Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009676

Physical Location & Seq

Genomic Coordinates Reverse (-)

7254048 .. 7256296

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12031.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGTTGTGGAGAACAAAGGGCAGGTGGCGGGGTGAGGGGGAGTGTGAGGAGGGGTGGGTAGCACAGTGGAAGACCCATGGGTGGCTGGGGTTGGAGGAACATACCCAAAACGAATCATGGGGCTTGCACGATGGTGCTCTGGAGGGCTGCAATTTGAGCCGTGATATGGTTCTGGAAGGAGGTGTTGTCGTTCTCGAGAGCAGAGTGTATCTCCTCGACCTGATGTTGGGTGACCTCATGGGGTTGGTAGGAAGAGGAACTGAGTTGTTGATGGTGGGGTGGGATGGGAGGGACTGTGGAGGGGAGGACGAGGGAGCAGAAATCTGTATATTTCGAGCCGGAGCCATGCTGGCTCTGATACCAGATATTGAGGTAGTTGTGGAGCCGTTGACGGCCCTTGAAGATCCAGAGATATTCTGGGATTGTTGGGCTATAGATTGGGCTAGGTCTGGGCCTGATCCTAACAGTTGTTACAAATCGATTGATGATGACGAAGATGTGTTTCGAGACCGATTATCACCAATACATATTGAGTCTGATGATGGCTGTGAGGGGCTCTTAGCCACCTTGAGTGTTGAACACATCCACCGTTTACACAAGCACAACACTGAGAAATTGCTCCTCCGTAGAAAACTCGTCCTGAATGGCAATAAGAGAAAATGCAAGTCCCTATGTGAGTTGAAATATGATGAACCGGCTGATTATGTTGCATCTTTGCTTAAACATCTTAAGCGAATTCACAACAGGTTCTTTAATGATGAAGTAATGTGCGACAACCTTTTCGACAGAAATGTGGGGATGTTGTTGAAAATTGAGTGGGACTCTAAAAGTAAGAACAGTAAGCTTCAGCTGTGGAGGAAGGCATTAGCAATTATGAAGATGGCAGAGAAGTTGTCGCAAGCTCTTTGTGTTGAAGAACAAGTGGATGATCCATTGGAGGTTGCAGAAGCAGCTCATGTTAGAAAGTCACCTGCTCGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

37.39

Weight (kDa)

5.09

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02680 FvH4_4g35032 FvH4_6g12031
rosa_chinensis	RchiOBHm_Chr3g0463881
rosa_laevigata	RLG00000024739 RLG00000024742 RLG00000024745 RLG00000024748
rosa_multiflora	Rmu_co8025626.1_g000001 Rmu_co8196170.1_g000001 Rmu_sc0000517.1_g000007 Rmu_sc0004796.1_g000001 Rmu_sc0042095.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416210
rosa_rugosa	Rorug03G0068800 Rorug03G0068900
rosa_samantha	Rh3AG125800 Rh3BG129900 Rh3CG132400 Rh3DG131000 Rh3DG131100
rosa_wichuraiana	Rw3G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	15, 982
Acc36I	ACCTGC	2 cut(s)	15, 982
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	3 cut(s)	401, 455, 926
AcsI	RAATTY	1 cut(s)	738
AcuI	CTGAAG	1 cut(s)	833
AfiI	CCNNNNNNNGG	3 cut(s)	84, 169, 229
AflII	CTTAAG	1 cut(s)	731
AgsI	TTSAA	5 cut(s)	404, 581, 685, 811, 917
AleI	CACNNNNGTG	1 cut(s)	135
AluBI	AGCT	4 cut(s)	847, 853, 905, 956
AluI	AGCT	4 cut(s)	847, 853, 905, 956
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	504
AlwI	GGATC	3 cut(s)	401, 455, 926
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	396, 455
ApeKI	GCWGC	2 cut(s)	150, 953
ApoI	RAATTY	1 cut(s)	738
ArsI	GACNNNNNNTTYG	2 cut(s)	767, 799
AspS9I	GGNCC	2 cut(s)	397, 455
AsuHPI	GGTGA	4 cut(s)	47, 245, 513, 963
AvaI	CYCGRG	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	561
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	137, 965
BccI	CCATC	5 cut(s)	128, 268, 281, 539, 877
BceAI	ACGGC	3 cut(s)	147, 373, 411
BcoDI	GTCTC	1 cut(s)	504
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	731
BfuAI	ACCTGC	2 cut(s)	15, 982
BglI	GCCNNNNNGGC	1 cut(s)	353
BisI	GCNGC	2 cut(s)	151, 954
BlsI	GCNGC	2 cut(s)	152, 955
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	397, 455
BmiI	GGNNCC	2 cut(s)	346, 387
BmsI	GCATC	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	4 cut(s)	198, 230, 809, 841
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	592
Bsa29I	ATCGAT	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	79
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 204, 283, 313
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 169, 229
Bse118I	RCCGGY	1 cut(s)	697
BseCI	ATCGAT	1 cut(s)	482
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	4 cut(s)	292, 585, 807, 934
BseLI	CCNNNNNNNGG	3 cut(s)	84, 169, 229
BseMII	CTCAG	2 cut(s)	255, 603
BseRI	GAGGAG	3 cut(s)	65, 206, 614
BseXI	GCAGC	2 cut(s)	137, 965
BseYI	CCCAGC	1 cut(s)	88
BshFI	GGCC	2 cut(s)	398, 457
BshVI	ATCGAT	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	342, 698
BslFI	GGGAC	3 cut(s)	308, 655, 836
BslI	CCNNNNNNNGG	3 cut(s)	84, 169, 229
BsmAI	GTCTC	1 cut(s)	504
BsmFI	GGGAC	3 cut(s)	308, 655, 836
BsnI	GGCC	2 cut(s)	398, 457
Bso31I	GGTCTC	1 cut(s)	504
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	142, 561
Bsp143I	GATC	3 cut(s)	406, 460, 931
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	2 cut(s)	398, 457
BspCNI	CTCAG	2 cut(s)	256, 604
BspDI	ATCGAT	1 cut(s)	482
BspLI	GGNNCC	2 cut(s)	346, 387
BspMI	ACCTGC	2 cut(s)	15, 982
BspPI	GGATC	3 cut(s)	401, 455, 926
BspTI	CTTAAG	1 cut(s)	731
BspTNI	GGTCTC	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	697
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	3 cut(s)	406, 460, 931
BssT1I	CCWWGG	1 cut(s)	79
Bst4CI	ACNGT	5 cut(s)	69, 299, 470, 593, 842
Bst6I	CTCTTC	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	731
BstC8I	GCNNGC	3 cut(s)	128, 354, 903
BstDEI	CTNAG	3 cut(s)	264, 562, 612
BstDSI	CCRYGG	1 cut(s)	79
BstEII	GGTNACC	1 cut(s)	233
BstF5I	GGATG	4 cut(s)	292, 585, 807, 934
BstKTI	GATC	3 cut(s)	409, 463, 934
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	3 cut(s)	406, 460, 931
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 353, 953
BstPI	GGTNACC	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	137, 965
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	398, 457
BsuTUI	ATCGAT	1 cut(s)	482
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	4 cut(s)	292, 585, 807, 934
BtsIMutI	CAGTG	2 cut(s)	74, 609
BveI	ACCTGC	2 cut(s)	15, 982
Cac8I	GCNNGC	3 cut(s)	128, 354, 903
Cfr10I	RCCGGY	1 cut(s)	697
Cfr13I	GGNCC	2 cut(s)	397, 455
ClaI	ATCGAT	1 cut(s)	482
CviAII	CATG	5 cut(s)	80, 120, 241, 349, 959
DdeI	CTNAG	3 cut(s)	264, 562, 612
DpnI	GATC	3 cut(s)	408, 462, 933
DpnII	GATC	3 cut(s)	406, 460, 931
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	561
Eco31I	GGTCTC	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	833
Eco88I	CYCGRG	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	738
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	5 cut(s)	83, 123, 244, 352, 962
FaqI	GGGAC	3 cut(s)	308, 655, 836
FatI	CATG	5 cut(s)	79, 119, 240, 348, 958
FauI	CCCGC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	151, 954
FokI	GGATG	4 cut(s)	299, 572, 814, 941
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	2 cut(s)	151, 954
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	2 cut(s)	151, 954
GsaI	CCCAGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	398, 457
HapII	CCGG	2 cut(s)	342, 698
Hin1II	CATG	5 cut(s)	83, 123, 244, 352, 962
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	3 cut(s)	116, 536, 824
HpaII	CCGG	2 cut(s)	342, 698
HphI	GGTGA	4 cut(s)	47, 245, 513, 963
Hpy166II	GTNNAC	2 cut(s)	393, 596
Hpy188I	TCNGA	2 cut(s)	360, 541
Hpy188III	TCNNGA	7 cut(s)	143, 176, 197, 199, 410, 509, 643
Hpy8I	GTNNAC	2 cut(s)	393, 596
HpyAV	CCTTC	2 cut(s)	173, 856
HpyCH4III	ACNGT	5 cut(s)	69, 299, 470, 593, 842
HpyCH4V	TGCA	5 cut(s)	130, 153, 666, 713, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 353, 953
HpyF3I	CTNAG	3 cut(s)	264, 562, 612
Hsp92II	CATG	5 cut(s)	83, 123, 244, 352, 962
Kzo9I	GATC	3 cut(s)	406, 460, 931
LmnI	GCTCC	4 cut(s)	317, 344, 385, 627
Lsp1109I	GCAGC	2 cut(s)	137, 965
LweI	GCATC	1 cut(s)	722
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	233, 473, 969
MalI	GATC	3 cut(s)	408, 462, 933
MboI	GATC	3 cut(s)	406, 460, 931
MboII	GAAGA	6 cut(s)	85, 267, 416, 509, 892, 929
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	142, 561
MluCI	AATT	5 cut(s)	154, 617, 738, 813, 873
MlyI	GAGTC	2 cut(s)	545, 818
MmeI	TCCRAC	1 cut(s)	75
MseI	TTAA	3 cut(s)	723, 732, 756
MslI	CAYNNNNRTG	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	853
MspCI	CTTAAG	1 cut(s)	731
MspI	CCGG	2 cut(s)	342, 698
MwoI	GCNNNNNNNGC	3 cut(s)	159, 353, 953
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	3 cut(s)	406, 460, 931
NlaIII	CATG	5 cut(s)	83, 123, 244, 352, 962
NlaIV	GGNNCC	2 cut(s)	346, 387
NmuCI	GTSAC	2 cut(s)	233, 969
OliI	CACNNNNGTG	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	197
PaqCI	CACCTGC	2 cut(s)	15, 982
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	152, 955
PleI	GAGTC	2 cut(s)	544, 818
PpsI	GAGTC	2 cut(s)	544, 818
PspEI	GGTNACC	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	346, 387
PspPI	GGNCC	2 cut(s)	397, 455
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	853
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	3 cut(s)	723, 732, 756
SatI	GCNGC	2 cut(s)	151, 954
Sau3AI	GATC	3 cut(s)	406, 460, 931
Sau96I	GGNCC	2 cut(s)	397, 455
SchI	GAGTC	2 cut(s)	545, 818
SduI	GDGCHC	2 cut(s)	142, 561
SfaNI	GCATC	1 cut(s)	722
SfcI	CTRYAG	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	3 cut(s)	197, 571, 731
SmoI	CTYRAG	3 cut(s)	197, 571, 731
Sse9I	AATT	5 cut(s)	154, 617, 738, 813, 873
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	5 cut(s)	69, 299, 470, 593, 842
TaqI	TCGA	6 cut(s)	198, 219, 337, 482, 508, 786
TaqII	GACCGA	1 cut(s)	528
TasI	AATT	5 cut(s)	154, 617, 738, 813, 873
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	3 cut(s)	723, 732, 756
Tru9I	TTAA	3 cut(s)	723, 732, 756
TscAI	CASTG	2 cut(s)	74, 616
TseFI	GTSAC	2 cut(s)	233, 969
TseI	GCWGC	2 cut(s)	150, 953
Tsp45I	GTSAC	2 cut(s)	233, 969
TspDTI	ATGAA	3 cut(s)	708, 777, 893
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	2 cut(s)	74, 616
Vha464I	CTTAAG	1 cut(s)	731
XapI	RAATTY	1 cut(s)	738
XcmI	CCANNNNNNNNNTGG	1 cut(s)	417
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.