Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009676

Physical Location & Seq

Genomic Coordinates Forward (+)

38690562 .. 38694552

Gene Structure 3991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGACCTATAACTTGAAATTGGGTCTGTTTAGATACCAGTGGCAGAGCTTAGTACTTAGTCACCTCGATCAGTCTTTCGCTCCTAGTATAAAGTTCCATGGCCGCCAGAAACCGAACGAGGGCCTCTTCTCTCTGTCTGATTCATCAGGCATCCTAAGATTCAACCACGAGTTGGTTGAAAGGAAAGTTGCTCTTTATCGATTTGTGACGATGATGCGGCTGGAGACGGATTGTCTTCCGATACATATTGAGTCTGATGATGGCGGTGATGAGGTTGCAAATAAAATTGAGATGGCAAAAAGGTGCAAGGTAAAGATTGATCATGGGCGAACAAGAAGCAGCATAGATCATCATCAGGAGATCAAGGGTGCTTCTGCTTCTTGTTTGTGTGATGTTTGTGCCAACTTTGCTGTGACATTCAGTTTTACCGATGATGAAATTGAAGGTTTACGGAAGGTCAATACTCATGAAATGCTACACCACAGAAAACTCCACCTGGTACTTAATCTAGAACGCACCCTGCTAGATCACGCGCTACTCAGTGATCTGACCCCTGAAGAAGAAGAATATGTAAAGACTTTAACGATGGATCATCCTCTGCCTTTGCAAGATGTTCTCAAAGTGCAACATTGTCCCAAAATGAAGCCTATAATTGTCAAGCTTAGGCCCTTTGCGAGAGCCTTTCTGAAGGAAGCCAGCGACATGTTTGAAATTTATGCATGCTCAAATGTTTCTCGATATCTTGTGTGGAAAATGGTTGAGCTACTCGATCCTACAAATGAGTACTTTGGTCGTAGAGTGATATCGCGTGAGGATTTCGTTAGCACCTTTTCAGGAAAGAAGTGTCTTGATCTTGTGCTTGCCCAAGAGTCTACTGTTCTGATCCTTGATCATAAGCAAGAGACATGGACGGAGCAAAATCAAAAAAATATAGTCCTAACGCAAAAGTATCAGTTCTTTAAAGGAAGGAGTGAACAGAACAGTGAGTTCAAGTCCCATTGTGAGTTGAAAACTGATGAGGGGGCGTATCTTGCAGTGATCCTTCAACATCTTAAGCTAATTCACAGCAGCTTCTTTGATGATCAAGTGATGTGTGACAACCTTATTGAAAGAGATGTGAGGAAGGTGTTGAAAAATCTTCGGCAACAGAAGCTGGCAGAGCAGTTGGGAACTACTTGTGATGAACAAATGGATCTATCGACCACACAGGTGGCTGGGGCTCACGTTGGACTACCTGCTCGTTCATTGCAAATGGATTTTCCTGCTCGCTCACAGGAGGTTGCAAGTAATTATGAGATGGCAAAAAGGCGAAACTTAACGATTGATCATGGGGGAACAACAAGCAGCACAGATCATCAGGAGATCGGGGTTGTTTCTGCTTCTTCTTTGTGTGATTATTGTGCCAACTTTGCTGACAGATACGGTTTTCTACACGAGGGGCTCTTAACCACCCTAAGTGATGAACACATTTACCGTTTGCGCAAGCACAACACACAGAAAATGCTAGTCCACAAAAAACTCCACCTGGTAATTAATCTGGATCACACCTTTCTGAGTCACACAAGGCTCAGTGATCTGACCCCAGAAGAAGCAGAAAATATAAAGGTCCAAGAAGATTCCCAAGATATTTTCACAGTGCGAGTTCCTCCAAAAATGAGACCTATTATTATCAAGTTCAGGCCCTTTCTGAGAACCTTTCTGAAGGAAGCCTGTGACTTTTTCGAAATTTATGCATATGCAAATGCTCCTCGATCTCTTGTGTGGAAAATTGTTGAGCTGCTCGATCCTAGAAATGAGTACTTCGGTCGTAGAGTGATATCGCCTGAGAACTTTTGTAGCACCCACCGAGGAAAGAAGTCTCTTGATCTTGTGCTTGGTCAAAAGTCTGCTGTTTTGGTGGTTGATGATGAAGAAGACGGATGGCAGGAGAAAAGTCGAAATAATGTAATGCTACTGGGACAGTATTGTTTCTTCAAAAAGACGAGTGGCAAGAAGAGAAAACGGAAGTCCCTTTGTGAGTTGAAATCTGACGAACGGACTGCTTCTCTTGCATCTCTTCTTAAACAGCTTAAGCAAATACACAACAGGTTCTTTAATGATGAAATAATGTGTGACAACCTTTTCGACAGAGATGTGAGGGTGCTGTTAAAAATTGAGTGGGACTCTAATAATGACGATAGCCTTCAGTTTTGGAGGAAGGCAGTATCAAATTGTATGCGCAAAAAATTTGTGGCGTCCCTTAATTGTCAACAGAAGAATCTGGCGGAGCAGTCATCCAGAGCTACTTGTGTTGAGGAACGAGTGGATGATCCATCGTCATTGGAGGTTGCAGAAGCAGCTCATGTTGGAAAGTCACCTGCTCGTTGGTTCCATCTGAGTTGGATTGACGTATCACTCCGTTTGTGGCAGAAGAGTAATGTAGAAAAGAACCCTGTTATGATTGAGGATAGAGATTTTACCTGCAGCTCATGTGGTTGCAGCTCATATGTGAACACCCCGGAATCCCTTTGTCGATCCCTTTATAGCAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

845

Amino Acids

97.54

Weight (kDa)

7.17

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	165 - 333	2e-16	NLI interacting factor-like phosphatase
NIF	PF03031	508 - 655	2.8e-16	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02680 FvH4_4g35032 FvH4_6g12031
rosa_chinensis	RchiOBHm_Chr3g0463881
rosa_laevigata	RLG00000024739 RLG00000024742 RLG00000024745 RLG00000024748
rosa_multiflora	Rmu_co8025626.1_g000001 Rmu_co8196170.1_g000001 Rmu_sc0000517.1_g000007 Rmu_sc0004796.1_g000001 Rmu_sc0042095.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416210
rosa_rugosa	Rorug03G0068800 Rorug03G0068900
rosa_samantha	Rh3AG125800 Rh3BG129900 Rh3CG132400 Rh3DG131000 Rh3DG131100
rosa_wichuraiana	Rw3G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2365
Acc16I	TGCGCA	2 cut(s)	1481, 2219
Acc36I	ACCTGC	3 cut(s)	1243, 2365, 2468
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	872
AccII	CGCG	2 cut(s)	533, 808
AciI	CCGC	4 cut(s)	103, 217, 264, 2264
AclWI	GGATC	9 cut(s)	597, 764, 877, 1033, 1200, 1548, 1778, 2303, 2508
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	3 cut(s)	711, 1725, 2225
AcuI	CTGAAG	4 cut(s)	576, 707, 1721, 2168
AcyI	GRCGYC	1 cut(s)	2234
AfaI	GTAC	4 cut(s)	54, 501, 785, 1799
AfiI	CCNNNNNNNGG	2 cut(s)	119, 172
AflII	CTTAAG	2 cut(s)	1052, 2069
AflIII	ACRYGT	1 cut(s)	702
AhdI	GACNNNNNGTC	1 cut(s)	231
AjnI	CCWGG	2 cut(s)	495, 1524
AleI	CACNNNNGTG	1 cut(s)	1208
Alw26I	GTCTC	4 cut(s)	218, 896, 1651, 1863
AlwI	GGATC	9 cut(s)	597, 764, 877, 1033, 1200, 1548, 1778, 2303, 2508
AlwNI	CAGNNNCTG	1 cut(s)	1153
AoxI	GGCC	4 cut(s)	100, 121, 665, 1679
ApeKI	GCWGC	7 cut(s)	339, 1068, 1344, 1777, 2336, 2463, 2478
ApoI	RAATTY	3 cut(s)	711, 1725, 2225
ArsI	GACNNNNNNTTYG	2 cut(s)	2105, 2137
AseI	ATTAAT	1 cut(s)	1533
AspLEI	GCGC	3 cut(s)	535, 1482, 2220
AspS9I	GGNCC	4 cut(s)	121, 666, 1606, 1680
AsuC2I	CCSGG	1 cut(s)	2498
AsuHPI	GGTGA	3 cut(s)	53, 278, 2346
AsuII	TTCGAA	1 cut(s)	1722
AvaII	GGWCC	1 cut(s)	1606
BanII	GRGCYC	2 cut(s)	1222, 1443
BarI	GAAGNNNNNNTAC	2 cut(s)	1955, 1987
BauI	CACGAG	2 cut(s)	167, 1433
BbsI	GAAGAC	2 cut(s)	227, 1920
BbvI	GCAGC	7 cut(s)	351, 1080, 1356, 1764, 2348, 2475, 2490
BccI	CCATC	7 cut(s)	254, 286, 580, 1291, 1914, 2320, 2379
BcgI	CGANNNNNNTGC	4 cut(s)	1712, 1746, 2021, 2055
BciT130I	CCWGG	2 cut(s)	497, 1526
BclI	TGATCA	4 cut(s)	319, 889, 1081, 1324
BcnI	CCSGG	1 cut(s)	2498
BcoDI	GTCTC	4 cut(s)	218, 896, 1651, 1863
BfaI	CTAG	5 cut(s)	84, 509, 524, 1505, 1788
BfmI	CTRYAG	1 cut(s)	2461
BfrI	CTTAAG	2 cut(s)	1052, 2069
BfuAI	ACCTGC	3 cut(s)	1243, 2365, 2468
BisI	GCNGC	9 cut(s)	103, 218, 340, 1069, 1345, 1778, 2337, 2464, 2479
BlsI	GCNGC	9 cut(s)	104, 219, 341, 1070, 1346, 1779, 2338, 2465, 2480
BmcAI	AGTACT	3 cut(s)	54, 785, 1799
Bme1390I	CCNGG	3 cut(s)	497, 1526, 2498
Bme18I	GGWCC	1 cut(s)	1606
BmeRI	GACNNNNNGTC	1 cut(s)	231
BmgT120I	GGNCC	4 cut(s)	121, 666, 1606, 1680
BmiI	GGNNCC	1 cut(s)	2369
BmrFI	CCNGG	3 cut(s)	497, 1526, 2498
BmrI	ACTGGG	1 cut(s)	1964
BmsI	GCATC	3 cut(s)	159, 204, 2060
BmuI	ACTGGG	1 cut(s)	1964
BpiI	GAAGAC	2 cut(s)	227, 1920
BplI	GAGNNNNNCTC	2 cut(s)	2147, 2179
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	662
Bpu14I	TTCGAA	1 cut(s)	1722
BpuMI	CCSGG	1 cut(s)	2498
Bsa29I	ATCGAT	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	2234
BsaI	GGTCTC	1 cut(s)	1651
BsaJI	CCNNGG	3 cut(s)	97, 1846, 2496
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 172
Bse1I	ACTGG	2 cut(s)	37, 1959
Bse3DI	GCAATG	1 cut(s)	1244
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	497, 1526
BseCI	ATCGAT	1 cut(s)	199
BseDI	CCNNGG	3 cut(s)	97, 1846, 2496
BseGI	GGATG	5 cut(s)	150, 592, 1925, 2273, 2311
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	119, 172
BseMI	GCAATG	1 cut(s)	1244
BseMII	CTCAG	6 cut(s)	553, 1544, 1582, 1679, 1815, 2366
BseNI	ACTGG	2 cut(s)	37, 1959
BseRI	GAGGAG	1 cut(s)	1737
BseXI	GCAGC	7 cut(s)	351, 1080, 1356, 1764, 2348, 2475, 2490
BseYI	CCCAGC	1 cut(s)	1214
Bsh1236I	CGCG	2 cut(s)	533, 808
Bsh1285I	CGRYCG	1 cut(s)	1807
BshFI	GGCC	4 cut(s)	102, 123, 667, 1681
BshVI	ATCGAT	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	1807
BsiSI	CCGG	1 cut(s)	2498
BslFI	GGGAC	6 cut(s)	618, 979, 1971, 1993, 2174, 2221
BslI	CCNNNNNNNGG	2 cut(s)	119, 172
BsmAI	GTCTC	4 cut(s)	218, 896, 1651, 1863
BsmBI	CGTCTC	1 cut(s)	218
BsmFI	GGGAC	6 cut(s)	618, 979, 1971, 1993, 2174, 2221
BsnI	GGCC	4 cut(s)	102, 123, 667, 1681
Bso31I	GGTCTC	1 cut(s)	1651
Bsp119I	TTCGAA	1 cut(s)	1722
Bsp1286I	GDGCHC	2 cut(s)	1222, 1443
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	4 cut(s)	103, 217, 264, 2264
BspANI	GGCC	4 cut(s)	102, 123, 667, 1681
BspCNI	CTCAG	6 cut(s)	552, 1545, 1581, 1680, 1816, 2367
BspDI	ATCGAT	1 cut(s)	199
BspFNI	CGCG	2 cut(s)	533, 808
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	2369
BspMAI	CTGCAG	1 cut(s)	2465
BspMI	ACCTGC	3 cut(s)	1243, 2365, 2468
BspPI	GGATC	9 cut(s)	597, 764, 877, 1033, 1200, 1548, 1778, 2303, 2508
BspT104I	TTCGAA	1 cut(s)	1722
BspTI	CTTAAG	2 cut(s)	1052, 2069
BspTNI	GGTCTC	1 cut(s)	1651
BsrDI	GCAATG	1 cut(s)	1244
BsrI	ACTGG	2 cut(s)	37, 1959
BssECI	CCNNGG	3 cut(s)	97, 1846, 2496
BssNI	GRCGYC	1 cut(s)	2234
BssSI	CACGAG	2 cut(s)	167, 1433
BssT1I	CCWWGG	1 cut(s)	97
Bst2BI	CACGAG	2 cut(s)	167, 1433
Bst2UI	CCWGG	2 cut(s)	497, 1526
Bst4CI	ACNGT	6 cut(s)	877, 983, 1424, 1475, 1636, 1962
Bst6I	CTCTTC	4 cut(s)	131, 1988, 2061, 2405
BstACI	GRCGYC	1 cut(s)	2234
BstAFI	CTTAAG	2 cut(s)	1052, 2069
BstBI	TTCGAA	1 cut(s)	1722
BstC8I	GCNNGC	6 cut(s)	697, 721, 861, 1155, 1267, 1484
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	5 cut(s)	150, 592, 1925, 2273, 2311
BstFNI	CGCG	2 cut(s)	533, 808
BstHHI	GCGC	3 cut(s)	535, 1482, 2220
BstMAI	GTCTC	4 cut(s)	218, 896, 1651, 1863
BstMCI	CGRYCG	1 cut(s)	1807
BstMWI	GCNNNNNNNGC	7 cut(s)	407, 1031, 1150, 1159, 1409, 2048, 2336
BstNI	CCWGG	2 cut(s)	497, 1526
BstNSI	RCATGY	2 cut(s)	706, 723
BstSCI	CCNGG	3 cut(s)	495, 1524, 2496
BstSFI	CTRYAG	1 cut(s)	2461
BstUI	CGCG	2 cut(s)	533, 808
BstV1I	GCAGC	7 cut(s)	351, 1080, 1356, 1764, 2348, 2475, 2490
BstV2I	GAAGAC	2 cut(s)	227, 1920
BstX2I	RGATCY	1 cut(s)	1192
BstXI	CCANNNNNNTGG	1 cut(s)	1210
BstYI	RGATCY	1 cut(s)	1192
Bsu15I	ATCGAT	1 cut(s)	199
BsuRI	GGCC	4 cut(s)	102, 123, 667, 1681
BsuTUI	ATCGAT	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	5 cut(s)	150, 592, 1925, 2273, 2311
BtsI	GCAGTG	1 cut(s)	1041
BtsIMutI	CAGTG	6 cut(s)	44, 547, 988, 1041, 1576, 1641
BveI	ACCTGC	3 cut(s)	1243, 2365, 2468
Cac8I	GCNNGC	6 cut(s)	697, 721, 861, 1155, 1267, 1484
CaiI	CAGNNNCTG	1 cut(s)	1153
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	3 cut(s)	535, 1482, 2220
Cfr13I	GGNCC	4 cut(s)	121, 666, 1606, 1680
ClaI	ATCGAT	1 cut(s)	199
CseI	GACGC	1 cut(s)	2223
CsiI	ACCWGGT	2 cut(s)	495, 1524
Csp6I	GTAC	4 cut(s)	53, 500, 784, 1798
CviAII	CATG	9 cut(s)	98, 323, 467, 703, 720, 906, 1328, 2342, 2469
CviQI	GTAC	4 cut(s)	53, 500, 784, 1798
DraI	TTTAAA	1 cut(s)	961
DriI	GACNNNNNGTC	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	4 cut(s)	131, 1988, 2061, 2405
Eam1105I	GACNNNNNGTC	1 cut(s)	231
EarI	CTCTTC	4 cut(s)	131, 1988, 2061, 2405
EciI	GGCGGA	1 cut(s)	2279
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	2 cut(s)	1222, 1443
Eco31I	GGTCTC	1 cut(s)	1651
Eco32I	GATATC	3 cut(s)	740, 804, 1818
Eco47I	GGWCC	1 cut(s)	1606
Eco57I	CTGAAG	4 cut(s)	576, 707, 1721, 2168
EcoO109I	RGGNCCY	3 cut(s)	121, 666, 1680
EcoRII	CCWGG	2 cut(s)	495, 1524
EcoRV	GATATC	3 cut(s)	740, 804, 1818
EcoT14I	CCWWGG	1 cut(s)	97
EcoT22I	ATGCAT	2 cut(s)	721, 1735
EcoT38I	GRGCYC	2 cut(s)	1222, 1443
ErhI	CCWWGG	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	218
FaeI	CATG	9 cut(s)	101, 326, 470, 706, 723, 909, 1331, 2345, 2472
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	6 cut(s)	618, 979, 1971, 1993, 2174, 2221
FatI	CATG	9 cut(s)	97, 322, 466, 702, 719, 905, 1327, 2341, 2468
FauNDI	CATATG	2 cut(s)	1735, 2485
FbaI	TGATCA	4 cut(s)	319, 889, 1081, 1324
FblI	GTMKAC	1 cut(s)	872
Fnu4HI	GCNGC	9 cut(s)	103, 218, 340, 1069, 1345, 1778, 2337, 2464, 2479
FokI	GGATG	5 cut(s)	137, 579, 1932, 2260, 2318
FriOI	GRGCYC	2 cut(s)	1222, 1443
Fsp4HI	GCNGC	9 cut(s)	103, 218, 340, 1069, 1345, 1778, 2337, 2464, 2479
FspBI	CTAG	5 cut(s)	84, 509, 524, 1505, 1788
FspI	TGCGCA	2 cut(s)	1481, 2219
GlaI	GCGC	3 cut(s)	534, 1481, 2219
GluI	GCNGC	9 cut(s)	103, 218, 340, 1069, 1345, 1778, 2337, 2464, 2479
GsaI	CCCAGC	1 cut(s)	1218
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	4 cut(s)	102, 123, 667, 1681
HapII	CCGG	1 cut(s)	2498
HgaI	GACGC	1 cut(s)	2223
HhaI	GCGC	3 cut(s)	535, 1482, 2220
Hin1I	GRCGYC	1 cut(s)	2234
Hin1II	CATG	9 cut(s)	101, 326, 470, 706, 723, 909, 1331, 2345, 2472
Hin6I	GCGC	3 cut(s)	533, 1480, 2218
HinP1I	GCGC	3 cut(s)	533, 1480, 2218
HincII	GTYRAC	1 cut(s)	2249
HindII	GTYRAC	1 cut(s)	2249
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	9 cut(s)	140, 159, 251, 869, 1555, 1616, 2162, 2257, 2501
HpaII	CCGG	1 cut(s)	2498
HphI	GGTGA	3 cut(s)	53, 278, 2346
Hpy166II	GTNNAC	6 cut(s)	449, 873, 974, 1510, 2249, 2491
Hpy8I	GTNNAC	6 cut(s)	449, 873, 974, 1510, 2249, 2491
HpyAV	CCTTC	9 cut(s)	437, 448, 682, 960, 1052, 1117, 1696, 2191, 2192
HpyCH4III	ACNGT	6 cut(s)	877, 983, 1424, 1475, 1636, 1962
HpyCH4IV	ACGT	2 cut(s)	1224, 2388
HpyF10VI	GCNNNNNNNGC	7 cut(s)	407, 1031, 1150, 1159, 1409, 2048, 2336
HpySE526I	ACGT	2 cut(s)	1224, 2388
Hsp92I	GRCGYC	1 cut(s)	2234
Hsp92II	CATG	9 cut(s)	101, 326, 470, 706, 723, 909, 1331, 2345, 2472
HspAI	GCGC	3 cut(s)	533, 1480, 2218
Ksp22I	TGATCA	4 cut(s)	319, 889, 1081, 1324
LmnI	GCTCC	4 cut(s)	85, 913, 1750, 2266
Lsp1109I	GCAGC	7 cut(s)	351, 1080, 1356, 1764, 2348, 2475, 2490
LweI	GCATC	3 cut(s)	159, 204, 2060
MabI	ACCWGGT	2 cut(s)	495, 1524
MaeI	CTAG	5 cut(s)	84, 509, 524, 1505, 1788
MaeII	ACGT	2 cut(s)	1224, 2388
MaeIII	GTNAC	8 cut(s)	59, 205, 412, 1094, 1556, 1712, 2111, 2352
MflI	RGATCY	1 cut(s)	1192
MhlI	GDGCHC	2 cut(s)	1222, 1443
MlyI	GAGTC	4 cut(s)	260, 878, 1564, 2156
MmeI	TCCRAC	3 cut(s)	1207, 2326, 2360
Mph1103I	ATGCAT	2 cut(s)	721, 1735
MslI	CAYNNNNRTG	1 cut(s)	1208
MspCI	CTTAAG	2 cut(s)	1052, 2069
MspI	CCGG	1 cut(s)	2498
MspR9I	CCNGG	3 cut(s)	497, 1526, 2498
MvaI	CCWGG	2 cut(s)	497, 1526
MvnI	CGCG	2 cut(s)	533, 808
MwoI	GCNNNNNNNGC	7 cut(s)	407, 1031, 1150, 1159, 1409, 2048, 2336
NciI	CCSGG	1 cut(s)	2498
NcoI	CCATGG	1 cut(s)	97
NdeI	CATATG	2 cut(s)	1735, 2485
NlaIII	CATG	9 cut(s)	101, 326, 470, 706, 723, 909, 1331, 2345, 2472
NlaIV	GGNNCC	1 cut(s)	2369
NmuCI	GTSAC	8 cut(s)	59, 205, 412, 1094, 1556, 1712, 2111, 2352
NsbI	TGCGCA	2 cut(s)	1481, 2219
NsiI	ATGCAT	2 cut(s)	721, 1735
NspI	RCATGY	2 cut(s)	706, 723
NspV	TTCGAA	1 cut(s)	1722
OliI	CACNNNNGTG	1 cut(s)	1208
PaeI	GCATGC	1 cut(s)	723
PagI	TCATGA	1 cut(s)	466
PaqCI	CACCTGC	1 cut(s)	2365
PciI	ACATGT	1 cut(s)	702
PfeI	GAWTC	5 cut(s)	140, 159, 1616, 2257, 2501
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	9 cut(s)	104, 219, 341, 1070, 1346, 1779, 2338, 2465, 2480
PleI	GAGTC	4 cut(s)	259, 877, 1563, 2156
PpsI	GAGTC	4 cut(s)	259, 877, 1563, 2156
PscI	ACATGT	1 cut(s)	702
PshBI	ATTAAT	1 cut(s)	1533
Psp6I	CCWGG	2 cut(s)	495, 1524
PspFI	CCCAGC	1 cut(s)	1214
PspGI	CCWGG	2 cut(s)	495, 1524
PspN4I	GGNNCC	1 cut(s)	2369
PspPI	GGNCC	4 cut(s)	121, 666, 1606, 1680
PstI	CTGCAG	1 cut(s)	2465
PstNI	CAGNNNCTG	1 cut(s)	1153
PsuI	RGATCY	1 cut(s)	1192
RsaI	GTAC	4 cut(s)	54, 501, 785, 1799
RsaNI	GTAC	4 cut(s)	53, 500, 784, 1798
RseI	CAYNNNNRTG	1 cut(s)	1208
SatI	GCNGC	9 cut(s)	103, 218, 340, 1069, 1345, 1778, 2337, 2464, 2479
Sau96I	GGNCC	4 cut(s)	121, 666, 1606, 1680
ScaI	AGTACT	3 cut(s)	54, 785, 1799
SchI	GAGTC	4 cut(s)	260, 878, 1564, 2156
ScrFI	CCNGG	3 cut(s)	497, 1526, 2498
SduI	GDGCHC	2 cut(s)	1222, 1443
SexAI	ACCWGGT	2 cut(s)	495, 1524
SfaNI	GCATC	3 cut(s)	159, 204, 2060
SfcI	CTRYAG	1 cut(s)	2461
SfuI	TTCGAA	1 cut(s)	1722
SinI	GGWCC	1 cut(s)	1606
SmiMI	CAYNNNNRTG	1 cut(s)	1208
SmlI	CTYRAG	2 cut(s)	1052, 2069
SmoI	CTYRAG	2 cut(s)	1052, 2069
SphI	GCATGC	1 cut(s)	723
SsiI	CCGC	4 cut(s)	103, 217, 264, 2264
SspMI	CTAG	5 cut(s)	84, 509, 524, 1505, 1788
StyD4I	CCNGG	3 cut(s)	495, 1524, 2496
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	6 cut(s)	877, 983, 1424, 1475, 1636, 1962
TaiI	ACGT	2 cut(s)	1227, 2391
TaqII	GACCGA	1 cut(s)	1793
TatI	WGTACW	3 cut(s)	52, 783, 1797
TauI	GCSGC	2 cut(s)	105, 220
TfiI	GAWTC	5 cut(s)	140, 159, 1616, 2257, 2501
TscAI	CASTG	6 cut(s)	44, 547, 988, 1041, 1576, 1641
TseFI	GTSAC	8 cut(s)	59, 205, 412, 1094, 1556, 1712, 2111, 2352
TseI	GCWGC	7 cut(s)	339, 1068, 1344, 1777, 2336, 2463, 2478
Tsp45I	GTSAC	8 cut(s)	59, 205, 412, 1094, 1556, 1712, 2111, 2352
TspDTI	ATGAA	9 cut(s)	132, 450, 483, 656, 1197, 1233, 1476, 1923, 2115
TspGWI	ACGGA	7 cut(s)	242, 466, 926, 1932, 2017, 2050, 2387
TspRI	CASTG	6 cut(s)	44, 547, 988, 1041, 1576, 1641
Van91I	CCANNNNNTGG	1 cut(s)	172
Vha464I	CTTAAG	2 cut(s)	1052, 2069
VpaK11BI	GGWCC	1 cut(s)	1606
VspI	ATTAAT	1 cut(s)	1533
XapI	RAATTY	3 cut(s)	711, 1725, 2225
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	2 cut(s)	706, 723
XmiI	GTMKAC	1 cut(s)	872
XspI	CTAG	5 cut(s)	84, 509, 524, 1505, 1788
ZrmI	AGTACT	3 cut(s)	54, 785, 1799
Zsp2I	ATGCAT	2 cut(s)	721, 1735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.