Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006926

Physical Location & Seq

Genomic Coordinates Forward (+)

2941372 .. 2943542

Gene Structure 2171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAAAGATAACCAGCTGAATCAGCATACCATTATCCATTTATCCTTGCCTACAGTTCTTGAATTATCAAACACCTTCAATCCTTGTATTGTACAAATCATGGAAGTGTCAGGTGAAATTAAATCTGATGAATACAACCGAGCTCTAGAGGTAAAGAGTTTCGATGATACAAAGGCTGGTGTCAAAGGCCTTGTAGATGCAGGCATAGGCAAAGTTCCAAAGATATTCATAGCACCATCTCATGATCATGCTGATTTTCCAACATGTCAGCAACCAAATTTGCAAATTCCCCTCATAAATCTCAGTGGCCTCTACGGTGATCGCCACAAGGAGATTGTTAATGAAGTTCGGATTGCATCCGAGACATGGGGTTTCTTCCAAGTAGTCAATCATGGAATTCCAGTGAATGTGCTTGAAGATATGATGCAAGGAGTAAGGAGGTTTAATGAGCAAGATCTTGAGGTGAAGAAACAGTTCTATAGTCGTGATCTAAAGAGAATTGTGAGATTCGATAGCAACTATGATCTCTACCAGTCCAAAGCAGCCAATTGGAGGGACACTTTAGCTTTCACCAAGCCTGTAGTGGATCATACCCAAGAACTTCCTGAAGTTTGTAGAGAAGCTACACTTGAGTGCACAAACCATGTCGTCAAGTTGGCAGATCAACTCTTTGAATTGCTATCAGAGGCTCTGGGACTCAAACCAGATTATCTAACAAGAGAAATGGAGTGTGCTAAGTTTTTTACCTGTGTCTGCCACTACTATCCAGCATGCCCTGAACCAGAGCTAACTTTGGGAACTAGCAAGCACACAGATCCAGCGTTCCTCACAATTCTCCTTCAAGACGAAATCGGTGGCCTTCAAGTTCTTCATGACAATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

295

Amino Acids

33.43

Weight (kDa)

5.21

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	96 - 197	3.9e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	250 - 293	3.6e-12	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006926)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03310
malus_domestica	MD05G1014300.v1.1 MD13G1212100.v1.1
prunus_persica	Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1
pyrus_communis	pycom13g18390 pycom16g18030
rosa_chinensis	RchiOBHm_Chr4g0392321 RchiOBHm_Chr4g0392351
rosa_laevigata	RLG00000009818
rosa_multiflora	Rmu_sc0001231.1_g000012 Rmu_sc0001231.1_g000019
rosa_roxburghii	Rroxscaffold_5G00337490 Rroxscaffold_5G00337530
rosa_rugosa	Rorug03G0338300
rosa_samantha	Rh4AG041700 Rh4AG042000 Rh4BG036600 Rh4BG036900 Rh4CG044300 Rh4CG044600 Rh4CG044800 Rh4DG039000
rosa_wichuraiana	Rw4G003230 Rw4G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	594, 809
AcsI	RAATTY	3 cut(s)	277, 285, 396
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	366, 552
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	6 cut(s)	62, 79, 416, 674, 842, 863
AleI	CACNNNNGTG	1 cut(s)	631
AluBI	AGCT	5 cut(s)	16, 143, 566, 623, 787
AluI	AGCT	5 cut(s)	16, 143, 566, 623, 787
Alw21I	GWGCWC	2 cut(s)	145, 638
Alw26I	GTCTC	1 cut(s)	356
Alw44I	GTGCAC	1 cut(s)	634
AlwI	GGATC	2 cut(s)	594, 809
AoxI	GGCC	3 cut(s)	187, 307, 856
ApaLI	GTGCAC	1 cut(s)	634
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	3 cut(s)	277, 285, 396
Asp700I	GAANNNNTTC	1 cut(s)	473
AsuHPI	GGTGA	4 cut(s)	125, 329, 475, 562
BaeGI	GKGCMC	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	145, 638
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	1 cut(s)	244
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	2 cut(s)	146, 801
BfmI	CTRYAG	3 cut(s)	51, 478, 579
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
BmsI	GCATC	3 cut(s)	187, 365, 414
BpuEI	CTTGAG	2 cut(s)	479, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 552
Bse1I	ACTGG	2 cut(s)	401, 532
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	2 cut(s)	366, 552
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	2 cut(s)	401, 532
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	1 cut(s)	554
BshFI	GGCC	3 cut(s)	189, 309, 858
BsiHKAI	GWGCWC	2 cut(s)	145, 638
BslFI	GGGAC	2 cut(s)	569, 708
BslI	CCNNNNNNNGG	2 cut(s)	366, 552
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	2 cut(s)	569, 708
BsnI	GGCC	3 cut(s)	189, 309, 858
Bsp1286I	GDGCHC	2 cut(s)	145, 638
Bsp1407I	TGTACA	1 cut(s)	91
Bsp143I	GATC	8 cut(s)	244, 319, 454, 487, 523, 586, 661, 814
BspANI	GGCC	3 cut(s)	189, 309, 858
BspCNI	CTCAG	1 cut(s)	315
BspHI	TCATGA	2 cut(s)	241, 871
BspPI	GGATC	2 cut(s)	594, 809
BsrGI	TGTACA	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	401, 532
BssMI	GATC	8 cut(s)	244, 319, 454, 487, 523, 586, 661, 814
Bst4CI	ACNGT	3 cut(s)	55, 317, 474
BstAUI	TGTACA	1 cut(s)	91
BstC8I	GCNNGC	3 cut(s)	202, 772, 806
BstDEI	CTNAG	2 cut(s)	302, 735
BstF5I	GGATG	1 cut(s)	356
BstKTI	GATC	8 cut(s)	247, 322, 457, 490, 526, 589, 664, 817
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	8 cut(s)	244, 319, 454, 487, 523, 586, 661, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNSI	RCATGY	2 cut(s)	267, 774
BstSFI	CTRYAG	3 cut(s)	51, 478, 579
BstSLI	GKGCMC	1 cut(s)	638
BstV1I	GCAGC	1 cut(s)	554
BstX2I	RGATCY	2 cut(s)	454, 814
BstYI	RGATCY	2 cut(s)	454, 814
BsuRI	GGCC	3 cut(s)	189, 309, 858
BtsCI	GGATG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	310, 408
Cac8I	GCNNGC	3 cut(s)	202, 772, 806
CciI	TCATGA	2 cut(s)	241, 871
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	9 cut(s)	100, 242, 248, 264, 366, 392, 644, 771, 872
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	2 cut(s)	302, 735
DpnI	GATC	8 cut(s)	246, 321, 456, 489, 525, 588, 663, 816
DpnII	GATC	8 cut(s)	244, 319, 454, 487, 523, 586, 661, 814
Ecl136II	GAGCTC	1 cut(s)	143
Eco147I	AGGCCT	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	627
EcoICRI	GAGCTC	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	9 cut(s)	103, 245, 251, 267, 369, 395, 647, 774, 875
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	2 cut(s)	569, 708
FatI	CATG	9 cut(s)	99, 241, 247, 263, 365, 391, 643, 770, 871
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	2 cut(s)	146, 801
GluI	GCNGC	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	189, 309, 858
Hin1II	CATG	9 cut(s)	103, 245, 251, 267, 369, 395, 647, 774, 875
HinfI	GANTC	3 cut(s)	19, 507, 696
HphI	GGTGA	4 cut(s)	125, 329, 475, 562
Hpy166II	GTNNAC	1 cut(s)	636
Hpy188I	TCNGA	4 cut(s)	127, 351, 361, 685
Hpy188III	TCNNGA	8 cut(s)	59, 146, 242, 458, 485, 605, 842, 872
Hpy8I	GTNNAC	1 cut(s)	636
HpyAV	CCTTC	3 cut(s)	85, 848, 869
HpyCH4III	ACNGT	3 cut(s)	55, 317, 474
HpyCH4V	TGCA	5 cut(s)	200, 283, 356, 427, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	302, 735
Hsp92II	CATG	9 cut(s)	103, 245, 251, 267, 369, 395, 647, 774, 875
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	8 cut(s)	244, 319, 454, 487, 523, 586, 661, 814
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	3 cut(s)	187, 365, 414
MaeI	CTAG	2 cut(s)	146, 801
MalI	GATC	8 cut(s)	246, 321, 456, 489, 525, 588, 663, 816
MboI	GATC	8 cut(s)	244, 319, 454, 487, 523, 586, 661, 814
MboII	GAAGA	4 cut(s)	367, 428, 478, 860
MfeI	CAATTG	1 cut(s)	547
MflI	RGATCY	2 cut(s)	454, 814
MhlI	GDGCHC	2 cut(s)	145, 638
MluCI	AATT	9 cut(s)	62, 117, 277, 285, 396, 498, 547, 674, 831
MlyI	GAGTC	1 cut(s)	690
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	8 cut(s)	142, 302, 320, 432, 454, 546, 679, 836
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	3 cut(s)	120, 339, 444
MslI	CAYNNNNRTG	3 cut(s)	104, 246, 631
MspA1I	CMGCKG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	547
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeII	GATC	8 cut(s)	244, 319, 454, 487, 523, 586, 661, 814
NlaIII	CATG	9 cut(s)	103, 245, 251, 267, 369, 395, 647, 774, 875
NspI	RCATGY	2 cut(s)	267, 774
OliI	CACNNNNGTG	1 cut(s)	631
PaeI	GCATGC	1 cut(s)	774
PagI	TCATGA	2 cut(s)	241, 871
PceI	AGGCCT	1 cut(s)	189
PciI	ACATGT	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	19, 507
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
PscI	ACATGT	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	145
PsuI	RGATCY	2 cut(s)	454, 814
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	3 cut(s)	104, 246, 631
SacI	GAGCTC	1 cut(s)	145
SaqAI	TTAA	3 cut(s)	120, 339, 444
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	8 cut(s)	244, 319, 454, 487, 523, 586, 661, 814
SchI	GAGTC	1 cut(s)	690
SduI	GDGCHC	2 cut(s)	145, 638
SfaNI	GCATC	3 cut(s)	187, 365, 414
SfcI	CTRYAG	3 cut(s)	51, 478, 579
SmiMI	CAYNNNNRTG	3 cut(s)	104, 246, 631
SmlI	CTYRAG	2 cut(s)	458, 629
SmoI	CTYRAG	2 cut(s)	458, 629
SphI	GCATGC	1 cut(s)	774
Sse9I	AATT	9 cut(s)	62, 117, 277, 285, 396, 498, 547, 674, 831
SseBI	AGGCCT	1 cut(s)	189
SspMI	CTAG	2 cut(s)	146, 801
SstI	GAGCTC	1 cut(s)	145
StuI	AGGCCT	1 cut(s)	189
TaaI	ACNGT	3 cut(s)	55, 317, 474
TaqI	TCGA	2 cut(s)	162, 510
TasI	AATT	9 cut(s)	62, 117, 277, 285, 396, 498, 547, 674, 831
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	19, 507
Tru1I	TTAA	3 cut(s)	120, 339, 444
Tru9I	TTAA	3 cut(s)	120, 339, 444
TscAI	CASTG	2 cut(s)	310, 408
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	5 cut(s)	17, 144, 217, 357, 860
TspRI	CASTG	2 cut(s)	310, 408
VneI	GTGCAC	1 cut(s)	634
XapI	RAATTY	3 cut(s)	277, 285, 396
XbaI	TCTAGA	1 cut(s)	145
XceI	RCATGY	2 cut(s)	267, 774
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	2 cut(s)	146, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.