Rorug03G0338300

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006926
Physical Location & Seq
Forward (+)
39992784 .. 39993960
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0338300.1

Sequence Viewer

Length: 1074 bp
ATGGCACCAATATTCTGCAGCAGCAGTAGTACTAGTGGGCAAAATCATCGGGCGTTTCCATTCAATCACGTCCTGCATTTCCTCTTCTTTGTTATTGGTTTGTCACTCGGCATCCTAGTTACCTTATACTTCCAGAGTTACTCATTACTCACTTTTCAAGCATCCCTCAACTCCATTAATAATTTTATTAACATTCCACTAAAACCATCACCCCCATCACCACCGAAATCACCAACTCCACCTCCACCTCCACCACCGCCAGTTCTGGTACCGTCTTTCTCTACAATTAATGAAACATCATCATCAGTATCTGTTAATTACAGTAGCAGTCCCAGTACTAGTGTTTCTTTGAAAGAACAAAAGCTGTTAGTACACAACATGAGCGATGAGGAGTTACTTTGGAGAGCATCCATGGCCCCTCAAGTTGATTCGCCTTACAACTCTGTTCCAAAAGTGGCTTTCATGTTCTTGACAAAAGGGCCACTACCTTTGGCTCCCTTATGGGACAAATTTTTCAAGGGACACGAGGGTCTATACTCCATCTATGTGCACGCGCACCCTTCTTTCAATGAATCGCAGCCTCAAACTTCGGTCTTCCATGGTCGAAGAATTCATAGCCAGGCCGTTTATTGGGGAACTTCCTTGATGTTGGATGCAGAGCGACGGCTATTAGCGAATGCACTGCTTGACTTGTCCAATCAAAGATTTGTATTGCTTTCCGAATCTTGCATTCCCTTGCTTAACTTCACGACAACTTATGACTACCTTATAAACTCAAATCAAAGCTTTCTAAGCGTATACGATGACCCGAGGAAGCCTGGTCGAGGGCGCTACAACCCTCAAATGTGGCCACAAATAAACATCACAGATTGGCGGAAAGGATCTCAATGGTTTGAAGTGCACCGAGACCTGGCCGTCCACATTGTCTCCGATCGGAAATACTACCCCATCTTTCAACAATACTGCCACCCTCCTTGTTATATCGATGAGCATTATATTCCAACATTCGTCAACATGTTGTATGCTGATCTCAACTCTGAGAGAAGCATTACTGATAGAAGCATTTTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

357

Amino Acids

40.65

Weight (kDa)

7.75

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 152 - 349 1.2e-70 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
AasI GACNNNNNNGTC 2 cut(s) 528, 914
Acc65I GGTACC 1 cut(s) 268
AccB1I GGYRCC 2 cut(s) 4, 268
AccI GTMKAC 1 cut(s) 798
AccII CGCG 1 cut(s) 554
AciI CCGC 2 cut(s) 257, 874
AclWI GGATC 1 cut(s) 889
AcoI YGGCCR 2 cut(s) 848, 912
AcsI RAATTY 2 cut(s) 509, 609
AfaI GTAC 4 cut(s) 31, 270, 337, 372
AfiI CCNNNNNNNGG 3 cut(s) 630, 824, 910
AflIII ACRYGT 1 cut(s) 1014
AgsI TTSAA 7 cut(s) 64, 158, 352, 517, 568, 896, 956
AhlI ACTAGT 2 cut(s) 32, 338
AjiI CACGTC 1 cut(s) 70
AjnI CCWGG 3 cut(s) 618, 817, 909
AluBI AGCT 2 cut(s) 364, 786
AluI AGCT 2 cut(s) 364, 786
Alw21I GWGCWC 2 cut(s) 552, 903
Alw26I GTCTC 2 cut(s) 900, 931
Alw44I GTGCAC 2 cut(s) 548, 899
AlwI GGATC 1 cut(s) 889
AlwNI CAGNNNCTG 1 cut(s) 311
Ama87I CYCGRG 1 cut(s) 808
AoxI GGCC 5 cut(s) 414, 479, 621, 848, 912
ApaLI GTGCAC 2 cut(s) 548, 899
ApeKI GCWGC 3 cut(s) 18, 21, 577
ApoI RAATTY 2 cut(s) 509, 609
AseI ATTAAT 2 cut(s) 177, 288
Asp718I GGTACC 1 cut(s) 268
AspLEI GCGC 2 cut(s) 556, 831
AspS9I GGNCC 2 cut(s) 415, 479
AsuHPI GGTGA 3 cut(s) 201, 210, 222
AvaI CYCGRG 1 cut(s) 808
BaeGI GKGCMC 2 cut(s) 552, 903
BalI TGGCCA 1 cut(s) 850
BanI GGYRCC 2 cut(s) 4, 268
BauI CACGAG 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 586
Bbv12I GWGCWC 2 cut(s) 552, 903
BbvI GCAGC 3 cut(s) 30, 33, 589
BccI CCATC 4 cut(s) 214, 223, 548, 956
BceAI ACGGC 3 cut(s) 608, 680, 899
BcgI CGANNNNNNTGC 4 cut(s) 29, 63, 664, 698
BciT130I CCWGG 3 cut(s) 620, 819, 911
BcoDI GTCTC 2 cut(s) 900, 931
BcuI ACTAGT 2 cut(s) 32, 338
BfaI CTAG 3 cut(s) 33, 116, 339
BfmI CTRYAG 1 cut(s) 16
BfoI RGCGCY 1 cut(s) 832
BisI GCNGC 3 cut(s) 19, 22, 578
BlsI GCNGC 3 cut(s) 20, 23, 579
BmcAI AGTACT 2 cut(s) 31, 337
Bme1390I CCNGG 3 cut(s) 620, 819, 911
BmeT110I CYCGRG 1 cut(s) 808
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 415, 479
BmiI GGNNCC 4 cut(s) 6, 270, 417, 495
BmrFI CCNGG 3 cut(s) 620, 819, 911
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 4 cut(s) 120, 170, 416, 643
BmuI ACTGGG 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 586
BpuEI CTTGAG 1 cut(s) 405
Bsa29I ATCGAT 1 cut(s) 984
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 3 cut(s) 411, 598, 809
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 911, 941
Bsc4I CCNNNNNNNGG 3 cut(s) 630, 824, 910
Bse1I ACTGG 2 cut(s) 260, 333
BseBI CCWGG 3 cut(s) 620, 819, 911
BseCI ATCGAT 1 cut(s) 984
BseDI CCNNGG 3 cut(s) 411, 598, 809
BseGI GGATG 4 cut(s) 111, 161, 407, 658
BseLI CCNNNNNNNGG 3 cut(s) 630, 824, 910
BseMII CTCAG 1 cut(s) 1029
BseNI ACTGG 2 cut(s) 260, 333
BseRI GAGGAG 1 cut(s) 404
BseSI GKGCMC 2 cut(s) 552, 903
BseXI GCAGC 3 cut(s) 30, 33, 589
Bsh1236I CGCG 1 cut(s) 554
Bsh1285I CGRYCG 1 cut(s) 934
BshFI GGCC 5 cut(s) 416, 481, 623, 850, 914
BshNI GGYRCC 2 cut(s) 4, 268
BshVI ATCGAT 1 cut(s) 984
BsiEI CGRYCG 1 cut(s) 934
BsiHKAI GWGCWC 2 cut(s) 552, 903
BsiHKCI CYCGRG 1 cut(s) 808
BslFI GGGAC 3 cut(s) 315, 518, 534
BslI CCNNNNNNNGG 3 cut(s) 630, 824, 910
BsmAI GTCTC 2 cut(s) 900, 931
BsmFI GGGAC 3 cut(s) 315, 518, 534
BsmI GAATGC 2 cut(s) 682, 729
BsnI GGCC 5 cut(s) 416, 481, 623, 850, 914
Bso31I GGTCTC 1 cut(s) 900
BsoBI CYCGRG 1 cut(s) 808
Bsp1286I GDGCHC 2 cut(s) 552, 903
Bsp143I GATC 3 cut(s) 881, 931, 1027
Bsp19I CCATGG 2 cut(s) 411, 598
BspACI CCGC 2 cut(s) 257, 874
BspANI GGCC 5 cut(s) 416, 481, 623, 850, 914
BspCNI CTCAG 1 cut(s) 1030
BspDI ATCGAT 1 cut(s) 984
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 4 cut(s) 6, 270, 417, 495
BspMAI CTGCAG 1 cut(s) 20
BspPI GGATC 1 cut(s) 889
BspT107I GGYRCC 2 cut(s) 4, 268
BspTNI GGTCTC 1 cut(s) 900
BsrI ACTGG 2 cut(s) 260, 333
BssECI CCNNGG 3 cut(s) 411, 598, 809
BssMI GATC 3 cut(s) 881, 931, 1027
BssNAI GTATAC 1 cut(s) 799
BssSI CACGAG 1 cut(s) 524
BssT1I CCWWGG 2 cut(s) 411, 598
Bst1107I GTATAC 1 cut(s) 799
Bst2BI CACGAG 1 cut(s) 524
Bst2UI CCWGG 3 cut(s) 620, 819, 911
Bst4CI ACNGT 2 cut(s) 273, 323
Bst6I CTCTTC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 2 cut(s) 791, 1038
BstDSI CCRYGG 2 cut(s) 411, 598
BstENI CCTNNNNNAGG 1 cut(s) 822
BstF5I GGATG 4 cut(s) 111, 161, 407, 658
BstFNI CGCG 1 cut(s) 554
BstH2I RGCGCY 1 cut(s) 832
BstHHI GCGC 2 cut(s) 556, 831
BstKTI GATC 3 cut(s) 884, 934, 1030
BstMAI GTCTC 2 cut(s) 900, 931
BstMBI GATC 3 cut(s) 881, 931, 1027
BstMCI CGRYCG 1 cut(s) 934
BstMWI GCNNNNNNNGC 2 cut(s) 413, 792
BstNI CCWGG 3 cut(s) 620, 819, 911
BstNSI RCATGY 1 cut(s) 1018
BstSCI CCNGG 3 cut(s) 618, 817, 909
BstSFI CTRYAG 1 cut(s) 16
BstSLI GKGCMC 2 cut(s) 552, 903
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 3 cut(s) 30, 33, 589
BstV2I GAAGAC 1 cut(s) 586
BstX2I RGATCY 1 cut(s) 881
BstYI RGATCY 1 cut(s) 881
BstZ17I GTATAC 1 cut(s) 799
Bsu15I ATCGAT 1 cut(s) 984
BsuRI GGCC 5 cut(s) 416, 481, 623, 850, 914
BsuTUI ATCGAT 1 cut(s) 984
BtgI CCRYGG 2 cut(s) 411, 598
BtgZI GCGATG 1 cut(s) 399
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 4 cut(s) 111, 161, 407, 658
BtsI GCAGTG 1 cut(s) 680
BtsIMutI CAGTG 1 cut(s) 680
Cac8I GCNNGC 1 cut(s) 552
CaiI CAGNNNCTG 1 cut(s) 311
CfoI GCGC 2 cut(s) 556, 831
Cfr13I GGNCC 2 cut(s) 415, 479
ClaI ATCGAT 1 cut(s) 984
Csp6I GTAC 4 cut(s) 30, 269, 336, 371
CspCI CAANNNNNGTGG 4 cut(s) 471, 506, 956, 991
CviAII CATG 5 cut(s) 379, 412, 463, 599, 1015
CviQI GTAC 4 cut(s) 30, 269, 336, 371
DdeI CTNAG 2 cut(s) 791, 1038
DpnI GATC 3 cut(s) 883, 933, 1029
DpnII GATC 3 cut(s) 881, 931, 1027
DrdI GACNNNNNNGTC 2 cut(s) 528, 914
DseDI GACNNNNNNGTC 2 cut(s) 528, 914
EaeI YGGCCR 2 cut(s) 848, 912
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 889
Eco130I CCWWGG 2 cut(s) 411, 598
Eco31I GGTCTC 1 cut(s) 900
Eco88I CYCGRG 1 cut(s) 808
EcoNI CCTNNNNNAGG 1 cut(s) 822
EcoRI GAATTC 1 cut(s) 609
EcoRII CCWGG 3 cut(s) 618, 817, 909
EcoT14I CCWWGG 2 cut(s) 411, 598
ErhI CCWWGG 2 cut(s) 411, 598
FaeI CATG 5 cut(s) 382, 415, 466, 602, 1018
FaqI GGGAC 3 cut(s) 315, 518, 534
FatI CATG 5 cut(s) 378, 411, 462, 598, 1014
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 3 cut(s) 19, 22, 578
FokI GGATG 4 cut(s) 98, 148, 394, 665
Fsp4HI GCNGC 3 cut(s) 19, 22, 578
FspBI CTAG 3 cut(s) 33, 116, 339
GlaI GCGC 2 cut(s) 555, 830
GluI GCNGC 3 cut(s) 19, 22, 578
HaeII RGCGCY 1 cut(s) 832
HaeIII GGCC 5 cut(s) 416, 481, 623, 850, 914
HhaI GCGC 2 cut(s) 556, 831
Hin1II CATG 5 cut(s) 382, 415, 466, 602, 1018
Hin6I GCGC 2 cut(s) 554, 829
HinP1I GCGC 2 cut(s) 554, 829
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HindIII AAGCTT 1 cut(s) 784
HinfI GANTC 3 cut(s) 428, 572, 722
HphI GGTGA 3 cut(s) 201, 210, 222
Hpy166II GTNNAC 6 cut(s) 373, 550, 799, 901, 919, 1012
Hpy188I TCNGA 4 cut(s) 721, 931, 936, 1039
Hpy188III TCNNGA 3 cut(s) 133, 469, 748
Hpy8I GTNNAC 6 cut(s) 373, 550, 799, 901, 919, 1012
Hpy99I CGWCG 1 cut(s) 666
HpyAV CCTTC 1 cut(s) 570
HpyCH4III ACNGT 2 cut(s) 273, 323
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 7 cut(s) 18, 76, 550, 656, 680, 729, 901
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 792
HpyF3I CTNAG 2 cut(s) 791, 1038
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 5 cut(s) 382, 415, 466, 602, 1018
HspAI GCGC 2 cut(s) 554, 829
KpnI GGTACC 1 cut(s) 272
Kzo9I GATC 3 cut(s) 881, 931, 1027
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 3 cut(s) 30, 33, 589
LweI GCATC 4 cut(s) 120, 170, 416, 643
MaeI CTAG 3 cut(s) 33, 116, 339
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 4 cut(s) 102, 118, 137, 393
MalI GATC 3 cut(s) 883, 933, 1029
MboI GATC 3 cut(s) 881, 931, 1027
MboII GAAGA 3 cut(s) 76, 586, 618
MflI RGATCY 1 cut(s) 881
MhlI GDGCHC 2 cut(s) 552, 903
MlsI TGGCCA 1 cut(s) 850
MluCI AATT 5 cut(s) 181, 285, 316, 509, 609
MluNI TGGCCA 1 cut(s) 850
MmeI TCCRAC 2 cut(s) 630, 1025
Mox20I TGGCCA 1 cut(s) 850
MscI TGGCCA 1 cut(s) 850
MseI TTAA 6 cut(s) 177, 189, 288, 315, 741, 1067
MslI CAYNNNNRTG 2 cut(s) 545, 1067
Msp20I TGGCCA 1 cut(s) 850
MspR9I CCNGG 3 cut(s) 620, 819, 911
Mva1269I GAATGC 2 cut(s) 682, 729
MvaI CCWGG 3 cut(s) 620, 819, 911
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 2 cut(s) 413, 792
NcoI CCATGG 2 cut(s) 411, 598
NdeII GATC 3 cut(s) 881, 931, 1027
NlaIII CATG 5 cut(s) 382, 415, 466, 602, 1018
NlaIV GGNNCC 4 cut(s) 6, 270, 417, 495
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 102
NspI RCATGY 1 cut(s) 1018
PciI ACATGT 1 cut(s) 1014
PctI GAATGC 2 cut(s) 682, 729
PfeI GAWTC 3 cut(s) 428, 572, 722
PkrI GCNGC 3 cut(s) 20, 23, 579
Ple19I CGATCG 1 cut(s) 934
PscI ACATGT 1 cut(s) 1014
PshBI ATTAAT 2 cut(s) 177, 288
PsiI TTATAA 1 cut(s) 770
Psp6I CCWGG 3 cut(s) 618, 817, 909
PspGI CCWGG 3 cut(s) 618, 817, 909
PspN4I GGNNCC 4 cut(s) 6, 270, 417, 495
PspPI GGNCC 2 cut(s) 415, 479
PstI CTGCAG 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 881
PvuI CGATCG 1 cut(s) 934
RsaI GTAC 4 cut(s) 31, 270, 337, 372
RsaNI GTAC 4 cut(s) 30, 269, 336, 371
RseI CAYNNNNRTG 2 cut(s) 545, 1067
SaqAI TTAA 6 cut(s) 177, 189, 288, 315, 741, 1067
SatI GCNGC 3 cut(s) 19, 22, 578
Sau3AI GATC 3 cut(s) 881, 931, 1027
Sau96I GGNCC 2 cut(s) 415, 479
ScaI AGTACT 2 cut(s) 31, 337
ScrFI CCNGG 3 cut(s) 620, 819, 911
SduI GDGCHC 2 cut(s) 552, 903
SetI ASST 9 cut(s) 72, 125, 244, 250, 366, 490, 768, 788, 912
SfaNI GCATC 4 cut(s) 120, 170, 416, 643
SfcI CTRYAG 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 545, 1067
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
SpeI ACTAGT 2 cut(s) 32, 338
Sse9I AATT 5 cut(s) 181, 285, 316, 509, 609
SsiI CCGC 2 cut(s) 257, 874
SspI AATATT 1 cut(s) 12
SspMI CTAG 3 cut(s) 33, 116, 339
StyD4I CCNGG 3 cut(s) 618, 817, 909
StyI CCWWGG 2 cut(s) 411, 598
TaaI ACNGT 2 cut(s) 273, 323
TaiI ACGT 1 cut(s) 72
TaqI TCGA 3 cut(s) 604, 823, 984
TaqII GACCGA 1 cut(s) 580
TasI AATT 5 cut(s) 181, 285, 316, 509, 609
TatI WGTACW 3 cut(s) 29, 335, 370
TfiI GAWTC 3 cut(s) 428, 572, 722
Tru1I TTAA 6 cut(s) 177, 189, 288, 315, 741, 1067
Tru9I TTAA 6 cut(s) 177, 189, 288, 315, 741, 1067
TscAI CASTG 1 cut(s) 687
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 3 cut(s) 18, 21, 577
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 4 cut(s) 306, 451, 585, 602
TspRI CASTG 1 cut(s) 687
VneI GTGCAC 2 cut(s) 548, 899
VspI ATTAAT 2 cut(s) 177, 288
XagI CCTNNNNNAGG 1 cut(s) 822
XapI RAATTY 2 cut(s) 509, 609
XceI RCATGY 1 cut(s) 1018
XmiI GTMKAC 1 cut(s) 798
XspI CTAG 3 cut(s) 33, 116, 339
ZrmI AGTACT 2 cut(s) 31, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.