Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009676

Physical Location & Seq

Genomic Coordinates Reverse (-)

32505068 .. 32505857

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35032.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCTCTAATTTTGTATGCAGCCAACACATGGCTCACCACAAATTCTGATACTGATTGGAAAAGGGACATTATTCTAGAGGAAAATGTAGTTGTGGAGCTGTTGAGGGCGCTTGAAGCTGCAGAGATATTATGGGTTTGTTGGGCTGTAGATTGGGCTAGGTCTGGGCCTGATCCTAACAAGTCCCACCCCCTTGAGTTGCAGGTCATCCTCGACTGGCAAAAGAGGGAAAGCGATGCTAAATGGCGCCAGCCGATTCCTAGGTGGAGTCCTCTTCCGGCATGCCTTCCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

11.39

Weight (kDa)

4.84

Isoelectric Point (pI)

69.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02680 FvH4_4g35032 FvH4_6g12031
rosa_chinensis	RchiOBHm_Chr3g0463881
rosa_laevigata	RLG00000024739 RLG00000024742 RLG00000024745 RLG00000024748
rosa_multiflora	Rmu_co8025626.1_g000001 Rmu_co8196170.1_g000001 Rmu_sc0000517.1_g000007 Rmu_sc0004796.1_g000001 Rmu_sc0042095.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416210
rosa_rugosa	Rorug03G0068800 Rorug03G0068900
rosa_samantha	Rh3AG125800 Rh3BG129900 Rh3CG132400 Rh3DG131000 Rh3DG131100
rosa_wichuraiana	Rw3G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	30
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	116
AluBI	AGCT	2 cut(s)	100, 119
AluI	AGCT	2 cut(s)	100, 119
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	20, 119
ApoI	RAATTY	1 cut(s)	43
AspA2I	CCTAGG	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	112, 249
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	28
AvrII	CCTAGG	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	32, 106
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	77, 159, 261
BfmI	CTRYAG	2 cut(s)	120, 147
BfoI	RGCGCY	2 cut(s)	113, 250
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	21, 120
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	2 cut(s)	22, 121
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	248
BmsI	GCATC	1 cut(s)	226
BpuEI	CTTGAG	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	32, 106
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	2 cut(s)	80, 169
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	80, 169
BsnI	GGCC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	248
BspMAI	CTGCAG	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	251, 283
BstF5I	GGATG	1 cut(s)	207
BstH2I	RGCGCY	2 cut(s)	113, 250
BstHHI	GCGC	2 cut(s)	112, 249
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	285
BstSFI	CTRYAG	2 cut(s)	120, 147
BstV1I	GCAGC	2 cut(s)	32, 106
BsuRI	GGCC	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	251, 283
CfoI	GCGC	2 cut(s)	112, 249
Cfr13I	GGNCC	1 cut(s)	167
CviAII	CATG	2 cut(s)	30, 282
CviJI	RGCY	8 cut(s)	23, 34, 100, 119, 146, 158, 169, 253
CviKI_1	RGCY	8 cut(s)	23, 34, 100, 119, 146, 158, 169, 253
DinI	GGCGCC	1 cut(s)	248
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	248
EheI	GGCGCC	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	2 cut(s)	33, 285
FaiI	YATR	4 cut(s)	18, 31, 133, 283
FaqI	GGGAC	2 cut(s)	80, 169
FatI	CATG	2 cut(s)	29, 281
Fnu4HI	GCNGC	2 cut(s)	21, 120
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	21, 120
FspBI	CTAG	3 cut(s)	77, 159, 261
GlaI	GCGC	2 cut(s)	111, 248
GluI	GCNGC	2 cut(s)	21, 120
HaeII	RGCGCY	2 cut(s)	113, 250
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	2 cut(s)	112, 249
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	33, 285
Hin6I	GCGC	2 cut(s)	110, 247
HinP1I	GCGC	2 cut(s)	110, 247
HinfI	GANTC	2 cut(s)	256, 268
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	296
HpyCH4V	TGCA	3 cut(s)	20, 122, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	2 cut(s)	33, 285
HspAI	GCGC	2 cut(s)	110, 247
KasI	GGCGCC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	6 cut(s)	150, 183, 188, 202, 263, 291
Lsp1109I	GCAGC	2 cut(s)	32, 106
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	3 cut(s)	77, 159, 261
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	266
MluCI	AATT	2 cut(s)	9, 43
Mly113I	GGCGCC	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	5 cut(s)	73, 99, 219, 221, 282
MspI	CCGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	116
NarI	GGCGCC	1 cut(s)	247
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	33, 285
NlaIV	GGNNCC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	285
PaeI	GCATGC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	30
PkrI	GCNGC	2 cut(s)	22, 121
PleI	GAGTC	1 cut(s)	276
PluTI	GGCGCC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	124
SatI	GCNGC	2 cut(s)	21, 120
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	277
SetI	ASST	5 cut(s)	102, 121, 164, 207, 266
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	2 cut(s)	120, 147
SfoI	GGCGCC	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	2 cut(s)	9, 43
SspDI	GGCGCC	1 cut(s)	246
SspMI	CTAG	3 cut(s)	77, 159, 261
StyI	CCWWGG	1 cut(s)	260
TaqI	TCGA	1 cut(s)	213
TasI	AATT	2 cut(s)	9, 43
TfiI	GAWTC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	20, 119
Van91I	CCANNNNNTGG	1 cut(s)	30
XapI	RAATTY	1 cut(s)	43
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	285
XmaJI	CCTAGG	1 cut(s)	260
XspI	CTAG	3 cut(s)	77, 159, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.