Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006926

Physical Location & Seq

Genomic Coordinates Forward (+)

6590292 .. 6591311

Gene Structure 1020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG036600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAAGTCTCAGGCGAAACTCAATCTGCTGAATACAACCGAGCTCAAGAGGTAAAGAGTTTCGATGATACAAAGGCTGGAGTCAAAGGCCTTGTAGATGCAGGCATAGGCAAAGTCCCAAAGATATTCATAGCACCATCTAATGATCATGCTGATTTTCCAACATGTCAGCAACCAAATTTGCAAATTCCTGTCATAAATCTCGGTGGCCTCTACGGTGATCGCCACAAGGAGATTGTTAATGAAGTTCGGATTGCATCCGAGACATGGGGTTTCTTCCAAGTGGTCAATCATGGAGTTCCATTGAATGTGCTTGAAGATATGATCCAAGGCGTAAGGAGGTTTAATGAGCAAGATCTTGAGGCGAAGAAAGAGTTCTATAGTCGTGATCTAAAGAGAACTGTGAGATTCAATAGCAATTACGATCTCTACCAGTCAAAAGCAGCTAATTGGAGGGACACTTTGGCTTTTACCAAGCCCGCAGTTGATCATGAACCCCAAGAACTCCCTCAAGTTTGTAGAGAAGTAGCACTTGAGTACACAAACCATGTCATAGAGTTGGCAGATCAACTCTTTGGATTATTATCAGAGGCTCTGGAACTCAAACCGGATTACCTAACAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

208

Amino Acids

23.63

Weight (kDa)

5.09

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	63 - 165	7.2e-19	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006926)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03310
malus_domestica	MD05G1014300.v1.1 MD13G1212100.v1.1
prunus_persica	Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1 Prupe.1G037000_v2.0.a1
pyrus_communis	pycom13g18390 pycom16g18030
rosa_chinensis	RchiOBHm_Chr4g0392321 RchiOBHm_Chr4g0392351
rosa_laevigata	RLG00000009818
rosa_multiflora	Rmu_sc0001231.1_g000012 Rmu_sc0001231.1_g000019
rosa_roxburghii	Rroxscaffold_5G00337490 Rroxscaffold_5G00337530
rosa_rugosa	Rorug03G0338300
rosa_samantha	Rh4AG041700 Rh4AG042000 Rh4BG036600 Rh4BG036900 Rh4CG044300 Rh4CG044600 Rh4CG044800 Rh4DG039000
rosa_wichuraiana	Rw4G003230 Rw4G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	1 cut(s)	319
AcsI	RAATTY	2 cut(s)	178, 186
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	1 cut(s)	267
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	307, 317, 412
AluBI	AGCT	2 cut(s)	44, 446
AluI	AGCT	2 cut(s)	44, 446
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	13, 257
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	2 cut(s)	88, 208
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	2 cut(s)	178, 186
Asp700I	GAANNNNTTC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	1 cut(s)	145
BclI	TGATCA	2 cut(s)	145, 487
BcoDI	GTCTC	2 cut(s)	13, 257
BfmI	CTRYAG	1 cut(s)	379
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
BmsI	GCATC	2 cut(s)	88, 266
BpmI	CTGGAG	1 cut(s)	99
BpuEI	CTTGAG	4 cut(s)	30, 380, 495, 554
BsaBI	GATNNNNATC	1 cut(s)	583
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	583
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	257
BseJI	GATNNNNATC	1 cut(s)	583
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	455
BshFI	GGCC	2 cut(s)	90, 210
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	2 cut(s)	101, 470
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	2 cut(s)	13, 257
BsmFI	GGGAC	2 cut(s)	101, 470
BsnI	GGCC	2 cut(s)	90, 210
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	8 cut(s)	145, 220, 324, 355, 388, 424, 487, 565
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	90, 210
BspCNI	CTCAG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	490
BspPI	GGATC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	8 cut(s)	145, 220, 324, 355, 388, 424, 487, 565
BssT1I	CCWWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	218, 403
BstC8I	GCNNGC	2 cut(s)	103, 480
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	257
BstKTI	GATC	8 cut(s)	148, 223, 327, 358, 391, 427, 490, 568
BstMAI	GTCTC	2 cut(s)	13, 257
BstMBI	GATC	8 cut(s)	145, 220, 324, 355, 388, 424, 487, 565
BstNSI	RCATGY	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	90, 210
BtsCI	GGATG	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	103, 480
CciI	TCATGA	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	6 cut(s)	149, 165, 267, 293, 491, 548
CviJI	RGCY	8 cut(s)	44, 77, 90, 210, 446, 467, 478, 593
CviKI_1	RGCY	8 cut(s)	44, 77, 90, 210, 446, 467, 478, 593
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	8 cut(s)	147, 222, 326, 357, 390, 426, 489, 567
DpnII	GATC	8 cut(s)	145, 220, 324, 355, 388, 424, 487, 565
Ecl136II	GAGCTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	328
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	6 cut(s)	152, 168, 270, 296, 494, 551
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	2 cut(s)	101, 470
FatI	CATG	6 cut(s)	148, 164, 266, 292, 490, 547
FauI	CCCGC	1 cut(s)	487
FbaI	TGATCA	2 cut(s)	145, 487
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	444
GluI	GCNGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	90, 210
HapII	CCGG	1 cut(s)	608
Hin1II	CATG	6 cut(s)	152, 168, 270, 296, 494, 551
HinfI	GANTC	2 cut(s)	81, 408
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	3 cut(s)	252, 262, 589
Hpy188III	TCNNGA	5 cut(s)	47, 359, 386, 491, 596
Hpy8I	GTNNAC	1 cut(s)	540
HpyCH4III	ACNGT	2 cut(s)	218, 403
HpyCH4V	TGCA	3 cut(s)	101, 184, 257
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	6 cut(s)	152, 168, 270, 296, 494, 551
Ksp22I	TGATCA	2 cut(s)	145, 487
Kzo9I	GATC	8 cut(s)	145, 220, 324, 355, 388, 424, 487, 565
LpnPI	CCDG	6 cut(s)	63, 87, 204, 446, 581, 621
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	2 cut(s)	88, 266
MalI	GATC	8 cut(s)	147, 222, 326, 357, 390, 426, 489, 567
MboI	GATC	8 cut(s)	145, 220, 324, 355, 388, 424, 487, 565
MboII	GAAGA	3 cut(s)	268, 329, 379
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	4 cut(s)	178, 186, 418, 448
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	7 cut(s)	43, 221, 333, 355, 447, 519, 583
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	2 cut(s)	240, 345
MspI	CCGG	1 cut(s)	608
NdeII	GATC	8 cut(s)	145, 220, 324, 355, 388, 424, 487, 565
NlaIII	CATG	6 cut(s)	152, 168, 270, 296, 494, 551
NspI	RCATGY	1 cut(s)	168
PagI	TCATGA	1 cut(s)	490
PceI	AGGCCT	1 cut(s)	90
PciI	ACATGT	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PscI	ACATGT	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	240, 345
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	8 cut(s)	145, 220, 324, 355, 388, 424, 487, 565
SchI	GAGTC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	6 cut(s)	46, 54, 344, 448, 618, 626
SfaNI	GCATC	2 cut(s)	88, 266
SfcI	CTRYAG	1 cut(s)	379
SmlI	CTYRAG	4 cut(s)	45, 359, 510, 533
SmoI	CTYRAG	4 cut(s)	45, 359, 510, 533
Sse9I	AATT	4 cut(s)	178, 186, 418, 448
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	480
SstI	GAGCTC	1 cut(s)	46
StuI	AGGCCT	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	2 cut(s)	218, 403
TaqI	TCGA	1 cut(s)	63
TasI	AATT	4 cut(s)	178, 186, 418, 448
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	1 cut(s)	408
Tru1I	TTAA	2 cut(s)	240, 345
Tru9I	TTAA	2 cut(s)	240, 345
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	3 cut(s)	118, 258, 507
XapI	RAATTY	2 cut(s)	178, 186
XceI	RCATGY	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.