BmgT120I	GGNCC	2 cut(s)	301, 340
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	45, 1030
BpiI	GAAGAC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	523
Bsa29I	ATCGAT	1 cut(s)	959
BsaBI	GATNNNNATC	1 cut(s)	903
BsaHI	GRCGYC	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	358, 1168
BsaWI	WCCGGW	2 cut(s)	862, 1130
Bsc4I	CCNNNNNNNGG	4 cut(s)	323, 699, 887, 1157
Bse118I	RCCGGY	1 cut(s)	1033
Bse3DI	GCAATG	2 cut(s)	226, 861
Bse8I	GATNNNNATC	1 cut(s)	903
BseAI	TCCGGA	2 cut(s)	862, 1130
BseBI	CCWGG	1 cut(s)	360
BseCI	ATCGAT	1 cut(s)	959
BseDI	CCNNGG	2 cut(s)	358, 1168
BseGI	GGATG	3 cut(s)	60, 198, 781
BseJI	GATNNNNATC	1 cut(s)	903
BseLI	CCNNNNNNNGG	4 cut(s)	323, 699, 887, 1157
BseMI	GCAATG	2 cut(s)	226, 861
BseMII	CTCAG	2 cut(s)	217, 521
BseXI	GCAGC	2 cut(s)	143, 610
BsgI	GTGCAG	1 cut(s)	1148
BshFI	GGCC	4 cut(s)	342, 703, 1061, 1161
BshVI	ATCGAT	1 cut(s)	959
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	4 cut(s)	476, 863, 1034, 1131
BslI	CCNNNNNNNGG	4 cut(s)	323, 699, 887, 1157
BsmAI	GTCTC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	4 cut(s)	342, 703, 1061, 1161
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp13I	TCCGGA	2 cut(s)	862, 1130
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	7 cut(s)	111, 118, 526, 533, 610, 835, 1071
BspACI	CCGC	1 cut(s)	888
BspANI	GGCC	4 cut(s)	342, 703, 1061, 1161
BspCNI	CTCAG	2 cut(s)	216, 522
BspDI	ATCGAT	1 cut(s)	959
BspEI	TCCGGA	2 cut(s)	862, 1130
BspLI	GGNNCC	1 cut(s)	341
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	3 cut(s)	113, 528, 605
BspTI	CTTAAG	1 cut(s)	1139
BsrDI	GCAATG	2 cut(s)	226, 861
BsrFI	RCCGGY	1 cut(s)	1033
BsrGI	TGTACA	1 cut(s)	441
BssAI	RCCGGY	1 cut(s)	1033
BssECI	CCNNGG	2 cut(s)	358, 1168
BssMI	GATC	7 cut(s)	111, 118, 526, 533, 610, 835, 1071
BssNI	GRCGYC	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	1168
Bst2UI	CCWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	479
BstAFI	CTTAAG	1 cut(s)	1139
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	4 cut(s)	427, 882, 886, 1163
BstDEI	CTNAG	3 cut(s)	203, 530, 1027
BstF5I	GGATG	3 cut(s)	60, 198, 781
BstKTI	GATC	7 cut(s)	114, 121, 529, 536, 613, 838, 1074
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	7 cut(s)	111, 118, 526, 533, 610, 835, 1071
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	888
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	2 cut(s)	624, 705
BstV1I	GCAGC	2 cut(s)	143, 610
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
Bsu15I	ATCGAT	1 cut(s)	959
BsuI	GTATCC	1 cut(s)	98
BsuRI	GGCC	4 cut(s)	342, 703, 1061, 1161
BsuTUI	ATCGAT	1 cut(s)	959
BtrI	CACGTC	2 cut(s)	365, 1106
BtsCI	GGATG	3 cut(s)	60, 198, 781
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	4 cut(s)	427, 882, 886, 1163
Cfr10I	RCCGGY	1 cut(s)	1033
Cfr13I	GGNCC	2 cut(s)	301, 340
ClaI	ATCGAT	1 cut(s)	959
CseI	GACGC	2 cut(s)	179, 468
Csp6I	GTAC	4 cut(s)	233, 442, 721, 893
CviAII	CATG	6 cut(s)	99, 483, 781, 885, 896, 1157
CviQI	GTAC	4 cut(s)	233, 442, 721, 893
DdeI	CTNAG	3 cut(s)	203, 530, 1027
DpnI	GATC	7 cut(s)	113, 120, 528, 535, 612, 837, 1073
DpnII	GATC	7 cut(s)	111, 118, 526, 533, 610, 835, 1071
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	1168
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	578, 705
EcoICRI	GAGCTC	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	1168
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	1168
FaeI	CATG	6 cut(s)	102, 486, 784, 888, 899, 1160
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FatI	CATG	6 cut(s)	98, 482, 780, 884, 895, 1156
Fnu4HI	GCNGC	3 cut(s)	132, 624, 889
FokI	GGATG	3 cut(s)	67, 185, 788
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	132, 624, 889
FspBI	CTAG	4 cut(s)	336, 554, 638, 1169
GluI	GCNGC	3 cut(s)	132, 624, 889
GsuI	CTGGAG	1 cut(s)	523
HaeIII	GGCC	4 cut(s)	342, 703, 1061, 1161
HapII	CCGG	4 cut(s)	476, 863, 1034, 1131
HgaI	GACGC	2 cut(s)	179, 468
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	6 cut(s)	102, 486, 784, 888, 899, 1160
HindIII	AAGCTT	1 cut(s)	1136
HinfI	GANTC	7 cut(s)	78, 371, 516, 647, 956, 961, 1004
HpaII	CCGG	4 cut(s)	476, 863, 1034, 1131
HphI	GGTGA	4 cut(s)	281, 578, 584, 994
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	5 cut(s)	25, 206, 521, 531, 1050
Hpy188III	TCNNGA	8 cut(s)	251, 466, 491, 502, 554, 863, 998, 1131
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	3 cut(s)	293, 721, 757
HpyCH4IV	ACGT	3 cut(s)	228, 364, 1105
HpyCH4V	TGCA	7 cut(s)	15, 40, 131, 626, 854, 884, 1165
HpyF3I	CTNAG	3 cut(s)	203, 530, 1027
HpySE526I	ACGT	3 cut(s)	228, 364, 1105
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	6 cut(s)	102, 486, 784, 888, 899, 1160
Kpn2I	TCCGGA	2 cut(s)	862, 1130
Kzo9I	GATC	7 cut(s)	111, 118, 526, 533, 610, 835, 1071
LmnI	GCTCC	2 cut(s)	360, 504
Lsp1109I	GCAGC	2 cut(s)	143, 610
LweI	GCATC	2 cut(s)	45, 1030
MaeI	CTAG	4 cut(s)	336, 554, 638, 1169
MaeII	ACGT	3 cut(s)	228, 364, 1105
MaeIII	GTNAC	2 cut(s)	269, 982
MalI	GATC	7 cut(s)	113, 120, 528, 535, 612, 837, 1073
MboI	GATC	7 cut(s)	111, 118, 526, 533, 610, 835, 1071
MboII	GAAGA	8 cut(s)	38, 134, 156, 236, 290, 584, 698, 1081
MfeI	CAATTG	1 cut(s)	927
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	8 cut(s)	125, 256, 344, 461, 558, 580, 732, 927
MroI	TCCGGA	2 cut(s)	862, 1130
MroXI	GAANNNNTTC	3 cut(s)	282, 767, 960
MseI	TTAA	3 cut(s)	321, 663, 1140
MslI	CAYNNNNRTG	1 cut(s)	396
MspCI	CTTAAG	1 cut(s)	1139
MspI	CCGG	4 cut(s)	476, 863, 1034, 1131
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	927
Mva1269I	GAATGC	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	360
NdeII	GATC	7 cut(s)	111, 118, 526, 533, 610, 835, 1071
NlaIII	CATG	6 cut(s)	102, 486, 784, 888, 899, 1160
NlaIV	GGNNCC	1 cut(s)	341
NmuCI	GTSAC	2 cut(s)	269, 982
NspI	RCATGY	1 cut(s)	888
PaeI	GCATGC	1 cut(s)	888
PctI	GAATGC	1 cut(s)	710
PdmI	GAANNNNTTC	3 cut(s)	282, 767, 960
PfeI	GAWTC	7 cut(s)	78, 371, 516, 647, 956, 961, 1004
PkrI	GCNGC	3 cut(s)	133, 625, 890
PpuMI	RGGWCCY	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	357
Psp1406I	AACGTT	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	2 cut(s)	301, 340
PspPPI	RGGWCCY	1 cut(s)	301
PsrI	GAACNNNNNNTAC	2 cut(s)	1029, 1061
PstI	CTGCAG	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	4 cut(s)	234, 443, 722, 894
RsaNI	GTAC	4 cut(s)	233, 442, 721, 893
RseI	CAYNNNNRTG	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	321, 663, 1140
SatI	GCNGC	3 cut(s)	132, 624, 889
Sau3AI	GATC	7 cut(s)	111, 118, 526, 533, 610, 835, 1071
Sau96I	GGNCC	2 cut(s)	301, 340
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	2 cut(s)	45, 1030
SfcI	CTRYAG	2 cut(s)	624, 705
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	1139
SmoI	CTYRAG	1 cut(s)	1139
SphI	GCATGC	1 cut(s)	888
Sse9I	AATT	8 cut(s)	125, 256, 344, 461, 558, 580, 732, 927
SsiI	CCGC	1 cut(s)	888
SspMI	CTAG	4 cut(s)	336, 554, 638, 1169
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	1168
TaiI	ACGT	3 cut(s)	231, 367, 1108
TaqI	TCGA	4 cut(s)	714, 725, 959, 997
TasI	AATT	8 cut(s)	125, 256, 344, 461, 558, 580, 732, 927
TatI	WGTACW	3 cut(s)	232, 441, 720
TauI	GCSGC	1 cut(s)	891
TfiI	GAWTC	7 cut(s)	78, 371, 516, 647, 956, 961, 1004
Tru1I	TTAA	3 cut(s)	321, 663, 1140
Tru9I	TTAA	3 cut(s)	321, 663, 1140
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	2 cut(s)	269, 982
TseI	GCWGC	2 cut(s)	131, 623
Tsp45I	GTSAC	2 cut(s)	269, 982
TspDTI	ATGAA	7 cut(s)	228, 275, 291, 836, 893, 953, 1145
TspRI	CASTG	1 cut(s)	178
Vha464I	CTTAAG	1 cut(s)	1139
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	2 cut(s)	461, 732
XbaI	TCTAGA	1 cut(s)	553
XceI	RCATGY	1 cut(s)	888
XmaJI	CCTAGG	1 cut(s)	1168
XmnI	GAANNNNTTC	3 cut(s)	282, 767, 960
XspI	CTAG	4 cut(s)	336, 554, 638, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.