RLG00000024739

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
38651374 .. 38652711
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024739

Sequence Viewer

Length: 1338 bp
ATGAGTCTGGAGACCAATTGTCTTCCAATACATATTAAGTCCGATGATGACAGTGAGGGTGCAAGCAATTATGAGAGGACAAAGAGGCGTAAGGTAGAGGCTGATCAAGGGGGCATAGATCATCATGAGATCAAGGATGCTTCTGCTTCTTGTTTGTGTGATTATTGTGCCAATTTTGCTGACAGATTCGGTTTCCTACATGAGGGAATCTTCAACACACTAAGTGATGAATACATTGAACGTTTACGCAGGCTCAACACTGACAAATTGCTTCGCCAGAGAAAACTCCACCTTGTACTTAATCTAGATCACATCTTTCTGACTTACACAAATCTCAGTGATCTGACCCCAGAAGAAGAAGAATTTTTGGAGACTCTAGCAGATTCGCAGGAAGTTCACAAAGTGCAAATTCCTCCCAAAATGAAACCTATGATTATCAAGTTCAGGCCCTCTCTGAGAAACTTTCTGAAAGAGGCCAGTGGCTTATTCGAAATTTATGCATACACAAATGCTCCTCGACCTCTTGTGTGGAAAATTGTTGAGCTACTGGATCCCAGAAATGAGTACTTTGGTCGTAGAGTAATAACGCCTGACTACCTTTGCAGCACCCACGAAGGAAAGAAGTGTCTTAATCCTGTGCTTGGCCAAGAGTCTGCTGTTTTGGTGGTTGATGACAATCTTTGCGGATGGAAGAGGGAAAATCGAAAAAATGTACAGGTAGTTTCAAAGTATAGTTTCTTCAAAAAAAGGAGTGGCCAGAAGAGAAAAAGAAAGTCTCTTTGTGAGTTGAAATCTGATGAAGGGACTGAATGTCTTGTAGTTCTTCTTAGAAATCTTAAACGAATACACAGCAGGTTCTTTGTTGATGAAGTAATGTTCAACAGAGATGTGAGGATGCTGTTAAAAATTGATTGGGACCCTATTTATGAAGATGGTAGGCTTAAGTTGTGGAAGAGGACATTGTCAAACTGTATGCAGAAAAAAGTTATGGCGTCACTTAGGCAACAGAAGAAGATAGCAGGGCAGTCCTCCGGAACTACTTATGTTAAAGAACAACTAGATAATCCATCATCGTCAGAGGTTGCAGGAGCAGCTCACGTCGAAAGGTCACAGGCTCGTTGGATCCATCCGAGTTGGATTGACATATCAATCCGTTTATGGCAAAAGAGTCATGCAGGCAAGTTTCCTCTTATCCTCAAGGATAGCGAATTTACCTGCAGCTCATGTGGTTGCAGCTCATTTTGGAACACGGGAATCTCCTTGGGCAGTGAAAGGAAACAACATATGTGCCCATCCGAAGAAGCATCAATTGATCCCTTTGTGGAAAGAGAGTCCTGA

Protein Analysis

446

Amino Acids

51.5

Weight (kDa)

8.62

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 97 - 244 1.6e-14 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 843, 1223
AccIII TCCGGA 1 cut(s) 1031
AciI CCGC 1 cut(s) 684
AclI AACGTT 1 cut(s) 241
AclWI GGATC 5 cut(s) 545, 558, 1117, 1130, 1307
AcoI YGGCCR 2 cut(s) 643, 754
AcsI RAATTY 4 cut(s) 362, 408, 492, 1208
AcyI GRCGYC 1 cut(s) 992
AdeI CACNNNGTG 2 cut(s) 224, 403
AfaI GTAC 3 cut(s) 297, 566, 714
AfiI CCNNNNNNNGG 2 cut(s) 202, 641
AflII CTTAAG 1 cut(s) 941
AgsI TTSAA 6 cut(s) 214, 239, 726, 742, 790, 880
AhdI GACNNNNNGTC 2 cut(s) 18, 810
AjiI CACGTC 1 cut(s) 1099
AluBI AGCT 4 cut(s) 544, 1094, 1221, 1236
AluI AGCT 4 cut(s) 544, 1094, 1221, 1236
Alw26I GTCTC 3 cut(s) 5, 365, 780
AlwI GGATC 5 cut(s) 545, 558, 1117, 1130, 1307
Aor13HI TCCGGA 1 cut(s) 1031
AoxI GGCC 4 cut(s) 446, 474, 643, 754
ApeKI GCWGC 4 cut(s) 603, 1091, 1218, 1233
ApoI RAATTY 4 cut(s) 362, 408, 492, 1208
AspS9I GGNCC 2 cut(s) 447, 916
AsuII TTCGAA 1 cut(s) 489
AvaII GGWCC 1 cut(s) 916
BaeGI GKGCMC 1 cut(s) 1292
BalI TGGCCA 2 cut(s) 645, 756
BamHI GGATCC 2 cut(s) 550, 1122
BarI GAAGNNNNNNTAC 2 cut(s) 722, 754
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 4 cut(s) 615, 1103, 1230, 1245
BccI CCATC 5 cut(s) 681, 926, 1075, 1134, 1300
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 3 cut(s) 5, 365, 780
BfaI CTAG 3 cut(s) 305, 377, 1058
BfmI CTRYAG 1 cut(s) 1216
BfrI CTTAAG 1 cut(s) 941
BfuAI ACCTGC 2 cut(s) 843, 1223
BisI GCNGC 4 cut(s) 604, 1092, 1219, 1234
BlsI GCNGC 4 cut(s) 605, 1093, 1220, 1235
BmcAI AGTACT 1 cut(s) 566
Bme18I GGWCC 1 cut(s) 916
BmeRI GACNNNNNGTC 2 cut(s) 18, 810
BmgBI CACGTC 1 cut(s) 1099
BmgT120I GGNCC 2 cut(s) 447, 916
BmiI GGNNCC 4 cut(s) 552, 917, 918, 1124
BmsI GCATC 3 cut(s) 127, 885, 1313
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 1181
BsaBI GATNNNNATC 1 cut(s) 675
BsaHI GRCGYC 1 cut(s) 992
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 1260
BsaWI WCCGGW 1 cut(s) 1031
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 641
Bse1I ACTGG 2 cut(s) 477, 552
Bse8I GATNNNNATC 1 cut(s) 675
BseAI TCCGGA 1 cut(s) 1031
BseDI CCNNGG 1 cut(s) 1260
BseGI GGATG 5 cut(s) 142, 692, 900, 1126, 1292
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 2 cut(s) 202, 641
BseMII CTCAG 2 cut(s) 349, 446
BseNI ACTGG 2 cut(s) 477, 552
BseRI GAGGAG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 1292
BseXI GCAGC 4 cut(s) 615, 1103, 1230, 1245
BshFI GGCC 4 cut(s) 448, 476, 645, 756
BsiSI CCGG 1 cut(s) 1032
BslFI GGGAC 2 cut(s) 817, 929
BslI CCNNNNNNNGG 2 cut(s) 202, 641
BsmAI GTCTC 3 cut(s) 5, 365, 780
BsmFI GGGAC 2 cut(s) 817, 929
BsnI GGCC 4 cut(s) 448, 476, 645, 756
Bso31I GGTCTC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 1292
Bsp13I TCCGGA 1 cut(s) 1031
Bsp1407I TGTACA 1 cut(s) 712
Bsp143I GATC 8 cut(s) 103, 118, 129, 307, 340, 550, 1122, 1312
BspACI CCGC 1 cut(s) 684
BspANI GGCC 4 cut(s) 448, 476, 645, 756
BspCNI CTCAG 2 cut(s) 348, 447
BspEI TCCGGA 1 cut(s) 1031
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 4 cut(s) 552, 917, 918, 1124
BspMAI CTGCAG 1 cut(s) 1220
BspMI ACCTGC 2 cut(s) 843, 1223
BspPI GGATC 5 cut(s) 545, 558, 1117, 1130, 1307
BspT104I TTCGAA 1 cut(s) 489
BspTI CTTAAG 1 cut(s) 941
BspTNI GGTCTC 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 712
BsrI ACTGG 2 cut(s) 477, 552
BssECI CCNNGG 1 cut(s) 1260
BssMI GATC 8 cut(s) 103, 118, 129, 307, 340, 550, 1122, 1312
BssNI GRCGYC 1 cut(s) 992
BssT1I CCWWGG 1 cut(s) 1260
Bst4CI ACNGT 2 cut(s) 53, 971
Bst6I CTCTTC 3 cut(s) 686, 755, 947
BstACI GRCGYC 1 cut(s) 992
BstAFI CTTAAG 1 cut(s) 941
BstAUI TGTACA 1 cut(s) 712
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 3 cut(s) 64, 251, 1177
BstDEI CTNAG 5 cut(s) 221, 335, 455, 827, 998
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 5 cut(s) 142, 692, 900, 1126, 1292
BstKTI GATC 8 cut(s) 106, 121, 132, 310, 343, 553, 1125, 1315
BstMAI GTCTC 3 cut(s) 5, 365, 780
BstMBI GATC 8 cut(s) 103, 118, 129, 307, 340, 550, 1122, 1312
BstMWI GCNNNNNNNGC 2 cut(s) 176, 1091
BstSFI CTRYAG 1 cut(s) 1216
BstSLI GKGCMC 1 cut(s) 1292
BstV1I GCAGC 4 cut(s) 615, 1103, 1230, 1245
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 550, 1122
BstYI RGATCY 2 cut(s) 550, 1122
BsuRI GGCC 4 cut(s) 448, 476, 645, 756
BtrI CACGTC 1 cut(s) 1099
BtsCI GGATG 5 cut(s) 142, 692, 900, 1126, 1292
BtsI GCAGTG 1 cut(s) 1273
BtsIMutI CAGTG 5 cut(s) 58, 258, 343, 484, 1273
BveI ACCTGC 2 cut(s) 843, 1223
Cac8I GCNNGC 3 cut(s) 64, 251, 1177
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 447, 916
CseI GACGC 1 cut(s) 981
Csp6I GTAC 3 cut(s) 296, 565, 713
CviAII CATG 4 cut(s) 125, 200, 1172, 1224
CviQI GTAC 3 cut(s) 296, 565, 713
DdeI CTNAG 5 cut(s) 221, 335, 455, 827, 998
DpnI GATC 8 cut(s) 105, 120, 131, 309, 342, 552, 1124, 1314
DpnII GATC 8 cut(s) 103, 118, 129, 307, 340, 550, 1122, 1312
DraIII CACNNNGTG 2 cut(s) 224, 403
DriI GACNNNNNGTC 2 cut(s) 18, 810
EaeI YGGCCR 2 cut(s) 643, 754
Eam1104I CTCTTC 3 cut(s) 686, 755, 947
Eam1105I GACNNNNNGTC 2 cut(s) 18, 810
EarI CTCTTC 3 cut(s) 686, 755, 947
Eco130I CCWWGG 1 cut(s) 1260
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 916
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoO109I RGGNCCY 2 cut(s) 447, 916
EcoT14I CCWWGG 1 cut(s) 1260
EcoT22I ATGCAT 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 1260
FaeI CATG 4 cut(s) 128, 203, 1175, 1227
FaqI GGGAC 2 cut(s) 817, 929
FatI CATG 4 cut(s) 124, 199, 1171, 1223
FauNDI CATATG 1 cut(s) 1284
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 4 cut(s) 604, 1092, 1219, 1234
FokI GGATG 5 cut(s) 149, 699, 907, 1113, 1279
Fsp4HI GCNGC 4 cut(s) 604, 1092, 1219, 1234
FspBI CTAG 3 cut(s) 305, 377, 1058
GluI GCNGC 4 cut(s) 604, 1092, 1219, 1234
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 4 cut(s) 448, 476, 645, 756
HapII CCGG 1 cut(s) 1032
HgaI GACGC 1 cut(s) 981
Hin1I GRCGYC 1 cut(s) 992
Hin1II CATG 4 cut(s) 128, 203, 1175, 1227
HinfI GANTC 9 cut(s) 4, 186, 207, 373, 383, 650, 1168, 1254, 1331
HpaII CCGG 1 cut(s) 1032
Hpy166II GTNNAC 2 cut(s) 245, 397
Hpy188I TCNGA 9 cut(s) 43, 321, 345, 456, 468, 796, 1078, 1131, 1297
Hpy188III TCNNGA 5 cut(s) 8, 125, 305, 1032, 1335
Hpy8I GTNNAC 2 cut(s) 245, 397
Hpy99I CGWCG 1 cut(s) 1103
HpyAV CCTTC 2 cut(s) 608, 794
HpyCH4III ACNGT 2 cut(s) 53, 971
HpyCH4IV ACGT 2 cut(s) 241, 1098
HpyCH4V TGCA 9 cut(s) 62, 406, 500, 603, 976, 1085, 1175, 1218, 1233
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 1091
HpyF3I CTNAG 5 cut(s) 221, 335, 455, 827, 998
HpySE526I ACGT 2 cut(s) 241, 1098
Hsp92I GRCGYC 1 cut(s) 992
Hsp92II CATG 4 cut(s) 128, 203, 1175, 1227
KflI GGGWCCC 1 cut(s) 916
Kpn2I TCCGGA 1 cut(s) 1031
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 8 cut(s) 103, 118, 129, 307, 340, 550, 1122, 1312
LmnI GCTCC 2 cut(s) 517, 1088
Lsp1109I GCAGC 4 cut(s) 615, 1103, 1230, 1245
LweI GCATC 3 cut(s) 127, 885, 1313
MaeI CTAG 3 cut(s) 305, 377, 1058
MaeII ACGT 2 cut(s) 241, 1098
MaeIII GTNAC 2 cut(s) 993, 1107
MalI GATC 8 cut(s) 105, 120, 131, 309, 342, 552, 1124, 1314
MboI GATC 8 cut(s) 103, 118, 129, 307, 340, 550, 1122, 1312
MfeI CAATTG 2 cut(s) 16, 1308
MflI RGATCY 2 cut(s) 550, 1122
MhlI GDGCHC 1 cut(s) 1292
MlsI TGGCCA 2 cut(s) 645, 756
MluNI TGGCCA 2 cut(s) 645, 756
MlyI GAGTC 4 cut(s) 13, 367, 659, 1177
MmeI TCCRAC 2 cut(s) 1100, 1115
Mox20I TGGCCA 2 cut(s) 645, 756
Mph1103I ATGCAT 1 cut(s) 502
MroI TCCGGA 1 cut(s) 1031
MscI TGGCCA 2 cut(s) 645, 756
MseI TTAA 7 cut(s) 36, 300, 630, 837, 902, 942, 1047
Msp20I TGGCCA 2 cut(s) 645, 756
MspCI CTTAAG 1 cut(s) 941
MspI CCGG 1 cut(s) 1032
MunI CAATTG 2 cut(s) 16, 1308
MwoI GCNNNNNNNGC 2 cut(s) 176, 1091
NdeI CATATG 1 cut(s) 1284
NdeII GATC 8 cut(s) 103, 118, 129, 307, 340, 550, 1122, 1312
NlaIII CATG 4 cut(s) 128, 203, 1175, 1227
NlaIV GGNNCC 4 cut(s) 552, 917, 918, 1124
NmuCI GTSAC 2 cut(s) 993, 1107
NsiI ATGCAT 1 cut(s) 502
NspV TTCGAA 1 cut(s) 489
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 4 cut(s) 186, 207, 383, 1254
PflFI GACNNNGTC 1 cut(s) 961
PkrI GCNGC 4 cut(s) 605, 1093, 1220, 1235
PleI GAGTC 4 cut(s) 12, 367, 658, 1176
PpsI GAGTC 4 cut(s) 12, 367, 658, 1176
PpuMI RGGWCCY 1 cut(s) 916
Psp1406I AACGTT 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 916
PspN4I GGNNCC 4 cut(s) 552, 917, 918, 1124
PspPI GGNCC 2 cut(s) 447, 916
PspPPI RGGWCCY 1 cut(s) 916
PstI CTGCAG 1 cut(s) 1220
PsuI RGATCY 2 cut(s) 550, 1122
PsyI GACNNNGTC 1 cut(s) 961
RsaI GTAC 3 cut(s) 297, 566, 714
RsaNI GTAC 3 cut(s) 296, 565, 713
SaqAI TTAA 7 cut(s) 36, 300, 630, 837, 902, 942, 1047
SatI GCNGC 4 cut(s) 604, 1092, 1219, 1234
Sau3AI GATC 8 cut(s) 103, 118, 129, 307, 340, 550, 1122, 1312
Sau96I GGNCC 2 cut(s) 447, 916
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 4 cut(s) 13, 367, 659, 1177
SduI GDGCHC 1 cut(s) 1292
SfaNI GCATC 3 cut(s) 127, 885, 1313
SfcI CTRYAG 1 cut(s) 1216
SfuI TTCGAA 1 cut(s) 489
SinI GGWCC 1 cut(s) 916
SmlI CTYRAG 2 cut(s) 941, 1196
SmoI CTYRAG 2 cut(s) 941, 1196
SsiI CCGC 1 cut(s) 684
SspMI CTAG 3 cut(s) 305, 377, 1058
StyI CCWWGG 1 cut(s) 1260
TaaI ACNGT 2 cut(s) 53, 971
TaiI ACGT 2 cut(s) 244, 1101
TaqI TCGA 4 cut(s) 489, 517, 703, 1101
TatI WGTACW 3 cut(s) 295, 564, 712
TfiI GAWTC 4 cut(s) 186, 207, 383, 1254
Tru1I TTAA 7 cut(s) 36, 300, 630, 837, 902, 942, 1047
Tru9I TTAA 7 cut(s) 36, 300, 630, 837, 902, 942, 1047
TscAI CASTG 5 cut(s) 58, 265, 343, 484, 1273
TseFI GTSAC 2 cut(s) 993, 1107
TseI GCWGC 4 cut(s) 603, 1091, 1218, 1233
Tsp45I GTSAC 2 cut(s) 993, 1107
TspDTI ATGAA 5 cut(s) 243, 437, 813, 882, 942
TspGWI ACGGA 1 cut(s) 1142
TspRI CASTG 5 cut(s) 58, 265, 343, 484, 1273
Tth111I GACNNNGTC 1 cut(s) 961
Vha464I CTTAAG 1 cut(s) 941
VpaK11BI GGWCC 1 cut(s) 916
XagI CCTNNNNNAGG 1 cut(s) 200
XapI RAATTY 4 cut(s) 362, 408, 492, 1208
XbaI TCTAGA 1 cut(s) 304
XspI CTAG 3 cut(s) 305, 377, 1058
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.