Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042095.1

Orthogroup ID

OG0009676

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 691

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042095.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 644 bp

atcctacaaatgagtactttggtcgtagagtgatatcgcgtgaggatttcgttagcacctttgcaggaaagaagtgtcttgatcttgtgcttgcccaagagtctactgttctgatccttgatcataagcaagagacatggacggagcaaaatcaaaataatattgtactaacgcaaaagtatcagttctttaaaggaaggggtgaacagaacagtgagttccagtcccattgtgagttgaaaactgatgagggggcatatcttgcagtgatccttcaacatcttaagctaattcacagcagcttctttgatgatcaagtgatgtgtgacaaccttattgaaagagatgtgaggaaggtgttgaaaaatcttcggcaacagaagctggcagagcagttgggaactacttgtgatgaacaaatggatctatcgaccacacaggtggctggggctcacgttggactgcctgctcgttcattgcaaatggattttcctgctcgctcacaggaggttgcaagtaattatgagatggcaaaaaggcgtaacttaacgattgatcatgggggaacaacaagcagcacagatcatgaggagatcgggatacggttttctacacgaggggcttttaaccaccctaagtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

213

Amino Acids

24.3

Weight (kDa)

6.08

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02680 FvH4_4g35032 FvH4_6g12031
rosa_chinensis	RchiOBHm_Chr3g0463881
rosa_laevigata	RLG00000024739 RLG00000024742 RLG00000024745 RLG00000024748
rosa_multiflora	Rmu_co8025626.1_g000001 Rmu_co8196170.1_g000001 Rmu_sc0000517.1_g000007 Rmu_sc0004796.1_g000001 Rmu_sc0042095.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416210
rosa_rugosa	Rorug03G0068800 Rorug03G0068900
rosa_samantha	Rh3AG125800 Rh3BG129900 Rh3CG132400 Rh3DG131000 Rh3DG131100
rosa_wichuraiana	Rw3G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	103
AccII	CGCG	1 cut(s)	39
AclWI	GGATC	3 cut(s)	108, 264, 431
AfaI	GTAC	2 cut(s)	16, 167
AflII	CTTAAG	1 cut(s)	283
AgsI	TTSAA	4 cut(s)	240, 277, 340, 363
AleI	CACNNNNGTG	1 cut(s)	439
AluBI	AGCT	3 cut(s)	288, 302, 384
AluI	AGCT	3 cut(s)	288, 302, 384
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	3 cut(s)	108, 264, 431
AlwNI	CAGNNNCTG	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	299, 575
AsuHPI	GGTGA	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	311, 587
BccI	CCATC	1 cut(s)	522
BciVI	GTATCC	1 cut(s)	593
BclI	TGATCA	3 cut(s)	120, 312, 555
BcoDI	GTCTC	1 cut(s)	127
BfrI	CTTAAG	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	593
BisI	GCNGC	2 cut(s)	300, 576
BlsI	GCNGC	2 cut(s)	301, 577
BmcAI	AGTACT	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	475
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	604
BseXI	GCAGC	2 cut(s)	311, 587
BseYI	CCCAGC	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	9 cut(s)	81, 113, 120, 269, 312, 423, 555, 582, 593
BspFNI	CGCG	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	585
BspPI	GGATC	3 cut(s)	108, 264, 431
BspTI	CTTAAG	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	222
BssMI	GATC	9 cut(s)	81, 113, 120, 269, 312, 423, 555, 582, 593
BssSI	CACGAG	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	614
Bst4CI	ACNGT	3 cut(s)	108, 214, 605
BstAFI	CTTAAG	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstC8I	GCNNGC	4 cut(s)	92, 386, 467, 498
BstDEI	CTNAG	1 cut(s)	635
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	9 cut(s)	84, 116, 123, 272, 315, 426, 558, 585, 596
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	9 cut(s)	81, 113, 120, 269, 312, 423, 555, 582, 593
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 381, 390
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	311, 587
BstX2I	RGATCY	1 cut(s)	423
BstXI	CCANNNNNNTGG	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	593
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	2 cut(s)	219, 272
Cac8I	GCNNGC	4 cut(s)	92, 386, 467, 498
CaiI	CAGNNNCTG	1 cut(s)	384
CciI	TCATGA	1 cut(s)	585
Csp6I	GTAC	2 cut(s)	15, 166
CviAII	CATG	3 cut(s)	137, 559, 586
CviJI	RGCY	6 cut(s)	288, 302, 384, 445, 451, 622
CviKI_1	RGCY	6 cut(s)	288, 302, 384, 445, 451, 622
CviQI	GTAC	2 cut(s)	15, 166
DdeI	CTNAG	1 cut(s)	635
DpnI	GATC	9 cut(s)	83, 115, 122, 271, 314, 425, 557, 584, 595
DpnII	GATC	9 cut(s)	81, 113, 120, 269, 312, 423, 555, 582, 593
DraI	TTTAAA	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	453
Eco32I	GATATC	1 cut(s)	35
EcoRV	GATATC	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	453
FaeI	CATG	3 cut(s)	140, 562, 589
FaiI	YATR	6 cut(s)	125, 138, 258, 524, 560, 587
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	3 cut(s)	136, 558, 585
FbaI	TGATCA	3 cut(s)	120, 312, 555
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	300, 576
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	300, 576
GluI	GCNGC	2 cut(s)	300, 576
GsaI	CCCAGC	1 cut(s)	449
Hin1II	CATG	3 cut(s)	140, 562, 589
HinfI	GANTC	1 cut(s)	100
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	104, 205
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	3 cut(s)	79, 586, 597
Hpy8I	GTNNAC	2 cut(s)	104, 205
HpyAV	CCTTC	3 cut(s)	191, 283, 348
HpyCH4III	ACNGT	3 cut(s)	108, 214, 605
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	4 cut(s)	64, 265, 480, 514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 381, 390
HpyF3I	CTNAG	1 cut(s)	635
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	3 cut(s)	140, 562, 589
Ksp22I	TGATCA	3 cut(s)	120, 312, 555
Kzo9I	GATC	9 cut(s)	81, 113, 120, 269, 312, 423, 555, 582, 593
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	8 cut(s)	50, 235, 370, 424, 431, 479, 490, 506
Lsp1109I	GCAGC	2 cut(s)	311, 587
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	2 cut(s)	325, 541
MalI	GATC	9 cut(s)	83, 115, 122, 271, 314, 425, 557, 584, 595
MboI	GATC	9 cut(s)	81, 113, 120, 269, 312, 423, 555, 582, 593
MboII	GAAGA	1 cut(s)	361
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	2 cut(s)	290, 519
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	6 cut(s)	36, 243, 344, 501, 582, 610
MseI	TTAA	4 cut(s)	191, 284, 547, 626
MslI	CAYNNNNRTG	1 cut(s)	439
MspCI	CTTAAG	1 cut(s)	283
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	262, 381, 390
NdeII	GATC	9 cut(s)	81, 113, 120, 269, 312, 423, 555, 582, 593
NlaIII	CATG	3 cut(s)	140, 562, 589
NmuCI	GTSAC	1 cut(s)	325
OliI	CACNNNNGTG	1 cut(s)	439
PagI	TCATGA	1 cut(s)	585
PkrI	GCNGC	2 cut(s)	301, 577
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	2 cut(s)	16, 167
RsaNI	GTAC	2 cut(s)	15, 166
RseI	CAYNNNNRTG	1 cut(s)	439
SaqAI	TTAA	4 cut(s)	191, 284, 547, 626
SatI	GCNGC	2 cut(s)	300, 576
Sau3AI	GATC	9 cut(s)	81, 113, 120, 269, 312, 423, 555, 582, 593
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	9 cut(s)	61, 290, 304, 335, 359, 386, 443, 458, 512
SmiMI	CAYNNNNRTG	1 cut(s)	439
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	2 cut(s)	290, 519
SspI	AATATT	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	108, 214, 605
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	1 cut(s)	430
TasI	AATT	2 cut(s)	290, 519
TatI	WGTACW	2 cut(s)	14, 165
Tru1I	TTAA	4 cut(s)	191, 284, 547, 626
Tru9I	TTAA	4 cut(s)	191, 284, 547, 626
TscAI	CASTG	2 cut(s)	219, 272
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	299, 575
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	428, 464
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	2 cut(s)	219, 272
Vha464I	CTTAAG	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	103
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.